RNAlien: Unsupervized construction of RNA family models

RNAlien is a tool for automatic construction of RNAfamily models from a single sequence.

It is available as a commandline tool, for testing or construction of few sequences the webservice can be used.

The source code of RNAlien, as well as the webserver is open source and available via GitHub (License GPL-3):

TaxonomyTools which can be used to visualise the organisms included in a RNAlien result can be found here (License GPL-3):

For instruction how to use RNAlien please see the Help page.

Dependencies:

Installation via cabal-install:

cabal install RNAlien

Versions [faq]	1.0.0, 1.1.0, 1.1.1, 1.1.3, 1.2.4, 1.2.5, 1.2.6, 1.2.8, 1.2.9, 1.3.0, 1.3.1, 1.3.7, 1.6.0, 1.7.0
Dependencies	aeson (<=1.4.2.0), base (>=4.5 && <5), BiobaseBlast (==0.3.1.), BiobaseFasta (==0.3.0.), BiobaseHTTP (==1.1.0), BiobaseTypes (==0.2.0.*), BlastHTTP (>=1.4.1), bytestring, cassava, ClustalParser (>=1.2.1), cmdargs, containers, directory, edit-distance, either-unwrap, filepath, hierarchical-clustering, HTTP, http-conduit, http-types, hxt, matrix, network (<=2.8.0.0), parsec, process, pureMD5, random, RNAlien, silently, split, Taxonomy (>=1.0.3), text, text-metrics, time, transformers, vector, ViennaRNAParser (>=1.3.2) [details]
License	GPL-3.0-only
Copyright	Florian Eggenhofer
Author	Florian Eggenhofer
Maintainer	egg@informatik.uni-freiburg.de
Category	Bioinformatics
Source repo	head: git clone https://github.com/eggzilla/RNAlien this: git clone https://github.com/eggzilla/RNAlien/tree/1.7.0(tag 1.7.0)
Uploaded	by FlorianEggenhofer at 2019-08-29T08:41:36Z
Distributions	NixOS:1.7.0
Executables	RNAcentralHTTPRequest, cmsearchToBed, RNAlienStatistics, RNAlienScan, RNAlien
Downloads	8015 total (19 in the last 30 days)
Rating	2.0 (votes: 1) [estimated by Bayesian average]
Your Rating	λ λ λ
Status	Docs available [build log] Last success reported on 2019-08-29 [all 1 reports]

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