algebraic-graphs-0.3: A library for algebraic graph construction and transformation

Algebra.Graph.Fold

Description

Alga is a library for algebraic construction and manipulation of graphs in Haskell. See this paper for the motivation behind the library, the underlying theory, and implementation details.

This module defines the Fold data type -- the Boehm-Berarducci encoding of algebraic graphs, which is used for generalised graph folding and for the implementation of polymorphic graph construction and transformation algorithms. Fold is an instance of type classes defined in modules Algebra.Graph.Class and Algebra.Graph.HigherKinded.Class, which can be used for polymorphic graph construction and manipulation.

Synopsis

# Boehm-Berarducci encoding of algebraic graphs

data Fold a Source #

The Fold data type is the Boehm-Berarducci encoding of the core graph construction primitives empty, vertex, overlay and connect. We define a Num instance as a convenient notation for working with graphs:

0           == vertex 0
1 + 2       == overlay (vertex 1) (vertex 2)
1 * 2       == connect (vertex 1) (vertex 2)
1 + 2 * 3   == overlay (vertex 1) (connect (vertex 2) (vertex 3))
1 * (2 + 3) == connect (vertex 1) (overlay (vertex 2) (vertex 3))

Note: the Num instance does not satisfy several "customary laws" of Num, which dictate that fromInteger 0 and fromInteger 1 should act as additive and multiplicative identities, and negate as additive inverse. Nevertheless, overloading fromInteger, + and * is very convenient when working with algebraic graphs; we hope that in future Haskell's Prelude will provide a more fine-grained class hierarchy for algebraic structures, which we would be able to utilise without violating any laws.

The Show instance is defined using basic graph construction primitives:

show (empty     :: Fold Int) == "empty"
show (1         :: Fold Int) == "vertex 1"
show (1 + 2     :: Fold Int) == "vertices [1,2]"
show (1 * 2     :: Fold Int) == "edge 1 2"
show (1 * 2 * 3 :: Fold Int) == "edges [(1,2),(1,3),(2,3)]"
show (1 * 2 + 3 :: Fold Int) == "overlay (vertex 3) (edge 1 2)"

The Eq instance is currently implemented using the AdjacencyMap as the canonical graph representation and satisfies all axioms of algebraic graphs:

• overlay is commutative and associative:

      x + y == y + x
x + (y + z) == (x + y) + z
• connect is associative and has empty as the identity:

  x * empty == x
empty * x == x
x * (y * z) == (x * y) * z
• connect distributes over overlay:

x * (y + z) == x * y + x * z
(x + y) * z == x * z + y * z
• connect can be decomposed:

x * y * z == x * y + x * z + y * z

The following useful theorems can be proved from the above set of axioms.

• overlay has empty as the identity and is idempotent:

  x + empty == x
empty + x == x
x + x == x
• Absorption and saturation of connect:

x * y + x + y == x * y
x * x * x == x * x

When specifying the time and memory complexity of graph algorithms, n will denote the number of vertices in the graph, m will denote the number of edges in the graph, and s will denote the size of the corresponding graph expression. For example, if g is a Fold then n, m and s can be computed as follows:

n == vertexCount g
m == edgeCount g
s == size g

Note that size counts all leaves of the expression:

vertexCount empty           == 0
size        empty           == 1
vertexCount (vertex x)      == 1
size        (vertex x)      == 1
vertexCount (empty + empty) == 0
size        (empty + empty) == 2

Converting a Fold to the corresponding AdjacencyMap takes O(s + m * log(m)) time and O(s + m) memory. This is also the complexity of the graph equality test, because it is currently implemented by converting graph expressions to canonical representations based on adjacency maps.

The total order on graphs is defined using size-lexicographic comparison:

• Compare the number of vertices. In case of a tie, continue.
• Compare the sets of vertices. In case of a tie, continue.
• Compare the number of edges. In case of a tie, continue.
• Compare the sets of edges.

