too-many-cells: Cluster single cells and analyze cell clade relationships.

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Different methods to cluster and analyze single cell data with diversity indices and differential expression.

Versions [faq] 0.1.0.0, 0.1.0.1, 0.1.1.0, 0.1.2.0, 0.1.2.1, 0.1.3.0, 0.1.3.1, 0.1.4.0, 0.1.5.0, 0.1.6.0, 0.1.6.1, 0.1.7.0, 0.1.7.1, 0.1.8.0, 0.1.10.0, 0.1.11.0, 0.1.12.0, 0.1.12.1, 0.1.12.2, 0.1.12.3, 0.1.12.4, 0.2.0.0, 0.2.1.0, 0.2.2.0, 0.2.2.1, 0.2.2.2, 2.1.0.1, 2.1.1.0 (info)
Dependencies aeson, async, async-pool, attoparsec, base (>=4.7 && <5), birch-beer, bytestring, cassava, colour, containers, deepseq, diagrams, diagrams-cairo, diagrams-graphviz, diagrams-lib, differential, directory, diversity, fgl, filepath, find-clumpiness, foldl, graphviz, hashable, hierarchical-clustering, hierarchical-spectral-clustering, hmatrix, hmatrix-svdlibc, inline-r, IntervalMap, lens, managed, matrix-market-attoparsec, modularity, mtl, mwc-random, optparse-generic, palette, parallel, plots, process, resourcet, safe, scientific, sparse-linear-algebra, spectral-clustering (>=0.3.0.2), split, statistics, stm, streaming, streaming-bytestring, streaming-cassava, streaming-commons, streaming-utils, streaming-with, SVGFonts, system-filepath, temporary, terminal-progress-bar, text, text-show, too-many-cells, transformers, turtle (>=1.5.18), unordered-containers, vector, vector-algorithms, zlib [details]
License GPL-3.0-only
Copyright 2020 Gregory W. Schwartz
Author Gregory W. Schwartz
Maintainer gsch@pennmedicine.upenn.edu
Category Bioinformatics
Home page http://github.com/GregorySchwartz/too-many-cells#readme
Source repo head: git clone https://github.com/GregorySchwartz/too-many-cells
Uploaded by GregorySchwartz at 2021-02-26T14:56:11Z
Distributions
Executables too-many-cells
Downloads 8511 total (21 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
All reported builds failed as of 2021-02-26 [all 3 reports]

Modules

  • TooManyCells
    • Classify
      • TooManyCells.Classify.Classify
      • TooManyCells.Classify.Types
    • Differential
      • TooManyCells.Differential.Differential
      • TooManyCells.Differential.Types
    • Diversity
      • TooManyCells.Diversity.Diversity
      • TooManyCells.Diversity.Load
      • TooManyCells.Diversity.Plot
      • TooManyCells.Diversity.Types
    • File
      • TooManyCells.File.Types
    • MakeTree
      • TooManyCells.MakeTree.Adjacency
      • TooManyCells.MakeTree.Clumpiness
      • TooManyCells.MakeTree.Cluster
      • TooManyCells.MakeTree.Load
      • TooManyCells.MakeTree.Plot
      • TooManyCells.MakeTree.Print
      • TooManyCells.MakeTree.Types
      • TooManyCells.MakeTree.Utility
    • Matrix
      • TooManyCells.Matrix.AtacSeq
      • TooManyCells.Matrix.Load
      • TooManyCells.Matrix.Preprocess
      • TooManyCells.Matrix.Types
      • TooManyCells.Matrix.Utility
    • Motifs
      • TooManyCells.Motifs.FindMotif
      • TooManyCells.Motifs.Types
    • Paths
      • TooManyCells.Paths.Distance
      • TooManyCells.Paths.Plot
      • TooManyCells.Paths.Types
    • Peaks
      • TooManyCells.Peaks.ClusterPeaks
      • TooManyCells.Peaks.Types
    • Program
      • TooManyCells.Program.Classify
      • TooManyCells.Program.Differential
      • TooManyCells.Program.Diversity
      • TooManyCells.Program.Interactive
      • TooManyCells.Program.LoadMatrix
      • TooManyCells.Program.MakeTree
      • TooManyCells.Program.MatrixOutput
      • TooManyCells.Program.Motifs
      • TooManyCells.Program.Options
      • TooManyCells.Program.Paths
      • TooManyCells.Program.Peaks
      • TooManyCells.Program.Utility

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