Build #3 for bioinformatics-toolkit-0.2.1

[all reports]

Package bioinformatics-toolkit-0.2.1
Install DependencyFailed shelly-1.6.8.1
Docs NotTried
Tests NotTried
Time submitted 2016-11-21 21:57:40.366016 UTC
Compiler ghc-8.0.1.20161018
OS linux
Arch x86_64
Dependencies IntervalMap-0.5.2.0, aeson-1.0.2.1, aeson-pretty-0.8.2, base-4.9.0.0, binary-0.8.3.0, bytestring-0.10.8.1, bytestring-lexing-0.5.0.2, clustering-0.3.1, colour-2.3.3, conduit-combinators-1.0.8.2, containers-0.5.7.1, data-default-class-0.1.2.0, double-conversion-2.0.1.0, hexpat-0.20.9, http-conduit-2.2.3, matrices-0.4.3, mtl-2.2.1, palette-0.1.0.4, parallel-3.2.1.0, primitive-0.6.1.0, samtools-0.2.4.3, split-0.2.3.1, statistics-0.13.3.0, text-1.2.2.1, transformers-0.5.2.0, unordered-containers-0.2.7.1, vector-0.11.0.0, vector-algorithms-0.7.0.1, word8-0.1.2, base-4.9.0.0, bytestring-0.10.8.1, clustering-0.3.1, data-default-class-0.1.2.0, optparse-applicative-0.13.0.0, split-0.2.3.1, base-4.9.0.0, shelly-1.6.8.1, text-1.2.2.1, base-4.9.0.0, bytestring-0.10.8.1
Flags none

Build log

[view raw]

