TaxonomyTools: Tool for parsing, processing, comparing and visualizing taxonomy data

[ bioinformatics, gpl, program ] [ Propose Tags ]

Taxonomy Tool utilizes functions from the Taxonomy library to provide

several commandline utilities for routine-tasks with taxonomy data.

Currently some tools accept either the NCBI taxonomy dump as input,

while other retrieve the data directly from the NCBI Entrez REST interface.

It is planned to support both datasources with each tool.

Usage instructions can be found in the README

Currently following Tools are included:

Versions [RSS] [faq] 1.0.0, 1.0.1
Dependencies aeson, base (>=4.5 && <5), bytestring, cassava (>=, cmdargs, directory, either-unwrap, EntrezHTTP (>=1.0.2), fgl, hxt, parsec, process, Taxonomy (>=1.0.2), text, vector [details]
License GPL-3.0-only
Author Florian Eggenhofer
Category Bioinformatics
Source repo head: git clone
this: git clone 1.0.1)
Uploaded by FlorianEggenhofer at 2017-01-26T09:41:48Z
Distributions NixOS:1.0.1
Executables TaxIdsDistance, TaxIds2Tree, TaxIds2TreeCompare, Accessions2TaxIds, TaxIds2Text
Downloads 1546 total (13 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
Last success reported on 2017-01-26 [all 3 reports]


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