{-# LANGUAGE DeriveGeneric #-}
{-# LANGUAGE DuplicateRecordFields #-}
{-# LANGUAGE NamedFieldPuns #-}
{-# LANGUAGE OverloadedStrings #-}
{-# LANGUAGE RecordWildCards #-}
{-# LANGUAGE StrictData #-}
{-# LANGUAGE NoImplicitPrelude #-}
{-# OPTIONS_GHC -fno-warn-unused-imports #-}
{-# OPTIONS_GHC -fno-warn-unused-matches #-}

-- Derived from AWS service descriptions, licensed under Apache 2.0.

-- |
-- Module      : Amazonka.Omics.Types.SequenceInformation
-- Copyright   : (c) 2013-2023 Brendan Hay
-- License     : Mozilla Public License, v. 2.0.
-- Maintainer  : Brendan Hay
-- Stability   : auto-generated
-- Portability : non-portable (GHC extensions)
module Amazonka.Omics.Types.SequenceInformation where

import qualified Amazonka.Core as Core
import qualified Amazonka.Core.Lens.Internal as Lens
import qualified Amazonka.Data as Data
import qualified Amazonka.Prelude as Prelude

-- | Details about a sequence.
--
-- /See:/ 'newSequenceInformation' smart constructor.
data SequenceInformation = SequenceInformation'
  { -- | The sequence\'s alignment setting.
    SequenceInformation -> Maybe Text
alignment :: Prelude.Maybe Prelude.Text,
    -- | Where the sequence originated.
    SequenceInformation -> Maybe Text
generatedFrom :: Prelude.Maybe Prelude.Text,
    -- | The sequence\'s total base count.
    SequenceInformation -> Maybe Integer
totalBaseCount :: Prelude.Maybe Prelude.Integer,
    -- | The sequence\'s total read count.
    SequenceInformation -> Maybe Integer
totalReadCount :: Prelude.Maybe Prelude.Integer
  }
  deriving (SequenceInformation -> SequenceInformation -> Bool
forall a. (a -> a -> Bool) -> (a -> a -> Bool) -> Eq a
/= :: SequenceInformation -> SequenceInformation -> Bool
$c/= :: SequenceInformation -> SequenceInformation -> Bool
== :: SequenceInformation -> SequenceInformation -> Bool
$c== :: SequenceInformation -> SequenceInformation -> Bool
Prelude.Eq, ReadPrec [SequenceInformation]
ReadPrec SequenceInformation
Int -> ReadS SequenceInformation
ReadS [SequenceInformation]
forall a.
(Int -> ReadS a)
-> ReadS [a] -> ReadPrec a -> ReadPrec [a] -> Read a
readListPrec :: ReadPrec [SequenceInformation]
$creadListPrec :: ReadPrec [SequenceInformation]
readPrec :: ReadPrec SequenceInformation
$creadPrec :: ReadPrec SequenceInformation
readList :: ReadS [SequenceInformation]
$creadList :: ReadS [SequenceInformation]
readsPrec :: Int -> ReadS SequenceInformation
$creadsPrec :: Int -> ReadS SequenceInformation
Prelude.Read, Int -> SequenceInformation -> ShowS
[SequenceInformation] -> ShowS
SequenceInformation -> String
forall a.
(Int -> a -> ShowS) -> (a -> String) -> ([a] -> ShowS) -> Show a
showList :: [SequenceInformation] -> ShowS
$cshowList :: [SequenceInformation] -> ShowS
show :: SequenceInformation -> String
$cshow :: SequenceInformation -> String
showsPrec :: Int -> SequenceInformation -> ShowS
$cshowsPrec :: Int -> SequenceInformation -> ShowS
Prelude.Show, forall x. Rep SequenceInformation x -> SequenceInformation
forall x. SequenceInformation -> Rep SequenceInformation x
forall a.
(forall x. a -> Rep a x) -> (forall x. Rep a x -> a) -> Generic a
$cto :: forall x. Rep SequenceInformation x -> SequenceInformation
$cfrom :: forall x. SequenceInformation -> Rep SequenceInformation x
Prelude.Generic)