Resolving dependencies...
Configuring IntervalMap-0.5.2.0...
Configuring List-0.5.2...
Building IntervalMap-0.5.2.0...
Building List-0.5.2...
Installed List-0.5.2
Configuring abstract-par-0.3.3...
Building abstract-par-0.3.3...
Configuring ansi-terminal-0.6.2.3...
Installed abstract-par-0.3.3
Building ansi-terminal-0.6.2.3...
Configuring base16-bytestring-0.1.1.6...
Installed IntervalMap-0.5.2.0
Building base16-bytestring-0.1.1.6...
Configuring base64-bytestring-1.0.0.1...
Installed ansi-terminal-0.6.2.3
Building base64-bytestring-1.0.0.1...
Configuring byteable-0.1.1...
Installed base16-bytestring-0.1.1.6
Building byteable-0.1.1...
Configuring base-compat-0.9.1...
Installed byteable-0.1.1
Configuring bytestring-lexing-0.5.0.2...
Installed base64-bytestring-1.0.0.1
Building base-compat-0.9.1...
Building bytestring-lexing-0.5.0.2...
Configuring cereal-0.5.4.0...
Installed base-compat-0.9.1
Building cereal-0.5.4.0...
Configuring colour-2.3.3...
Installed bytestring-lexing-0.5.0.2
Building colour-2.3.3...
Configuring cmdargs-0.10.14...
Installed cereal-0.5.4.0
Building cmdargs-0.10.14...
Configuring data-default-class-0.1.2.0...
Installed colour-2.3.3
Building data-default-class-0.1.2.0...
Configuring erf-2.0.0.0...
Installed data-default-class-0.1.2.0
Building erf-2.0.0.0...
Configuring dlist-0.8.0.2...
Installed erf-2.0.0.0
Building dlist-0.8.0.2...
Configuring hourglass-0.2.10...
Installed dlist-0.8.0.2
Building hourglass-0.2.10...
Configuring mtl-2.2.1...
Installed hourglass-0.2.10
Building mtl-2.2.1...
Configuring network-2.6.3.1...
Installed cmdargs-0.10.14
Configuring memory-0.13...
Installed mtl-2.2.1
Building memory-0.13...
Building network-2.6.3.1...
Configuring parallel-3.2.1.0...
Installed memory-0.13
Building parallel-3.2.1.0...
Configuring primitive-0.6.1.0...
Installed network-2.6.3.1
Building primitive-0.6.1.0...
Configuring old-locale-1.0.0.7...
Installed parallel-3.2.1.0
Building old-locale-1.0.0.7...
Configuring random-1.1...
Installed old-locale-1.0.0.7
Building random-1.1...
Configuring semigroups-0.18.2...
Installed primitive-0.6.1.0
Building semigroups-0.18.2...
Configuring split-0.2.3.1...
Installed semigroups-0.18.2
Configuring stm-2.4.4.1...
Installed random-1.1
Building split-0.2.3.1...
Building stm-2.4.4.1...
Configuring time-locale-compat-0.1.1.3...
Installed split-0.2.3.1
Building time-locale-compat-0.1.1.3...
Configuring transformers-compat-0.5.1.4...
Installed stm-2.4.4.1
Configuring text-1.2.2.1...
Installed time-locale-compat-0.1.1.3
Building transformers-compat-0.5.1.4...
Building text-1.2.2.1...
Configuring utf8-string-1.0.1.1...
Installed transformers-compat-0.5.1.4
Building utf8-string-1.0.1.1...
Configuring word8-0.1.2...
Installed utf8-string-1.0.1.1
Building word8-0.1.2...
Configuring unix-compat-0.4.2.0...
Installed word8-0.1.2
Building unix-compat-0.4.2.0...
Configuring zlib-0.6.1.2...
Installed unix-compat-0.4.2.0
Building zlib-0.6.1.2...
Installed text-1.2.2.1
Configuring ansi-wl-pprint-0.6.7.3...
Installed zlib-0.6.1.2
Configuring palette-0.1.0.4...
Building ansi-wl-pprint-0.6.7.3...
Building palette-0.1.0.4...
Configuring pem-0.2.2...
Installed ansi-wl-pprint-0.6.7.3
Building pem-0.2.2...
Configuring asn1-types-0.3.2...
Installed pem-0.2.2
Configuring cryptonite-0.20...
Installed palette-0.1.0.4
Building asn1-types-0.3.2...
Building cryptonite-0.20...
Configuring socks-0.5.5...
Installed asn1-types-0.3.2
Building socks-0.5.5...
Configuring vector-0.11.0.0...
Installed socks-0.5.5
Building vector-0.11.0.0...
Configuring abstract-deque-0.3...
Installed vector-0.11.0.0
Building abstract-deque-0.3...
Configuring monad-par-extras-0.3.3...
Installed cryptonite-0.20
Building monad-par-extras-0.3.3...
Configuring async-2.1.1...
Installed abstract-deque-0.3
Building async-2.1.1...
Configuring exceptions-0.8.3...
Installed monad-par-extras-0.3.3
Building exceptions-0.8.3...
Configuring mmorph-1.0.9...
Installed async-2.1.1
Building mmorph-1.0.9...
Configuring tagged-0.8.5...
Installed exceptions-0.8.3
Configuring transformers-base-0.4.4...
Installed mmorph-1.0.9
Building tagged-0.8.5...
Building transformers-base-0.4.4...
Configuring blaze-builder-0.4.0.2...
Installed transformers-base-0.4.4
Building blaze-builder-0.4.0.2...
Configuring double-conversion-2.0.1.0...
Installed tagged-0.8.5
Building double-conversion-2.0.1.0...
Configuring hashable-1.2.4.0...
