HsHTSLib-1.9.1: Bindings to htslib. (Index)

HsHTSLib-1.9.1: Bindings to htslib.

Index

appendAux	Bio.HTS
AuxByteArray	Bio.HTS.Types
AuxChar	Bio.HTS.Types
auxData	Bio.HTS
AuxFloat	Bio.HTS.Types
AuxFloatArray	Bio.HTS.Types
AuxiliaryData	Bio.HTS.Types
AuxInt	Bio.HTS.Types
AuxIntArray	Bio.HTS.Types
AuxString	Bio.HTS.Types
BAM
1 (Type/Class)	Bio.HTS.Types
2 (Data Constructor)	Bio.HTS.Types
Bam1	Bio.HTS.Internal
bamAuxAppend	Bio.HTS.Internal
bamAuxGet	Bio.HTS.Internal
bamChr	Bio.HTS.Internal
bamEndpos	Bio.HTS.Internal
bamGetAux	Bio.HTS.Internal
bamGetCigar	Bio.HTS.Internal
bamGetLAux	Bio.HTS.Internal
bamGetQual	Bio.HTS.Internal
bamGetSeq	Bio.HTS.Internal
BamHdr	Bio.HTS.Internal
bamHdrRead	Bio.HTS.Internal
bamHdrWrite	Bio.HTS.Internal
BAMHeader
1 (Type/Class)	Bio.HTS.Types
2 (Data Constructor)	Bio.HTS.Types
bamIsRev	Bio.HTS.Internal
bamRead1	Bio.HTS.Internal
bamToSam	Bio.HTS
bamWrite1	Bio.HTS.Internal
BGZF	Bio.HTS.Internal
cigar	Bio.HTS
Coordinate	Bio.HTS.Types
endLoc	Bio.HTS
flag	Bio.HTS
getBamHeader	Bio.HTS
getBgzf	Bio.HTS.Internal
getChr	Bio.HTS
getChrId	Bio.HTS
getHeaderSize	Bio.HTS.Internal
getHeaderText	Bio.HTS.Internal
getSeq	Bio.HTS
getSortOrder	Bio.HTS
hasMultiSegments	Bio.HTS
htsClose	Bio.HTS.Internal
HTSFile	Bio.HTS.Internal
htsOpen	Bio.HTS.Internal
isBadQual	Bio.HTS
isDup	Bio.HTS
isFirstSegment	Bio.HTS
isLastSegment	Bio.HTS
isNextRC	Bio.HTS
isNextUnmapped	Bio.HTS
isProperAligned	Bio.HTS
isRC	Bio.HTS
isRev	Bio.HTS
isSecondary	Bio.HTS
isSupplementary	Bio.HTS
isUnmapped	Bio.HTS
mapq	Bio.HTS
mateChr	Bio.HTS
mateChrId	Bio.HTS
mateStartLoc	Bio.HTS
quality	Bio.HTS
qualityS	Bio.HTS
queryAuxData	Bio.HTS
Queryname	Bio.HTS.Types
readLen	Bio.HTS
SAM
1 (Type/Class)	Bio.HTS.Types
2 (Data Constructor)	Bio.HTS.Types
seqName	Bio.HTS
showBamHeader	Bio.HTS.Types
showSam	Bio.HTS.Types
sinkBam	Bio.HTS
SortOrder	Bio.HTS.Types
startLoc	Bio.HTS
streamBam	Bio.HTS
tLen	Bio.HTS
unbam	Bio.HTS.Types
unbamHeader	Bio.HTS.Types
Unknown	Bio.HTS.Types
Unsorted	Bio.HTS.Types
withHTSFile	Bio.HTS.Internal
_sam_aux	Bio.HTS.Types
_sam_cigar	Bio.HTS.Types
_sam_flag	Bio.HTS.Types
_sam_mapq	Bio.HTS.Types
_sam_pnext	Bio.HTS.Types
_sam_pos	Bio.HTS.Types
_sam_qname	Bio.HTS.Types
_sam_qual	Bio.HTS.Types
_sam_rname	Bio.HTS.Types
_sam_rnext	Bio.HTS.Types
_sam_seq	Bio.HTS.Types
_sam_tlen	Bio.HTS.Types