-- |
-- Create a value of 'SequenceInformation' with all optional fields omitted.
--
-- Use <https://hackage.haskell.org/package/generic-lens generic-lens> or <https://hackage.haskell.org/package/optics optics> to modify other optional fields.
--
-- The following record fields are available, with the corresponding lenses provided
-- for backwards compatibility:
--
-- 'alignment', 'sequenceInformation_alignment' - The sequence\'s alignment setting.
--
-- 'generatedFrom', 'sequenceInformation_generatedFrom' - Where the sequence originated.
--
-- 'totalBaseCount', 'sequenceInformation_totalBaseCount' - The sequence\'s total base count.
--
-- 'totalReadCount', 'sequenceInformation_totalReadCount' - The sequence\'s total read count.
newSequenceInformation ::
  SequenceInformation
newSequenceInformation :: SequenceInformation
newSequenceInformation =
  SequenceInformation'
    { $sel:alignment:SequenceInformation' :: Maybe Text
alignment = forall a. Maybe a
Prelude.Nothing,
      $sel:generatedFrom:SequenceInformation' :: Maybe Text
generatedFrom = forall a. Maybe a
Prelude.Nothing,
      $sel:totalBaseCount:SequenceInformation' :: Maybe Integer
totalBaseCount = forall a. Maybe a
Prelude.Nothing,
      $sel:totalReadCount:SequenceInformation' :: Maybe Integer
totalReadCount = forall a. Maybe a
Prelude.Nothing
    }

-- | The sequence\'s alignment setting.
sequenceInformation_alignment :: Lens.Lens' SequenceInformation (Prelude.Maybe Prelude.Text)
sequenceInformation_alignment :: Lens' SequenceInformation (Maybe Text)
sequenceInformation_alignment = forall s a b t. (s -> a) -> (s -> b -> t) -> Lens s t a b
Lens.lens (\SequenceInformation' {Maybe Text
alignment :: Maybe Text
$sel:alignment:SequenceInformation' :: SequenceInformation -> Maybe Text
alignment} -> Maybe Text
alignment) (\s :: SequenceInformation
s@SequenceInformation' {} Maybe Text
a -> SequenceInformation
s {$sel:alignment:SequenceInformation' :: Maybe Text
alignment = Maybe Text
a} :: SequenceInformation)

-- | Where the sequence originated.
sequenceInformation_generatedFrom :: Lens.Lens' SequenceInformation (Prelude.Maybe Prelude.Text)
sequenceInformation_generatedFrom :: Lens' SequenceInformation (Maybe Text)
sequenceInformation_generatedFrom = forall s a b t. (s -> a) -> (s -> b -> t) -> Lens s t a b
Lens.lens (\SequenceInformation' {Maybe Text
generatedFrom :: Maybe Text
$sel:generatedFrom:SequenceInformation' :: SequenceInformation -> Maybe Text
generatedFrom} -> Maybe Text
generatedFrom) (\s :: SequenceInformation
s@SequenceInformation' {} Maybe Text
a -> SequenceInformation
s {$sel:generatedFrom:SequenceInformation' :: Maybe Text
generatedFrom = Maybe Text
a} :: SequenceInformation)

-- | The sequence\'s total base count.
sequenceInformation_totalBaseCount :: Lens.Lens' SequenceInformation (Prelude.Maybe Prelude.Integer)
sequenceInformation_totalBaseCount :: Lens' SequenceInformation (Maybe Integer)
sequenceInformation_totalBaseCount = forall s a b t. (s -> a) -> (s -> b -> t) -> Lens s t a b
Lens.lens (\SequenceInformation' {Maybe Integer
totalBaseCount :: Maybe Integer
$sel:totalBaseCount:SequenceInformation' :: SequenceInformation -> Maybe Integer
totalBaseCount} -> Maybe Integer
totalBaseCount) (\s :: SequenceInformation
s@SequenceInformation' {} Maybe Integer
a -> SequenceInformation
s {$sel:totalBaseCount:SequenceInformation' :: Maybe Integer
totalBaseCount = Maybe Integer
a} :: SequenceInformation)

