Contents
Index
bio-0.4.7: A bioinformatics library
A
B
C
D
E
F
G
H
I
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
!
?
Index - P
packFlows
Bio.Sequence.SFF
pairend
Bio.Alignment.Soap
pam30
Bio.Alignment.Matrices
pam70
Bio.Alignment.Matrices
parentIds
Bio.GFF3.Feature
parents
1 (Function)
Bio.GFF3.FeatureHier
2 (Function)
Bio.GFF3.FeatureHierSequences
parentsM
Bio.GFF3.FeatureHier
parse
1 (Function)
Bio.Alignment.Blast
2 (Function)
Bio.Sequence.FastQ
3 (Function)
Bio.Alignment.Bowtie
4 (Function)
Bio.Alignment.Soap
5 (Function)
Bio.GFF3.Feature
6 (Function)
Bio.GFF3.FeatureHierSequences
parseMismatch
Bio.Alignment.Soap
parsePSL
Bio.Alignment.PSL
parseWithFasta
Bio.GFF3.Feature
perSeq
Bio.Location.OnSeq
perSeqUpdate
Bio.Location.OnSeq
phase
Bio.GFF3.Feature
Phe
Bio.Sequence.SeqData
,
Bio.Sequence
Plus
Bio.Alignment.BlastData
,
Bio.Alignment.BlastFlat
polar
Bio.Sequence.AminoProperties
Pos
1 (Type/Class)
Bio.Location.Position
2 (Data Constructor)
Bio.Location.Position
posInto
1 (Function)
Bio.Location.ContigLocation
2 (Function)
Bio.Location.Location
positive
Bio.Sequence.AminoProperties
posOutof
1 (Function)
Bio.Location.ContigLocation
2 (Function)
Bio.Location.Location
Pro
Bio.Sequence.SeqData
,
Bio.Sequence
Proc
Bio.Sequence.GeneOntology
, Bio.Sequence.GOA
progressive
Bio.Alignment.Multiple
PSL
1 (Type/Class)
Bio.Alignment.PSL
2 (Data Constructor)
Bio.Alignment.PSL
pslHeader
Bio.Alignment.PSL
ptest
Bio.Alignment.ACE
putSeqLn
Bio.Sequence.SeqData