Here are a few examples:

vertex 1 < vertex 2
vertex 3 < edge 1 2
vertex 1 < edge 1 1
edge 1 1 < edge 1 2
edge 1 2 < edge 1 1 + edge 2 2
edge 1 2 < edge 1 3

Note that the resulting order refines the isSubgraphOf relation and is compatible with overlay and connect operations:

isSubgraphOf x y ==> x <= y
empty <= x
x     <= x + y
x + y <= x * y
Instances
 Source # Instance detailsDefined in Algebra.Graph.Fold Methods(>>=) :: Fold a -> (a -> Fold b) -> Fold b #(>>) :: Fold a -> Fold b -> Fold b #return :: a -> Fold a #fail :: String -> Fold a # Source # Instance detailsDefined in Algebra.Graph.Fold Methodsfmap :: (a -> b) -> Fold a -> Fold b #(<$) :: a -> Fold b -> Fold a # Source # Instance detailsDefined in Algebra.Graph.Fold Methodspure :: a -> Fold a #(<*>) :: Fold (a -> b) -> Fold a -> Fold b #liftA2 :: (a -> b -> c) -> Fold a -> Fold b -> Fold c #(*>) :: Fold a -> Fold b -> Fold b #(<*) :: Fold a -> Fold b -> Fold a # Source # Instance detailsDefined in Algebra.Graph.Fold Methodsempty :: Fold a #(<|>) :: Fold a -> Fold a -> Fold a #some :: Fold a -> Fold [a] #many :: Fold a -> Fold [a] # Source # Instance detailsDefined in Algebra.Graph.Fold Methodsmzero :: Fold a #mplus :: Fold a -> Fold a -> Fold a # Source # Instance detailsDefined in Algebra.Graph.HigherKinded.Class Methodsconnect :: Fold a -> Fold a -> Fold a Source # Ord a => Eq (Fold a) Source # Instance detailsDefined in Algebra.Graph.Fold Methods(==) :: Fold a -> Fold a -> Bool #(/=) :: Fold a -> Fold a -> Bool # Num a => Num (Fold a) Source # Note: this does not satisfy the usual ring laws; see Fold for more details. Instance detailsDefined in Algebra.Graph.Fold Methods(+) :: Fold a -> Fold a -> Fold a #(-) :: Fold a -> Fold a -> Fold a #(*) :: Fold a -> Fold a -> Fold a #negate :: Fold a -> Fold a #abs :: Fold a -> Fold a #signum :: Fold a -> Fold a # Ord a => Ord (Fold a) Source # Instance detailsDefined in Algebra.Graph.Fold Methodscompare :: Fold a -> Fold a -> Ordering #(<) :: Fold a -> Fold a -> Bool #(<=) :: Fold a -> Fold a -> Bool #(>) :: Fold a -> Fold a -> Bool #(>=) :: Fold a -> Fold a -> Bool #max :: Fold a -> Fold a -> Fold a #min :: Fold a -> Fold a -> Fold a # (Ord a, Show a) => Show (Fold a) Source # Instance detailsDefined in Algebra.Graph.Fold MethodsshowsPrec :: Int -> Fold a -> ShowS #show :: Fold a -> String #showList :: [Fold a] -> ShowS # NFData a => NFData (Fold a) Source # Instance detailsDefined in Algebra.Graph.Fold Methodsrnf :: Fold a -> () # ToGraph (Fold a) Source # Instance detailsDefined in Algebra.Graph.Fold Associated Typestype ToVertex (Fold a) :: Type Source # MethodstoGraph :: Fold a -> Graph (ToVertex (Fold a)) Source #foldg :: r -> (ToVertex (Fold a) -> r) -> (r -> r -> r) -> (r -> r -> r) -> Fold a -> r Source #isEmpty :: Fold a -> Bool Source #size :: Fold a -> Int Source #hasVertex :: ToVertex (Fold a) -> Fold a -> Bool Source #hasEdge :: ToVertex (Fold a) -> ToVertex (Fold a) -> Fold a -> Bool Source #edgeCount :: Fold a -> Int Source #vertexList :: Fold a -> [ToVertex (Fold a)] Source #edgeList :: Fold a -> [(ToVertex (Fold a), ToVertex (Fold a))] Source #vertexSet :: Fold a -> Set (ToVertex (Fold a)) Source #edgeSet :: Fold a -> Set (ToVertex (Fold a), ToVertex (Fold a)) Source #preSet :: ToVertex (Fold a) -> Fold a -> Set (ToVertex (Fold a)) Source #preIntSet :: Int -> Fold a -> IntSet Source #postSet :: ToVertex (Fold a) -> Fold a -> Set (ToVertex (Fold a)) Source #postIntSet :: Int -> Fold a -> IntSet Source #adjacencyList :: Fold a -> [(ToVertex (Fold a), [ToVertex (Fold a)])] Source #adjacencyMap :: Fold a -> Map (ToVertex (Fold a)) (Set (ToVertex (Fold a))) Source #adjacencyMapTranspose :: Fold a -> Map (ToVertex (Fold a)) (Set (ToVertex (Fold a))) Source #dfsForest :: Fold a -> Forest (ToVertex (Fold a)) Source #dfsForestFrom :: [ToVertex (Fold a)] -> Fold a -> Forest (ToVertex (Fold a)) Source #dfs :: [ToVertex (Fold a)] -> Fold a -> [ToVertex (Fold a)] Source #reachable :: ToVertex (Fold a) -> Fold a -> [ToVertex (Fold a)] Source #topSort :: Fold a -> Maybe [ToVertex (Fold a)] Source #isAcyclic :: Fold a -> Bool Source #isDfsForestOf :: Forest (ToVertex (Fold a)) -> Fold a -> Bool Source #isTopSortOf :: [ToVertex (Fold a)] -> Fold a -> Bool Source # Graph (Fold a) Source # Instance detailsDefined in Algebra.Graph.Class Associated Typestype Vertex (Fold a) :: Type Source # Methodsvertex :: Vertex (Fold a) -> Fold a Source #overlay :: Fold a -> Fold a -> Fold a Source #connect :: Fold a -> Fold a -> Fold a Source # type ToVertex (Fold a) Source # Instance detailsDefined in Algebra.Graph.Fold type ToVertex (Fold a) = a type Vertex (Fold a) Source # Instance detailsDefined in Algebra.Graph.Class type Vertex (Fold a) = a # Basic graph construction primitives Construct the empty graph. Complexity: O(1) time, memory and size. isEmpty empty == True hasVertex x empty == False vertexCount empty == 0 edgeCount empty == 0 size empty == 1  vertex :: a -> Fold a Source # Construct the graph comprising a single isolated vertex. Complexity: O(1) time, memory and size. isEmpty (vertex x) == False hasVertex x (vertex x) == True vertexCount (vertex x) == 1 edgeCount (vertex x) == 0 size (vertex x) == 1  edge :: a -> a -> Fold a Source # Construct the graph comprising a single edge. Complexity: O(1) time, memory and size. edge x y == connect (vertex x) (vertex y) hasEdge x y (edge x y) == True edgeCount (edge x y) == 1 vertexCount (edge 1 1) == 1 vertexCount (edge 1 2) == 2  overlay :: Fold a -> Fold a -> Fold a Source # Overlay two graphs. This is a commutative, associative and idempotent operation with the identity empty. Complexity: O(1) time and memory, O(s1 + s2) size. isEmpty (overlay x y) == isEmpty x && isEmpty y hasVertex z (overlay x y) == hasVertex z x || hasVertex z y vertexCount (overlay x y) >= vertexCount x vertexCount (overlay x y) <= vertexCount x + vertexCount y edgeCount (overlay x y) >= edgeCount x edgeCount (overlay x y) <= edgeCount x + edgeCount y size (overlay x y) == size x + size y vertexCount (overlay 1 2) == 2 edgeCount (overlay 1 2) == 0  connect :: Fold a -> Fold a -> Fold a Source # Connect two graphs. This is an associative operation with the identity empty, which distributes over overlay and obeys the decomposition axiom. Complexity: O(1) time and memory, O(s1 + s2) size. Note that the number of edges in the resulting graph is quadratic with respect to the number of vertices of the arguments: m = O(m1 + m2 + n1 * n2). isEmpty (connect x y) == isEmpty x && isEmpty y hasVertex z (connect x y) == hasVertex z x || hasVertex z y vertexCount (connect x y) >= vertexCount x vertexCount (connect x y) <= vertexCount x + vertexCount y edgeCount (connect x y) >= edgeCount x edgeCount (connect x y) >= edgeCount y edgeCount (connect x y) >= vertexCount x * vertexCount y edgeCount (connect x y) <= vertexCount x * vertexCount y + edgeCount x + edgeCount y size (connect x y) == size x + size y vertexCount (connect 1 2) == 2 edgeCount (connect 1 2) == 1  vertices :: [a] -> Fold a Source # Construct the graph comprising a given list of isolated vertices. Complexity: O(L) time, memory and size, where L is the length of the given list. vertices [] == empty vertices [x] == vertex x hasVertex x . vertices == elem x vertexCount . vertices == length . nub vertexSet . vertices == Set.fromList  edges :: [(a, a)] -> Fold a Source # Construct the graph from a list of edges. Complexity: O(L) time, memory and size, where L is the length of the given list. edges [] == empty edges [(x,y)] == edge x y edgeCount . edges == length . nub  overlays :: [Fold a] -> Fold a Source # Overlay a given list of graphs. Complexity: O(L) time and memory, and O(S) size, where L is the length of the given list, and S is the sum of sizes of the graphs in the list. overlays [] == empty overlays [x] == x overlays [x,y] == overlay x y overlays == foldr overlay empty isEmpty . overlays == all isEmpty  connects :: [Fold a] -> Fold a Source # Connect a given list of graphs. Complexity: O(L) time and memory, and O(S) size, where L is the length of the given list, and S is the sum of sizes of the graphs in the list. connects [] == empty connects [x] == x connects [x,y] == connect x y connects == foldr connect empty isEmpty . connects == all isEmpty  # Graph folding foldg :: b -> (a -> b) -> (b -> b -> b) -> (b -> b -> b) -> Fold a -> b Source # Generalised Graph folding: recursively collapse a Graph by applying the provided functions to the leaves and internal nodes of the expression. The order of arguments is: empty, vertex, overlay and connect. Complexity: O(s) applications of given functions. As an example, the complexity of size is O(s), since all functions have cost O(1). foldg empty vertex overlay connect == id foldg empty vertex overlay (flip connect) == transpose foldg 1 (const 1) (+) (+) == size foldg True (const False) (&&) (&&) == isEmpty foldg False (== x) (||) (||) == hasVertex x  # Relations on graphs isSubgraphOf :: Ord a => Fold a -> Fold a -> Bool Source # The isSubgraphOf function takes two graphs and returns True if the first graph is a subgraph of the second. Complexity: O(s + m * log(m)) time. Note that the number of edges m of a graph can be quadratic with respect to the expression size s. isSubgraphOf empty x == True isSubgraphOf (vertex x) empty == False isSubgraphOf x (overlay x y) == True isSubgraphOf (overlay x y) (connect x y) == True isSubgraphOf (path xs) (circuit xs) == True isSubgraphOf x y ==> x <= y  # Graph properties isEmpty :: Fold a -> Bool Source # Check if a graph is empty. A convenient alias for null. Complexity: O(s) time. isEmpty empty == True isEmpty (overlay empty empty) == True isEmpty (vertex x) == False isEmpty (removeVertex x$ vertex x) == True
isEmpty (removeEdge x y \$ edge x y) == False


