The RNAlien package
RNAlien is a tool for automatic construction of RNAfamily models from a single sequence.
It is available as a commandline tool, for testing or construction of few sequences the webservice can be used.
The source code of RNAlien, as well as the webserver is open source and available via GitHub (License GPL-3):
TaxonomyTools which can be used to visualise the organisms included in a RNAlien result can be found here (License GPL-3):
For instruction how to use RNAlien please see the Help page.
Dependencies:
Installation via cabal-install:
cabal install RNAlien
Properties
| Versions | 1.0.0, 1.1.0, 1.1.1, 1.1.3, 1.2.4, 1.2.5, 1.2.6, 1.2.8, 1.2.9, 1.3.0, 1.3.1, 1.3.7 |
|---|---|
| Dependencies | aeson, base (>=4.5 && <5), biocore, biofasta, BlastHTTP (>=1.2.1), blastxml (>=0.3.2), bytestring, cassava, ClustalParser (>=1.2.1), cmdargs, containers, directory, edit-distance, either-unwrap, EntrezHTTP (>=1.0.3), filepath, hierarchical-clustering, HTTP, http-conduit, http-types, hxt, matrix, network, parsec, process, pureMD5, random, RNAlien, split, Taxonomy (>=1.0.2), text, text-metrics, time, transformers, vector, ViennaRNAParser (>=1.3.2) [details] |
| License | GPL-3 |
| Author | Florian Eggenhofer |
| Maintainer | egg@tbi.univie.ac.at |
| Category | Bioinformatics |
| Source repository | head: git clone https://github.com/eggzilla/RNAlien this: git clone https://github.com/eggzilla/RNAlien/tree/1.3.7(tag 1.3.7) |
| Uploaded | Mon Mar 13 00:19:07 UTC 2017 by FlorianEggenhofer |
| Distributions | NixOS:1.3.7, Stackage:1.3.7, Tumbleweed:1.3.7 |
| Executables | RNAcentralHTTPRequest, cmsearchToBed, RNAlienStatistics, RNAlien |
| Downloads | 729 total (29 in the last 30 days) |
| Rating | 2.0 (1 ratings) [clear rating] |
| Status | Docs available [build log] Last success reported on 2017-03-13 [all 1 reports] Hackage Matrix CI |
Downloads
- RNAlien-1.3.7.tar.gz [browse] (Cabal source package)
- Package description (included in the package)