Installed blaze-builder-0.4.0.2
Building hashable-1.2.4.0...
Configuring hexpat-0.20.9...
Installed double-conversion-2.0.1.0
Building hexpat-0.20.9...
Configuring mime-types-0.1.0.7...
Installed hashable-1.2.4.0
Building mime-types-0.1.0.7...
Configuring parsec-3.1.11...
Installed mime-types-0.1.0.7
Building parsec-3.1.11...
Configuring system-filepath-0.4.13.4...
Installed hexpat-0.20.9
Building system-filepath-0.4.13.4...
Installed parsec-3.1.11
Configuring asn1-encoding-0.9.4...
Building asn1-encoding-0.9.4...
Configuring optparse-applicative-0.13.0.0...
Installed system-filepath-0.4.13.4
Building optparse-applicative-0.13.0.0...
Configuring chunked-data-0.3.0...
Installed asn1-encoding-0.9.4
Building chunked-data-0.3.0...
Configuring matrices-0.4.3...
Installed chunked-data-0.3.0
Building matrices-0.4.3...
Configuring mwc-random-0.13.4.0...
Installed optparse-applicative-0.13.0.0
Building mwc-random-0.13.4.0...
Configuring vector-algorithms-0.7.0.1...
Installed matrices-0.4.3
Building vector-algorithms-0.7.0.1...
Configuring vector-binary-instances-0.2.3.3...
Installed mwc-random-0.13.4.0
Building vector-binary-instances-0.2.3.3...
Configuring vector-th-unbox-0.2.1.6...
Installed vector-binary-instances-0.2.3.3
Building vector-th-unbox-0.2.1.6...
Configuring monad-control-1.0.1.0...
Installed vector-th-unbox-0.2.1.6
Building monad-control-1.0.1.0...
Configuring cookie-0.4.2.1...
Installed vector-algorithms-0.7.0.1
Building cookie-0.4.2.1...
Configuring streaming-commons-0.1.16...
Installed monad-control-1.0.1.0
Building streaming-commons-0.1.16...
Configuring case-insensitive-1.2.0.7...
Installed cookie-0.4.2.1
Building case-insensitive-1.2.0.7...
Configuring constraints-0.8...
Installed case-insensitive-1.2.0.7
Building constraints-0.8...
Configuring scientific-0.3.4.9...
Installed streaming-commons-0.1.16
Building scientific-0.3.4.9...
Configuring unordered-containers-0.2.7.1...
Installed constraints-0.8
Building unordered-containers-0.2.7.1...
Configuring void-0.7.1...
Installed scientific-0.3.4.9
Building void-0.7.1...
Configuring network-uri-2.6.1.0...
Installed void-0.7.1
Building network-uri-2.6.1.0...
Installed network-uri-2.6.1.0
Configuring stringable-0.1.3...
Building stringable-0.1.3...
Configuring asn1-parse-0.9.4...
Installed unordered-containers-0.2.7.1
Building asn1-parse-0.9.4...
Configuring monad-par-0.3.4.8...
Installed stringable-0.1.3
Configuring system-fileio-0.3.16.3...
Installed asn1-parse-0.9.4
Building monad-par-0.3.4.8...
Building system-fileio-0.3.16.3...
Configuring lifted-base-0.2.3.8...
Installed system-fileio-0.3.16.3
Building lifted-base-0.2.3.8...
Configuring math-functions-0.2.0.2...
Installed monad-par-0.3.4.8
Building math-functions-0.2.0.2...
Configuring http-types-0.9.1...
Installed lifted-base-0.2.3.8
Building http-types-0.9.1...
Configuring attoparsec-0.13.1.0...
Installed http-types-0.9.1
Building attoparsec-0.13.1.0...
Installed math-functions-0.2.0.2
Configuring clustering-0.3.1...
Building clustering-0.3.1...
Configuring biocore-0.3.1...
Installed attoparsec-0.13.1.0
Building biocore-0.3.1...
Configuring x509-1.6.4...
Installed biocore-0.3.1
Building x509-1.6.4...
Configuring enclosed-exceptions-1.0.2...
Installed clustering-0.3.1
Building enclosed-exceptions-1.0.2...
Configuring mono-traversable-1.0.1...
Installed enclosed-exceptions-1.0.2
Building mono-traversable-1.0.1...
Configuring lifted-async-0.9.0...
Installed x509-1.6.4
Building lifted-async-0.9.0...
Configuring resourcet-1.1.8.1...
Installed lifted-async-0.9.0
Building resourcet-1.1.8.1...
Configuring http-client-0.5.4...
Installed resourcet-1.1.8.1
Building http-client-0.5.4...
Installed mono-traversable-1.0.1
Configuring seqloc-0.6.1.1...
Building seqloc-0.6.1.1...
Configuring aeson-1.0.2.1...
Installed seqloc-0.6.1.1
Building aeson-1.0.2.1...
Configuring x509-store-1.6.2...
Installed http-client-0.5.4
Building x509-store-1.6.2...
Configuring shelly-1.6.8.1...
Installed x509-store-1.6.2
Building shelly-1.6.8.1...
Configuring conduit-1.2.8...
Failed to install shelly-1.6.8.1
Build log ( /home/builder/.cabal/logs/shelly-1.6.8.1.log ):
cabal: Entering directory '/tmp/cabal-tmp-1741/shelly-1.6.8.1'
Configuring shelly-1.6.8.1...
Building shelly-1.6.8.1...
Preprocessing library shelly-1.6.8.1...
[1 of 6] Compiling Shelly.Base      ( src/Shelly/Base.hs, dist/build/Shelly/Base.o )