-- | The sequence\'s total read count.
sequenceInformation_totalReadCount :: Lens.Lens' SequenceInformation (Prelude.Maybe Prelude.Integer)
sequenceInformation_totalReadCount :: Lens' SequenceInformation (Maybe Integer)
sequenceInformation_totalReadCount = forall s a b t. (s -> a) -> (s -> b -> t) -> Lens s t a b
Lens.lens (\SequenceInformation' {Maybe Integer
totalReadCount :: Maybe Integer
$sel:totalReadCount:SequenceInformation' :: SequenceInformation -> Maybe Integer
totalReadCount} -> Maybe Integer
totalReadCount) (\s :: SequenceInformation
s@SequenceInformation' {} Maybe Integer
a -> SequenceInformation
s {$sel:totalReadCount:SequenceInformation' :: Maybe Integer
totalReadCount = Maybe Integer
a} :: SequenceInformation)

instance Data.FromJSON SequenceInformation where
  parseJSON :: Value -> Parser SequenceInformation
parseJSON =
    forall a. String -> (Object -> Parser a) -> Value -> Parser a
Data.withObject
      String
"SequenceInformation"
      ( \Object
x ->
          Maybe Text
-> Maybe Text
-> Maybe Integer
-> Maybe Integer
-> SequenceInformation
SequenceInformation'
            forall (f :: * -> *) a b. Functor f => (a -> b) -> f a -> f b
Prelude.<$> (Object
x forall a. FromJSON a => Object -> Key -> Parser (Maybe a)
Data..:? Key
"alignment")
            forall (f :: * -> *) a b. Applicative f => f (a -> b) -> f a -> f b
Prelude.<*> (Object
x forall a. FromJSON a => Object -> Key -> Parser (Maybe a)
Data..:? Key
"generatedFrom")
            forall (f :: * -> *) a b. Applicative f => f (a -> b) -> f a -> f b
Prelude.<*> (Object
x forall a. FromJSON a => Object -> Key -> Parser (Maybe a)
Data..:? Key
"totalBaseCount")
            forall (f :: * -> *) a b. Applicative f => f (a -> b) -> f a -> f b
Prelude.<*> (Object
x forall a. FromJSON a => Object -> Key -> Parser (Maybe a)
Data..:? Key
"totalReadCount")
      )

instance Prelude.Hashable SequenceInformation where
  hashWithSalt :: Int -> SequenceInformation -> Int
hashWithSalt Int
_salt SequenceInformation' {Maybe Integer
Maybe Text
totalReadCount :: Maybe Integer
totalBaseCount :: Maybe Integer
generatedFrom :: Maybe Text
alignment :: Maybe Text
$sel:totalReadCount:SequenceInformation' :: SequenceInformation -> Maybe Integer
$sel:totalBaseCount:SequenceInformation' :: SequenceInformation -> Maybe Integer
$sel:generatedFrom:SequenceInformation' :: SequenceInformation -> Maybe Text
$sel:alignment:SequenceInformation' :: SequenceInformation -> Maybe Text
..} =
    Int
_salt
      forall a. Hashable a => Int -> a -> Int
`Prelude.hashWithSalt` Maybe Text
alignment
      forall a. Hashable a => Int -> a -> Int
`Prelude.hashWithSalt` Maybe Text
generatedFrom
      forall a. Hashable a => Int -> a -> Int
`Prelude.hashWithSalt` Maybe Integer
totalBaseCount
      forall a. Hashable a => Int -> a -> Int
`Prelude.hashWithSalt` Maybe Integer
totalReadCount

instance Prelude.NFData SequenceInformation where
  rnf :: SequenceInformation -> ()
rnf SequenceInformation' {Maybe Integer
Maybe Text
totalReadCount :: Maybe Integer
totalBaseCount :: Maybe Integer
generatedFrom :: Maybe Text
alignment :: Maybe Text
$sel:totalReadCount:SequenceInformation' :: SequenceInformation -> Maybe Integer
$sel:totalBaseCount:SequenceInformation' :: SequenceInformation -> Maybe Integer
$sel:generatedFrom:SequenceInformation' :: SequenceInformation -> Maybe Text
$sel:alignment:SequenceInformation' :: SequenceInformation -> Maybe Text
..} =
    forall a. NFData a => a -> ()
Prelude.rnf Maybe Text
alignment
      seq :: forall a b. a -> b -> b
`Prelude.seq` forall a. NFData a => a -> ()
Prelude.rnf Maybe Text
generatedFrom
      seq :: forall a b. a -> b -> b
`Prelude.seq` forall a. NFData a => a -> ()
Prelude.rnf Maybe Integer
totalBaseCount
      seq :: forall a b. a -> b -> b
`Prelude.seq` forall a. NFData a => a -> ()
Prelude.rnf Maybe Integer
totalReadCount