tlynx-0.1.0: Handle phylogenetic trees

Copyright(c) Dominik Schrempf 2019
LicenseGPL-3
Maintainerdominik.schrempf@gmail.com
Stabilityunstable
Portabilityportable
Safe HaskellNone
LanguageHaskell2010

Shuffle.Shuffle

Description

Creation date: Thu Sep 19 15:01:52 2019.

The coalescent times are unaffected. The topology and the leaf order is shuffled. Branch support values are ignored and lost.

Synopsis

Documentation

shuffleCmd :: Maybe FilePath -> Shuffle () Source #

Shuffle a tree. Get all coalescent times, shuffle them. Get all leaves, shuffle them. Connect the shuffled leaves with the shuffled coalescent times. The shuffled tree has a new topology while keeping the same set of coalescent times and leaves.