src/Shelly/Base.hs:39:1: warning: [-Wunused-imports]
    The import of ‘ProcessHandle’
    from module ‘System.Process’ is redundant

src/Shelly/Base.hs:42:1: warning: [-Wunused-imports]
    The import of ‘liftM’ from module ‘Control.Monad’ is redundant
[2 of 6] Compiling Shelly.Find      ( src/Shelly/Find.hs, dist/build/Shelly/Find.o )

src/Shelly/Find.hs:67:5: warning: [-Wname-shadowing]
    This binding for ‘traverse’ shadows the existing binding
      imported from ‘Prelude’ at src/Shelly/Find.hs:11:1-32
      (and originally defined in ‘Data.Traversable’)
[3 of 6] Compiling Shelly           ( src/Shelly.hs, dist/build/Shelly.o )

src/Shelly.hs:129:1: warning: [-Wunused-imports]
    The import of ‘Monoid’ from module ‘Data.Monoid’ is redundant

src/Shelly.hs:321:13: warning: [-Wunused-matches]
    Defined but not used: ‘fp’

src/Shelly.hs:376:5: warning: [-Wincomplete-patterns]
    Pattern match(es) are non-exhaustive
    In an equation for ‘toHandle’:
        Patterns not matched: (Just NoStream)
[4 of 6] Compiling Shelly.Lifted    ( src/Shelly/Lifted.hs, dist/build/Shelly/Lifted.o )

src/Shelly/Lifted.hs:104:1: warning: [-Wunused-imports]
    The import of ‘Data.Monoid’ is redundant
      except perhaps to import instances from ‘Data.Monoid’
    To import instances alone, use: import Data.Monoid()

src/Shelly/Lifted.hs:117:1: warning: [-Wdeprecations]
    Module ‘Control.Monad.Trans.Error’ is deprecated:
      Use Control.Monad.Trans.Except instead

src/Shelly/Lifted.hs:142:11: warning: [-Wdeprecations]
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

src/Shelly/Lifted.hs:142:43: warning: [-Wdeprecations]
    In the use of type constructor or class ‘ErrorT’
    (imported from Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

src/Shelly/Lifted.hs:143:16: warning: [-Wdeprecations]
    In the use of data constructor ‘ErrorT’
    (imported from Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

src/Shelly/Lifted.hs:242:29: warning: [-Wdeprecations]
    In the use of type constructor or class ‘Error’
    (imported from Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

src/Shelly/Lifted.hs:243:29: warning: [-Wdeprecations]
    In the use of type constructor or class ‘ErrorT’
    (imported from Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

src/Shelly/Lifted.hs:244:18: warning: [-Wdeprecations]
    In the use of type constructor or class ‘ErrorT’
    (imported from Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

src/Shelly/Lifted.hs:246:9: warning: [-Wdeprecations]
    In the use of data constructor ‘ErrorT’
    (imported from Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

src/Shelly/Lifted.hs:247:41: warning: [-Wdeprecations]
    In the use of ‘runErrorT’
    (imported from Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"

src/Shelly/Lifted.hs:248:31: warning: [-Wdeprecations]
    In the use of data constructor ‘ErrorT’
    (imported from Control.Monad.Trans.Error):
    Deprecated: "Use Control.Monad.Trans.Except instead"
[5 of 6] Compiling Shelly.Pipe      ( src/Shelly/Pipe.hs, dist/build/Shelly/Pipe.o )

src/Shelly/Pipe.hs:122:1: error:
    • The default type ‘Text’ is not an instance of ‘Num’
    • When checking the types in a default declaration
cabal: Leaving directory '/tmp/cabal-tmp-1741/shelly-1.6.8.1'
Building conduit-1.2.8...
Installed conduit-1.2.8
Configuring x509-system-1.6.4...
Building x509-system-1.6.4...
Configuring x509-validation-1.6.5...
Installed x509-system-1.6.4
Building x509-validation-1.6.5...
Configuring samtools-0.2.4.3...
Installed aeson-1.0.2.1
Building samtools-0.2.4.3...
Configuring conduit-extra-1.1.15...
Installed x509-validation-1.6.5
Building conduit-extra-1.1.15...
Installed conduit-extra-1.1.15
Configuring aeson-pretty-0.8.2...
Building aeson-pretty-0.8.2...
Configuring statistics-0.13.3.0...
Installed samtools-0.2.4.3
Building statistics-0.13.3.0...
Configuring conduit-combinators-1.0.8.2...
Installed aeson-pretty-0.8.2
Building conduit-combinators-1.0.8.2...
Configuring tls-1.3.8...
Installed conduit-combinators-1.0.8.2
Building tls-1.3.8...
Installed statistics-0.13.3.0
Installed tls-1.3.8
Configuring connection-0.2.6...
Building connection-0.2.6...
Installed connection-0.2.6
Configuring http-client-tls-0.3.3...
Building http-client-tls-0.3.3...
Installed http-client-tls-0.3.3
Configuring http-conduit-2.2.3...
Building http-conduit-2.2.3...
Installed http-conduit-2.2.3
cabal: Error: some packages failed to install:
bioinformatics-toolkit-0.2.1 depends on shelly-1.6.8.1 which failed to
install.
shelly-1.6.8.1 failed during the building phase. The exception was:
ExitFailure 1