------------------------------------------------------------------------ -- | -- Module : Data.Datamining.Clustering.SOMInternal -- Copyright : (c) Amy de Buitléir 2012-2013 -- License : BSD-style -- Maintainer : amy@nualeargais.ie -- Stability : experimental -- Portability : portable -- -- A module containing private @SOM@ internals. Most developers should -- use @SOM@ instead. This module is subject to change without notice. -- ------------------------------------------------------------------------ {-# LANGUAGE UnicodeSyntax, TypeFamilies, FlexibleContexts, FlexibleInstances, MultiParamTypeClasses #-} module Data.Datamining.Clustering.SOMInternal ( -- * Construction SOM(..), defaultSOM, customSOM, decayingGaussian, -- * Deconstruction toGridMap, -- * Advanced control trainNeighbourhood, incrementCounter ) where import qualified Data.Foldable as F (Foldable, foldr) import Data.List (foldl', minimumBy) import Data.Ord (comparing) import qualified Math.Geometry.Grid as G (Grid(..)) import qualified Math.Geometry.GridMap as GM (GridMap(..)) import Data.Datamining.Pattern (Pattern(..)) import Data.Datamining.Clustering.Classifier(Classifier(..)) import Prelude hiding (lookup) -- | A Self-Organising Map (SOM). -- -- Although @SOM@ implements @GridMap@, most users will only need the -- interface provided by @Data.Datamining.Clustering.Classifier@. If -- you chose to use the @GridMap@ functions, please note: -- -- 1. The functions @adjust@, and @adjustWithKey@ do not increment the -- counter. You can do so manually with @incrementCounter@. -- -- 2. The functions @map@ and @mapWithKey@ are not implemented (they -- just return an @error@). It would be problematic to implement -- them because the input SOM and the output SOM would have to have -- the same @Metric@ type. data SOM gm k p = SOM { sGridMap ∷ gm p, sLearningFunction ∷ Int → Int → Metric p, sCounter ∷ Int } instance (F.Foldable gm) ⇒ F.Foldable (SOM gm k) where foldr f x g = F.foldr f x (sGridMap g) instance (G.Grid (gm p)) ⇒ G.Grid (SOM gm k p) where type Index (SOM gm k p) = G.Index (gm p) type Direction (SOM gm k p) = G.Direction (gm p) indices = G.indices . sGridMap distance = G.distance . sGridMap neighbours = G.neighbours . sGridMap contains = G.contains . sGridMap viewpoint = G.viewpoint . sGridMap directionTo = G.directionTo . sGridMap tileCount = G.tileCount . sGridMap null = G.null . sGridMap nonNull = G.nonNull . sGridMap instance (F.Foldable gm, GM.GridMap gm p, G.Grid (GM.BaseGrid gm p)) ⇒ GM.GridMap (SOM gm k) p where type BaseGrid (SOM gm k) p = GM.BaseGrid gm p toGrid = GM.toGrid . sGridMap toMap = GM.toMap . sGridMap mapWithKey = error "Not implemented" adjustWithKey f k s = s { sGridMap=gm' } where gm = sGridMap s gm' = GM.adjustWithKey f k gm currentLearningFunction ∷ SOM gm k p → (Int → Metric p) currentLearningFunction s = (sLearningFunction s) (sCounter s) -- | Extracts the grid and current models from the SOM. toGridMap ∷ GM.GridMap gm p ⇒ SOM gm k p → gm p toGridMap = sGridMap adjustNode ∷ (Pattern p, G.Grid g, k ~ G.Index g) ⇒ g → (Int → Metric p) → p → k → k → p → p adjustNode g f target bmu k = makeSimilar target (f d) where d = G.distance g bmu k -- | Trains the specified node and the neighbourood around it to better -- match a target. -- Most users should use @train@, which automatically determines -- the BMU and trains it and its neighbourhood. trainNeighbourhood ∷ (Pattern p, G.Grid (gm p), GM.GridMap gm p, G.Index (GM.BaseGrid gm p) ~ G.Index (gm p)) ⇒ SOM gm k p → G.Index (gm p) → p → SOM gm k p trainNeighbourhood s bmu target = s { sGridMap=gm' } where gm = sGridMap s gm' = GM.mapWithKey (adjustNode gm f target bmu) gm f = currentLearningFunction