BioHMM-1.1.4: Libary for Hidden Markov Models in HMMER3 format.

Index

accBio.HMMData, Bio.HMMParser
alphaBio.HMMData, Bio.HMMParser
alphabetToSymbolsBio.HMMParser
beginBio.HMMData, Bio.HMMParser
bmBio.HMMData, Bio.HMMParser
cksumBio.HMMData, Bio.HMMParser
comBio.HMMData, Bio.HMMParser
compoBio.HMMData, Bio.HMMParser
compositeMatchEmissionsBio.HMMData, Bio.HMMParser
consBio.HMMData, Bio.HMMParser
csBio.HMMData, Bio.HMMParser
d2dBio.HMMData, Bio.HMMParser
d2mBio.HMMData, Bio.HMMParser
dateBio.HMMData, Bio.HMMParser
descBio.HMMData, Bio.HMMParser
diagramNameBio.HMMDraw
drawHMMER3Bio.HMMDraw
drawSingleHMMComparisonBio.HMMDraw
drawSingleHMMER3sBio.HMMDraw
effnBio.HMMData, Bio.HMMParser
gaBio.HMMData, Bio.HMMParser
getComparisonsHighlightParametersBio.HMMDraw
getHMMCompareResultsBio.HMMCompareResult
getModelNamesBio.HMMCompareResult
getModelsNamesBio.HMMCompareResult
hmmBio.HMMData, Bio.HMMParser
HMMCompareResultBio.HMMCompareResult
HMMER3 
1 (Type/Class)Bio.HMMData, Bio.HMMParser
2 (Data Constructor)Bio.HMMData, Bio.HMMParser
HMMER3Composite 
1 (Type/Class)Bio.HMMData, Bio.HMMParser
2 (Data Constructor)Bio.HMMData, Bio.HMMParser
HMMER3Node 
1 (Type/Class)Bio.HMMData, Bio.HMMParser
2 (Data Constructor)Bio.HMMData, Bio.HMMParser
i2iBio.HMMData, Bio.HMMParser
i2mBio.HMMData, Bio.HMMParser
insertEmissionsBio.HMMData, Bio.HMMParser
lengBio.HMMData, Bio.HMMParser
linkscore1Bio.HMMCompareResult
linkscore2Bio.HMMCompareResult
linksequenceBio.HMMCompareResult
localforwardBio.HMMData, Bio.HMMParser
localmsvBio.HMMData, Bio.HMMParser
localviterbiBio.HMMData, Bio.HMMParser
m2dBio.HMMData, Bio.HMMParser
m2iBio.HMMData, Bio.HMMParser
m2mBio.HMMData, Bio.HMMParser
mapBio.HMMData, Bio.HMMParser
matchEmissionsBio.HMMData, Bio.HMMParser
maxlBio.HMMData, Bio.HMMParser
mmBio.HMMData, Bio.HMMParser
model1matchednodesBio.HMMCompareResult
model1NameBio.HMMCompareResult
model2matchednodesBio.HMMCompareResult
model2NameBio.HMMCompareResult
nameBio.HMMData, Bio.HMMParser
ncBio.HMMData, Bio.HMMParser
ncrBio.HMMData, Bio.HMMParser
ncsBio.HMMData, Bio.HMMParser
nmaBio.HMMData, Bio.HMMParser
nmvBio.HMMData, Bio.HMMParser
nodeIdBio.HMMData, Bio.HMMParser
nodesBio.HMMData, Bio.HMMParser
nraBio.HMMData, Bio.HMMParser
nseqBio.HMMData, Bio.HMMParser
parseHMMCompareResultBio.HMMCompareResult
parseHMMER3Bio.HMMParser
printHMMBio.HMMDraw
readHMMCompareResultBio.HMMCompareResult
readHMMER3Bio.HMMParser
rfBio.HMMData, Bio.HMMParser
smBio.HMMData, Bio.HMMParser
svgsizeBio.HMMDraw
tcBio.HMMData, Bio.HMMParser
versionBio.HMMData, Bio.HMMParser