rbToSequence | Bio.Sequence.SFF |
RCA | Bio.Sequence.GeneOntology, Bio.Sequence.GOA |
rcontig | Bio.Sequence.HashWord, Bio.Sequence |
rcpacked | Bio.Sequence.HashWord, Bio.Sequence |
read2Bit | Bio.Sequence.TwoBit, Bio.Sequence |
readACE | Bio.Alignment.ACE |
readbase | Bio.Alignment.Bowtie |
readBED | Bio.Alignment.BED |
ReadBlock | |
1 (Type/Class) | Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF |
readFasta | Bio.Sequence.Fasta, Bio.Sequence |
readFastaQual | Bio.Sequence.Fasta, Bio.Sequence |
readFastQ | Bio.Sequence.FastQ, Bio.Sequence |
readGO | Bio.Sequence.GOA |
readGOA | Bio.Sequence.GeneOntology, Bio.Sequence.GOA |
ReadHeader | |
1 (Type/Class) | Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF |
readIllumina | Bio.Sequence.FastQ, Bio.Sequence |
ReadName | |
1 (Type/Class) | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
2 (Data Constructor) | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
readnt | Bio.Alignment.Soap |
readNuc | Bio.Sequence |
readObo | Bio.Sequence.GeneOntology, Bio.Sequence.GOA |
readPhd | Bio.Sequence.Phd, Bio.Sequence |
readProt | Bio.Sequence |
readPSL | Bio.Alignment.PSL |
readQual | Bio.Sequence.Fasta, Bio.Sequence |
reads | Bio.Alignment.ACE |
readSangerQ | Bio.Sequence.FastQ, Bio.Sequence |
readSFF | Bio.Sequence.SFF |
readTerms | Bio.Sequence.GeneOntology, Bio.Sequence.GOA |
readXML | |
1 (Function) | Bio.Alignment.BlastXML |
2 (Function) | Bio.Alignment.BlastFlat |
read_header | Bio.Sequence.SFF |
read_name | Bio.Sequence.SFF |
recoverSFF | Bio.Sequence.SFF |
refbase | Bio.Alignment.Bowtie |
refCLoc | Bio.Alignment.Bowtie |
refCSeqLoc | |
1 (Function) | Bio.Alignment.Bowtie |
2 (Function) | Bio.Alignment.Soap |
refname | |
1 (Function) | Bio.Alignment.Bowtie |
2 (Function) | Bio.Alignment.Soap |
refnt | Bio.Alignment.Soap |
refSeqLoc | |
1 (Function) | Bio.Alignment.Bowtie |
2 (Function) | Bio.Alignment.Soap |
refSeqPos | |
1 (Function) | Bio.Alignment.Bowtie |
2 (Function) | Bio.Alignment.Soap |
refstart | Bio.Alignment.Soap |
region | Bio.Sequence.SFF_name, Bio.Sequence.SFF |
removePrefix | Bio.Sequence.KEGG |
Repl | Bio.Alignment.AlignData |
repmatch | Bio.Alignment.PSL |
results | Bio.Alignment.BlastData, Bio.Alignment.BlastFlat |
Rev | |
1 (Data Constructor) | Bio.Alignment.AlignData |
2 (Data Constructor) | Bio.Alignment.BED |
RevCompl | Bio.Location.Strand |
revCompl | Bio.Location.Strand |
revcompl | Bio.Sequence.SeqData, Bio.Sequence |
revcompl' | Bio.Sequence.SeqData, Bio.Sequence |
rRNAs | Bio.GFF3.SGD |
runGFF | Bio.GFF3.FeatureHierSequences |
runGFFIO | Bio.GFF3.FeatureHierSequences |