cabal-version:      3.0
name:               slynx
version:            0.7.2.0
synopsis:           Handle molecular sequences
description:
  Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on GitHub at <https://github.com/dschrempf/elynx>.

category:           Bioinformatics
homepage:           https://github.com/dschrempf/elynx#readme
bug-reports:        https://github.com/dschrempf/elynx/issues
author:             Dominik Schrempf
maintainer:         dominik.schrempf@gmail.com
copyright:          2021 Dominik Schrempf
license:            GPL-3.0-or-later
license-file:       LICENSE
build-type:         Simple
extra-source-files:
  ChangeLog.md
  README.md

source-repository head
  type:     git
  location: https://github.com/dschrempf/elynx

library
  exposed-modules:
    SLynx.Concatenate.Concatenate
    SLynx.Concatenate.Options
    SLynx.Examine.Examine
    SLynx.Examine.Options
    SLynx.Filter.Filter
    SLynx.Filter.Options
    SLynx.Options
    SLynx.Simulate.Options
    SLynx.Simulate.PhyloModel
    SLynx.Simulate.Simulate
    SLynx.SLynx
    SLynx.SubSample.Options
    SLynx.SubSample.SubSample
    SLynx.Tools
    SLynx.Translate.Options
    SLynx.Translate.Translate

  other-modules:    Paths_slynx
  autogen-modules:  Paths_slynx
  hs-source-dirs:   src
  ghc-options:      -Wall -Wunused-packages
  build-depends:
    , aeson
    , attoparsec
    , base                  >=4.7 && <5
    , bytestring
    , containers
    , elynx-markov
    , elynx-seq
    , elynx-tools
    , elynx-tree
    , hmatrix
    , matrices
    , optparse-applicative
    , random
    , statistics
    , text
    , transformers
    , vector

  default-language: Haskell2010

executable slynx
  main-is:          Main.hs
  other-modules:    Paths_slynx
  autogen-modules:  Paths_slynx
  hs-source-dirs:   app
  ghc-options:
    -Wall -Wunused-packages -threaded -rtsopts -with-rtsopts=-N

  build-depends:
    , base   >=4.7 && <5
    , slynx

  default-language: Haskell2010