Shuffle.Shuffle

Creation date: Thu Sep 19 15:01:52 2019.

The coalescent times are unaffected. The topology and the leaf order is shuffled. Branch support values are ignored and lost.

Documentation

shuffleCmd :: Maybe FilePath -> Shuffle ()

Shuffle a tree. Get all coalescent times, shuffle them. Get all leaves, shuffle them. Connect the shuffled leaves with the shuffled coalescent times. The shuffled tree has a new topology while keeping the same set of coalescent times and leaves.