size :: Fold a -> Int Source #

The size of a graph, i.e. the number of leaves of the expression including empty leaves. Complexity: O(s) time.

size empty         == 1
size (vertex x)    == 1
size (overlay x y) == size x + size y
size (connect x y) == size x + size y
size x             >= 1
size x             >= vertexCount x


hasVertex :: Eq a => a -> Fold a -> Bool Source #

Check if a graph contains a given vertex. Complexity: O(s) time.

hasVertex x empty            == False
hasVertex x (vertex x)       == True
hasVertex 1 (vertex 2)       == False
hasVertex x . removeVertex x == const False


hasEdge :: Eq a => a -> a -> Fold a -> Bool Source #

Check if a graph contains a given edge. Complexity: O(s) time.

hasEdge x y empty            == False
hasEdge x y (vertex z)       == False
hasEdge x y (edge x y)       == True
hasEdge x y . removeEdge x y == const False
hasEdge x y                  == elem (x,y) . edgeList


vertexCount :: Ord a => Fold a -> Int Source #

The number of vertices in a graph. Complexity: O(s * log(n)) time.

vertexCount empty             ==  0
vertexCount (vertex x)        ==  1
vertexCount                   ==  length . vertexList
vertexCount x < vertexCount y ==> x < y


edgeCount :: Ord a => Fold a -> Int Source #

The number of edges in a graph. Complexity: O(s + m * log(m)) time. Note that the number of edges m of a graph can be quadratic with respect to the expression size s.

edgeCount empty      == 0
edgeCount (vertex x) == 0
edgeCount (edge x y) == 1
edgeCount            == length . edgeList


vertexList :: Ord a => Fold a -> [a] Source #

The sorted list of vertices of a given graph. Complexity: O(s * log(n)) time and O(n) memory.

vertexList empty      == []
vertexList (vertex x) == [x]
vertexList . vertices == nub . sort


edgeList :: Ord a => Fold a -> [(a, a)] Source #

The sorted list of edges of a graph. Complexity: O(s + m * log(m)) time and O(m) memory. Note that the number of edges m of a graph can be quadratic with respect to the expression size s.

edgeList empty          == []
edgeList (vertex x)     == []
edgeList (edge x y)     == [(x,y)]
edgeList (star 2 [3,1]) == [(2,1), (2,3)]
edgeList . edges        == nub . sort
edgeList . transpose    == sort . map swap . edgeList


vertexSet :: Ord a => Fold a -> Set a Source #

The set of vertices of a given graph. Complexity: O(s * log(n)) time and O(n) memory.

vertexSet empty      == Set.empty
vertexSet . vertex   == Set.singleton
vertexSet . vertices == Set.fromList


edgeSet :: Ord a => Fold a -> Set (a, a) Source #

The set of edges of a given graph. Complexity: O(s * log(m)) time and O(m) memory.

edgeSet empty      == Set.empty
edgeSet (vertex x) == Set.empty
edgeSet (edge x y) == Set.singleton (x,y)
edgeSet . edges    == Set.fromList


adjacencyList :: Ord a => Fold a -> [(a, [a])] Source #

The sorted adjacency list of a graph. Complexity: O(s + m * log(m)) time. Note that the number of edges m of a graph can be quadratic with respect to the expression size s.

adjacencyList empty          == []
adjacencyList (vertex x)     == [(x, [])]
adjacencyList (edge 1 2)     == [(1, [2]), (2, [])]
adjacencyList (star 2 [3,1]) == [(1, []), (2, [1,3]), (3, [])]
stars . adjacencyList        == id


# Standard families of graphs

path :: [a] -> Fold a Source #

The path on a list of vertices. Complexity: O(L) time, memory and size, where L is the length of the given list.

path []        == empty
path [x]       == vertex x
path [x,y]     == edge x y
path . reverse == transpose . path


circuit :: [a] -> Fold a Source #

The circuit on a list of vertices. Complexity: O(L) time, memory and size, where L is the length of the given list.

circuit []        == empty
circuit [x]       == edge x x
circuit [x,y]     == edges [(x,y), (y,x)]
circuit . reverse == transpose . circuit


clique :: [a] -> Fold a Source #

The clique on a list of vertices. Complexity: O(L) time, memory and size, where L is the length of the given list.

