Biobase.GeneticCodes.Import

The tables imported with these functions are from ENA: https://www.ebi.ac.uk/ena/browse/translation-tables

Documentation

type TTParser = Parsec Void Text

fromFile :: (MonadIO m, MonadError String m) => FilePath -> m [TranslationTable Char Char]

Import translation tables from a given file. In case of parse error, print the error and exit with a failure.

fromByteString :: MonadError String m => ByteString -> m [TranslationTable Char Char]

Parse a ByteString with translation tables.

parseTranslationTable :: TTParser (TranslationTable Char Char)

Parses a single translation table.

parseHeader :: TTParser (Int, Text)

Parse the header, returning the Identifier and the name of the table.

parseData :: Text -> TTParser String