cabal-version: 2.2

-- This file has been generated from package.yaml by hpack version 0.34.2.
--
-- see: https://github.com/sol/hpack
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-- hash: 826b98c0606c81f3576251bedb9ae6aa528a2afeb1a782a01a6f17578ce698af

name:           slynx
version:        0.3.0
synopsis:       Handle molecular sequences
description:    Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on GitHub at <https://github.com/dschrempf/elynx>.
category:       Bioinformatics
homepage:       https://github.com/dschrempf/elynx#readme
bug-reports:    https://github.com/dschrempf/elynx/issues
author:         Dominik Schrempf
maintainer:     dominik.schrempf@gmail.com
copyright:      Dominik Schrempf (2020)
license:        GPL-3.0-or-later
license-file:   LICENSE
build-type:     Simple
extra-source-files:
    README.md
    ChangeLog.md

source-repository head
  type: git
  location: https://github.com/dschrempf/elynx

library
  exposed-modules:
      SLynx.Concatenate.Concatenate
      SLynx.Concatenate.Options
      SLynx.Examine.Examine
      SLynx.Examine.Options
      SLynx.Filter.Filter
      SLynx.Filter.Options
      SLynx.Options
      SLynx.Simulate.Options
      SLynx.Simulate.PhyloModel
      SLynx.Simulate.Simulate
      SLynx.SLynx
      SLynx.SubSample.Options
      SLynx.SubSample.SubSample
      SLynx.Tools
      SLynx.Translate.Options
      SLynx.Translate.Translate
  other-modules:
      Paths_slynx
  autogen-modules:
      Paths_slynx
  hs-source-dirs:
      src
  ghc-options: -Wall -fllvm
  build-depends:
      async
    , base >=4.7 && <5
    , bytestring
    , containers
    , elynx-markov
    , elynx-seq
    , elynx-tools
    , elynx-tree
    , hmatrix
    , megaparsec
    , monad-logger
    , mwc-random
    , optparse-applicative
    , scientific
    , text
    , transformers
    , vector
  default-language: Haskell2010

executable slynx
  main-is: Main.hs
  other-modules:
      Paths_slynx
  hs-source-dirs:
      app
  ghc-options: -Wall -fllvm -threaded -rtsopts -with-rtsopts=-N
  build-depends:
      base >=4.7 && <5
    , elynx-seq
    , elynx-tools
    , slynx
  default-language: Haskell2010