Taxonomy: Libary for parsing, processing and vizualization of taxonomy data

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.

It can utilize information from the Entrez REST interface via EntrezHTTP, as well as from the files of the Taxonomy database dump.

Input data is parsed into a FGL based datastructure, which enables a wealth of processing steps like node distances, retrieval of parent nodes or extraction of subtrees.

Trees can be visualised via dot-format (graphviz)

or via json-format (http://d3js.org/d3js).

The TaxonomyTools package contains tools based on this package.

Modules

[Index]

Downloads

• Taxonomy-1.0.1.tar.gz [browse] (Cabal source package)
• Package description (revised from the package)

Note: This package has metadata revisions in the cabal description newer than included in the tarball. To unpack the package including the revisions, use 'cabal get'.

Maintainer's Corner

Package maintainers

• FlorianEggenhofer

For package maintainers and hackage trustees

• edit package information

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