bio-0.4.4: A bioinformatics library Source code Contents Index

Bio.Location.Strand

Description

Utilities for manipulating nucleotide sequences and locations on nucleotide sequences that occur on a forward or a reverse-complement strand.

Synopsis

data Strand = Fwd | RevCompl class Stranded s where revCompl :: s -> s stranded :: Stranded s => Strand -> s -> s

Documentation

data Strand Source

Sequence strand Constructors Fwd RevCompl Instances Bounded Strand Enum Strand Eq Strand Ord Strand Read Strand Show Strand Ix Strand Stranded Strand

class Stranded s where Source

A nucleotide sequence or location on a nucleotide sequence that lies on a specific strand and has an orientation. Methods revCompl :: s -> s Source Instances Stranded Char Stranded ByteString Stranded Strand Stranded Pos Stranded ContigLoc Stranded Loc

stranded :: Stranded s => Strand -> s -> s Source

Convert the orientation of a Stranded thing based on a specified Strand

Produced by Haddock version 2.6.1