s incrementCounter :: SOM gm k p → SOM gm k p incrementCounter s = s { sCounter=sCounter s + 1} justTrain ∷ (Ord (Metric p), Pattern p, G.Grid (gm p), GM.GridMap gm (Metric p), GM.GridMap gm p, G.Index (GM.BaseGrid gm (Metric p)) ~ G.Index (gm p), G.Index (GM.BaseGrid gm p) ~ G.Index (gm p)) ⇒ SOM gm k p → p → SOM gm k p justTrain s p = trainNeighbourhood s bmu p where ds = GM.toList . GM.map (p `difference`) . sGridMap $ s bmu = fst . minimumBy (comparing snd) $ ds instance (GM.GridMap gm p, k ~ G.Index (GM.BaseGrid gm p), Pattern p, G.Grid (gm p), GM.GridMap gm (Metric p), k ~ G.Index (gm p), k ~ G.Index (GM.BaseGrid gm (Metric p)), Ord (Metric p)) ⇒ Classifier (SOM gm) k p where toList = GM.toList . sGridMap numModels = G.tileCount . sGridMap models = GM.elems . sGridMap differences s p = GM.toList . GM.map (p `difference`) . sGridMap $ s trainBatch s = incrementCounter . foldl' justTrain s reportAndTrain s p = (bmu, ds, incrementCounter s') where ds = differences s p bmu = fst . minimumBy (comparing snd) $ ds s' = trainNeighbourhood s bmu p -- | Creates a classifier with a default (bell-shaped) learning -- function. Usage is @'defaultSOM' gm r w t@, where: -- -- [@gm@] The geometry and initial models for this classifier. -- A reasonable choice here is @'lazyGridMap' g ps@, where @g@ is a -- @'HexHexGrid'@, and @ps@ is a set of random patterns. -- -- [@r@] The learning rate to be applied to the BMU (Best Matching Unit) -- at "time" zero. The BMU is the model which best matches the -- current target pattern. -- -- [@w@] The width of the bell curve at time zero. -- -- [@t@] Controls how rapidly the learning rate decays. After this -- time, any learning done by the classifier will be negligible. -- We recommend setting this parameter to the number of patterns -- (or pattern batches) that will be presented to the classifier. An -- estimate is fine. defaultSOM ∷ Floating (Metric p) ⇒ gm p → Metric p → Metric p → Int → SOM gm k p defaultSOM gm r w t = SOM { sGridMap=gm, sLearningFunction=decayingGaussian r w t, sCounter=0 } -- | Creates a classifier with a custom learning function. -- Usage is @'customSOM' gm g@, where: -- -- [@gm@] The geometry and initial models for this classifier. -- A reasonable choice here is @'lazyGridMap' g ps@, where @g@ is a -- @'HexHexGrid'@, and @ps@ is a set of random patterns. -- -- [@f@] A function used to adjust the models in the classifier. -- This function will be invoked with two parameters. -- The first parameter will indicate how many patterns (or pattern -- batches) have previously been presented to this classifier. -- Typically this is used to make the learning rate decay over time. -- The second parameter to the function is the grid distance from -- the node being updated to the BMU (Best Matching Unit). -- The output is the learning rate for that node (the amount by -- which the node's model should be updated to match the target). -- The learning rate should be between zero and one. customSOM ∷ gm p → (Int → Int → Metric p) → SOM gm k p customSOM gm f = SOM { sGridMap=gm, sLearningFunction=f, sCounter=0 } -- | Configures a typical learning function for classifiers. -- @'decayingGaussian' r w0 tMax@ returns a bell curve-shaped -- function. At time zero, the maximum learning rate (applied to the -- BMU) is @r@, and the neighbourhood width is @w@. Over time the bell -- curve shrinks and the learning rate tapers off, until at time -- @tMax@, the learning rate is negligible. decayingGaussian ∷ Floating a ⇒ a → a → Int → (Int → Int → a) decayingGaussian r w0 tMax t d = r * s * exp (-(d'*d')/(2*w0*w0*s*s)) where s = exp (-t'/tMax') t' = fromIntegral t tMax' = fromIntegral tMax d' = fromIntegral d