clique []         == empty
clique [x]        == vertex x
clique [x,y]      == edge x y
clique [x,y,z]    == edges [(x,y), (x,z), (y,z)]
clique (xs ++ ys) == connect (clique xs) (clique ys)
clique . reverse  == transpose . clique


biclique :: [a] -> [a] -> Fold a Source #

The biclique on two lists of vertices. Complexity: O(L1 + L2) time, memory and size, where L1 and L2 are the lengths of the given lists.

biclique []      []      == empty
biclique [x]     []      == vertex x
biclique []      [y]     == vertex y
biclique [x1,x2] [y1,y2] == edges [(x1,y1), (x1,y2), (x2,y1), (x2,y2)]
biclique xs      ys      == connect (vertices xs) (vertices ys)


star :: a -> [a] -> Fold a Source #

The star formed by a centre vertex connected to a list of leaves. Complexity: O(L) time, memory and size, where L is the length of the given list.

star x []    == vertex x
star x [y]   == edge x y
star x [y,z] == edges [(x,y), (x,z)]
star x ys    == connect (vertex x) (vertices ys)


stars :: [(a, [a])] -> Fold a Source #

The stars formed by overlaying a list of stars. An inverse of adjacencyList. Complexity: O(L) time, memory and size, where L is the total size of the input.

stars []                      == empty
stars [(x, [])]               == vertex x
stars [(x, [y])]              == edge x y
stars [(x, ys)]               == star x ys
stars                         == overlays . map (uncurry star)
stars . adjacencyList         == id
overlay (stars xs) (stars ys) == stars (xs ++ ys)


# Graph transformation

removeVertex :: Eq a => a -> Fold a -> Fold a Source #

Remove a vertex from a given graph. Complexity: O(s) time, memory and size.

removeVertex x (vertex x)       == empty
removeVertex 1 (vertex 2)       == vertex 2
removeVertex x (edge x x)       == empty
removeVertex 1 (edge 1 2)       == vertex 2
removeVertex x . removeVertex x == removeVertex x


removeEdge :: Eq a => a -> a -> Fold a -> Fold a Source #

Remove an edge from a given graph. Complexity: O(s) time, memory and size.

removeEdge x y (edge x y)       == vertices [x,y]
removeEdge x y . removeEdge x y == removeEdge x y
removeEdge x y . removeVertex x == removeVertex x
removeEdge 1 1 (1 * 1 * 2 * 2)  == 1 * 2 * 2
removeEdge 1 2 (1 * 1 * 2 * 2)  == 1 * 1 + 2 * 2
size (removeEdge x y z)         <= 3 * size z


transpose :: Fold a -> Fold a Source #

Transpose a given graph. Complexity: O(s) time, memory and size.

transpose empty       == empty
transpose (vertex x)  == vertex x
transpose (edge x y)  == edge y x
transpose . transpose == id
transpose (box x y)   == box (transpose x) (transpose y)
edgeList . transpose  == sort . map swap . edgeList


induce :: (a -> Bool) -> Fold a -> Fold a Source #

Construct the induced subgraph of a given graph by removing the vertices that do not satisfy a given predicate. Complexity: O(s) time, memory and size, assuming that the predicate takes O(1) to be evaluated.

induce (const True ) x      == x
induce (const False) x      == empty
induce (/= x)               == removeVertex x
induce p . induce q         == induce (\x -> p x && q x)
isSubgraphOf (induce p x) x == True


simplify :: Ord a => Fold a -> Fold a Source #

Simplify a graph expression. Semantically, this is the identity function, but it simplifies a given polymorphic graph expression according to the laws of the algebra. The function does not compute the simplest possible expression, but uses heuristics to obtain useful simplifications in reasonable time. Complexity: the function performs O(s) graph comparisons. It is guaranteed that the size of the result does not exceed the size of the given expression. Below the operator ~> denotes the is simplified to relation.

simplify             == id
size (simplify x)    <= size x
simplify empty       ~> empty
simplify 1           ~> 1
simplify (1 + 1)     ~> 1
simplify (1 + 2 + 1) ~> 1 + 2
simplify (1 * 1 * 1) ~> 1 * 1