Biobase.Primary.Nuc.DNA

Documentation

data DNA

DNA nucleotides.

Instances

LetterChar DNA

Methods

letterChar :: Letter DNA -> Char

charLetter :: Char -> Letter DNA

Bounded (Letter DNA)

Methods

minBound :: Letter DNA

maxBound :: Letter DNA

Enum (Letter DNA)

Methods

succ :: Letter DNA -> Letter DNA

pred :: Letter DNA -> Letter DNA

toEnum :: Int -> Letter DNA

fromEnum :: Letter DNA -> Int

enumFrom :: Letter DNA -> [Letter DNA]

enumFromThen :: Letter DNA -> Letter DNA -> [Letter DNA]

enumFromTo :: Letter DNA -> Letter DNA -> [Letter DNA]

enumFromThenTo :: Letter DNA -> Letter DNA -> Letter DNA -> [Letter DNA]

Read (Letter DNA)

Methods

readsPrec :: Int -> ReadS (Letter DNA)

readList :: ReadS [Letter DNA]

readPrec :: ReadPrec (Letter DNA)

readListPrec :: ReadPrec [Letter DNA]

Show (Letter DNA)

Methods

showsPrec :: Int -> Letter DNA -> ShowS

show :: Letter DNA -> String

showList :: [Letter DNA] -> ShowS

IsString [Letter DNA]

Methods

fromString :: String -> [Letter DNA]

Degenerate (Letter DNA)

Methods

fromDegenerate :: Char -> [Letter DNA]

toDegenerate :: [Letter DNA] -> Maybe Char

MkPrimary (Vector Char) DNA

Methods

primary :: Vector Char -> Primary DNA

Complement (Letter DNA) (Letter DNA)

Methods

complement :: Letter DNA -> Letter DNA

Complement (Letter DNA) (Letter RNA)

Methods

complement :: Letter DNA -> Letter RNA

Complement (Letter RNA) (Letter DNA)

Methods

complement :: Letter RNA -> Letter DNA

pattern A :: Letter DNA

pattern C :: Letter DNA

pattern G :: Letter DNA

pattern T :: Letter DNA

pattern N :: Letter DNA

acgt :: [Letter DNA]

charDNA :: Char -> Letter DNA

dnaChar :: Letter DNA -> Char

dnaSeq :: MkPrimary n DNA => n -> Primary DNA