Safe Haskell	None
Language	Haskell2010

Biobase.Types.Evalue

Description

Encode the number of hits to expect. This is typically dependent on some "database size". Evalues are bounded by [0,infinity).

TODO Evalues close to zero are more interesting. We should strongly consider log-conversion here.

Synopsis

newtype Evalue = Evalue {
- getEvalue :: Double
}

Documentation

newtype Evalue Source #

Type-safe wrapper for e-values.

Constructors

Evalue
Fields getEvalue :: Double

Instances

Instances details

Eq Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods (==) :: Evalue -> Evalue -> Bool # (/=) :: Evalue -> Evalue -> Bool #
Num Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods (+) :: Evalue -> Evalue -> Evalue # (-) :: Evalue -> Evalue -> Evalue # (*) :: Evalue -> Evalue -> Evalue # negate :: Evalue -> Evalue # abs :: Evalue -> Evalue # signum :: Evalue -> Evalue # fromInteger :: Integer -> Evalue #
Ord Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods compare :: Evalue -> Evalue -> Ordering # (<) :: Evalue -> Evalue -> Bool # (<=) :: Evalue -> Evalue -> Bool # (>) :: Evalue -> Evalue -> Bool # (>=) :: Evalue -> Evalue -> Bool # max :: Evalue -> Evalue -> Evalue # min :: Evalue -> Evalue -> Evalue #
Read Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods readsPrec :: Int -> ReadS Evalue # readList :: ReadS [Evalue] # readPrec :: ReadPrec Evalue # readListPrec :: ReadPrec [Evalue] #
Show Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods showsPrec :: Int -> Evalue -> ShowS # show :: Evalue -> String # showList :: [Evalue] -> ShowS #
Generic Evalue Source #
Instance details Defined in Biobase.Types.Evalue Associated Types type Rep Evalue :: Type -> Type # Methods from :: Evalue -> Rep Evalue x # to :: Rep Evalue x -> Evalue #
NumericLimits Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods minFinite :: Evalue # maxFinite :: Evalue #
Hashable Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods hashWithSalt :: Int -> Evalue -> Int # hash :: Evalue -> Int #
ToJSON Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods toJSON :: Evalue -> Value # toEncoding :: Evalue -> Encoding # toJSONList :: [Evalue] -> Value # toEncodingList :: [Evalue] -> Encoding #
FromJSON Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods parseJSON :: Value -> Parser Evalue # parseJSONList :: Value -> Parser [Evalue] #
Binary Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods put :: Evalue -> Put # get :: Get Evalue # putList :: [Evalue] -> Put #
Serialize Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods put :: Putter Evalue # get :: Get Evalue #
Default Evalue Source #	By default, we expect no hits.
Instance details Defined in Biobase.Types.Evalue Methods def :: Evalue #
NFData Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods rnf :: Evalue -> () #
Unbox Evalue Source #
Instance details Defined in Biobase.Types.Evalue
Wrapped Evalue Source #
Instance details Defined in Biobase.Types.Evalue Associated Types type Unwrapped Evalue # Methods _Wrapped' :: Iso' Evalue (Unwrapped Evalue) #
Vector Vector Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods basicUnsafeFreeze :: PrimMonad m => Mutable Vector (PrimState m) Evalue -> m (Vector Evalue) # basicUnsafeThaw :: PrimMonad m => Vector Evalue -> m (Mutable Vector (PrimState m) Evalue) # basicLength :: Vector Evalue -> Int # basicUnsafeSlice :: Int -> Int -> Vector Evalue -> Vector Evalue # basicUnsafeIndexM :: Monad m => Vector Evalue -> Int -> m Evalue # basicUnsafeCopy :: PrimMonad m => Mutable Vector (PrimState m) Evalue -> Vector Evalue -> m () # elemseq :: Vector Evalue -> Evalue -> b -> b #
Evalue ~ t => Rewrapped Evalue t Source #
Instance details Defined in Biobase.Types.Evalue
MVector MVector Evalue Source #
Instance details Defined in Biobase.Types.Evalue Methods basicLength :: MVector s Evalue -> Int # basicUnsafeSlice :: Int -> Int -> MVector s Evalue -> MVector s Evalue # basicOverlaps :: MVector s Evalue -> MVector s Evalue -> Bool # basicUnsafeNew :: PrimMonad m => Int -> m (MVector (PrimState m) Evalue) # basicInitialize :: PrimMonad m => MVector (PrimState m) Evalue -> m () # basicUnsafeReplicate :: PrimMonad m => Int -> Evalue -> m (MVector (PrimState m) Evalue) # basicUnsafeRead :: PrimMonad m => MVector (PrimState m) Evalue -> Int -> m Evalue # basicUnsafeWrite :: PrimMonad m => MVector (PrimState m) Evalue -> Int -> Evalue -> m () # basicClear :: PrimMonad m => MVector (PrimState m) Evalue -> m () # basicSet :: PrimMonad m => MVector (PrimState m) Evalue -> Evalue -> m () # basicUnsafeCopy :: PrimMonad m => MVector (PrimState m) Evalue -> MVector (PrimState m) Evalue -> m () # basicUnsafeMove :: PrimMonad m => MVector (PrimState m) Evalue -> MVector (PrimState m) Evalue -> m () # basicUnsafeGrow :: PrimMonad m => MVector (PrimState m) Evalue -> Int -> m (MVector (PrimState m) Evalue) #
type Rep Evalue Source #
Instance details Defined in Biobase.Types.Evalue type Rep Evalue = D1 ('MetaData "Evalue" "Biobase.Types.Evalue" "BiobaseTypes-0.2.1.0-KNWEaQoA0aY419BnftjfF1" 'True) (C1 ('MetaCons "Evalue" 'PrefixI 'True) (S1 ('MetaSel ('Just "getEvalue") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 Double)))
newtype Vector Evalue Source #
Instance details Defined in Biobase.Types.Evalue newtype Vector Evalue = V_Evalue (Vector Double)
type Unwrapped Evalue Source #
Instance details Defined in Biobase.Types.Evalue type Unwrapped Evalue = Double
newtype MVector s Evalue Source #
Instance details Defined in Biobase.Types.Evalue newtype MVector s Evalue = MV_Evalue (MVector s Double)