-- Hoogle documentation, generated by Haddock
-- See Hoogle, http://www.haskell.org/hoogle/


-- | A package to parse VCF files inspired in similar python libraries
--   
--   A package to parse VCF files inspired in similar python libraries
@package vcf
@version 0.9.0

module Bio.VCF.Parser.Helpers
tabOrSpace :: Word8 -> Bool
isTab :: Word8 -> Bool
isSpace :: Word8 -> Bool
notTabOrSpace :: Word8 -> Bool
isNumber :: Word8 -> Bool
isFloatNumber :: Word8 -> Bool
isBase :: Word8 -> Bool
isBaseOrDeletion :: Word8 -> Bool
endOfLine :: Word8 -> Bool

module Bio.VCF.Internal.Types
data VCF
VCF :: !Header -> ![(Variation, [ByteString])] -> VCF
[header] :: VCF -> !Header
[variations] :: VCF -> ![(Variation, [ByteString])]
data Header
Header :: !ByteString -> ![InformationField] -> ![FilterField] -> ![FormatField] -> ![AlternativeAlleleField] -> !ByteString -> ![ContigField] -> ![SampleField] -> !PedigreeInformation -> Header
[fileFormat] :: Header -> !ByteString
[informationFields] :: Header -> ![InformationField]
[filterFields] :: Header -> ![FilterField]
[formatFields] :: Header -> ![FormatField]
[alternativeAlleleFields] :: Header -> ![AlternativeAlleleField]
[assemblyField] :: Header -> !ByteString
[contigFields] :: Header -> ![ContigField]
[sampleFields] :: Header -> ![SampleField]
[pedigreeFields] :: Header -> !PedigreeInformation
data Variation
Variation :: !ByteString -> !Int -> ![ByteString] -> !ByteString -> ![ByteString] -> !(Maybe Float) -> ![ByteString] -> ![ByteString] -> !(Maybe [ByteString]) -> Variation
[chrom] :: Variation -> !ByteString
[pos] :: Variation -> !Int
[idx] :: Variation -> ![ByteString]
[ref] :: Variation -> !ByteString
[alt] :: Variation -> ![ByteString]
[qual] :: Variation -> !(Maybe Float)
[filt] :: Variation -> ![ByteString]
[info] :: Variation -> ![ByteString]
[format] :: Variation -> !(Maybe [ByteString])
type Genotypes = [ByteString]
newtype Patient
Patient :: ByteString -> Patient
instance GHC.Show.Show Bio.VCF.Internal.Types.VCF
instance GHC.Generics.Generic Bio.VCF.Internal.Types.VCF
instance GHC.Classes.Eq Bio.VCF.Internal.Types.VCF
instance GHC.Show.Show Bio.VCF.Internal.Types.Header
instance GHC.Generics.Generic Bio.VCF.Internal.Types.Header
instance GHC.Classes.Eq Bio.VCF.Internal.Types.Header
instance GHC.Show.Show Bio.VCF.Internal.Types.Patient
instance GHC.Generics.Generic Bio.VCF.Internal.Types.Patient
instance GHC.Classes.Eq Bio.VCF.Internal.Types.Patient
instance GHC.Show.Show Bio.VCF.Internal.Types.Variation
instance GHC.Generics.Generic Bio.VCF.Internal.Types.Variation
instance GHC.Classes.Eq Bio.VCF.Internal.Types.Variation
instance Data.Aeson.Types.FromJSON.FromJSON Data.ByteString.Internal.ByteString
instance Data.Aeson.Types.ToJSON.ToJSON Data.ByteString.Internal.ByteString
instance Data.Aeson.Types.FromJSON.FromJSON Bio.VCF.Internal.Types.VCF
instance Data.Aeson.Types.ToJSON.ToJSON Bio.VCF.Internal.Types.VCF
instance Data.Aeson.Types.FromJSON.FromJSON Bio.VCF.Internal.Types.Header
instance Data.Aeson.Types.ToJSON.ToJSON Bio.VCF.Internal.Types.Header
instance Data.Aeson.Types.FromJSON.FromJSON Bio.VCF.Internal.Types.Variation
instance Data.Aeson.Types.ToJSON.ToJSON Bio.VCF.Internal.Types.Variation
instance Data.Aeson.Types.FromJSON.FromJSON Bio.VCF.Internal.Types.Patient
instance Data.Aeson.Types.ToJSON.ToJSON Bio.VCF.Internal.Types.Patient

module Bio.VCF.Parser.Parser
parseMetaInformation :: Parser ByteString
parseFormatLine :: Parser ByteString
parsePatients :: Parser [Patient]
parseChrom :: Parser ByteString
parsePosition :: Parser Int
parseID :: Parser [ByteString]
parseRef :: Parser ByteString
parseAlt :: Parser [ByteString]
parseQual :: Parser (Maybe Float)
parseFilter :: Parser [ByteString]
parseInformation :: Parser [ByteString]
parseFormat :: Parser (Maybe [ByteString])
parseGenotypes :: Parser [Genotypes]
parseVariation :: Parser (Variation, [Genotypes])