Contents
Index
biosff-0.3.7.1: Library and executables for working with SFF files
Index
avg
Bio.Sequence.SFF_filters
bases
Bio.Sequence.SFF
baseToFlowPos
Bio.Sequence.SFF
clipFlows
Bio.Sequence.SFF_filters
clipSeq
Bio.Sequence.SFF_filters
clip_adapter_left
Bio.Sequence.SFF
clip_adapter_right
Bio.Sequence.SFF
clip_qual_left
Bio.Sequence.SFF
clip_qual_right
Bio.Sequence.SFF
CommonHeader
1 (Type/Class)
Bio.Sequence.SFF
2 (Data Constructor)
Bio.Sequence.SFF
convert
Bio.Sequence.SFF
cumulative_index
Bio.Sequence.SFF
date
Bio.Sequence.SFF
decodeReadName
Bio.Sequence.SFF
DiscardFilter
Bio.Sequence.SFF_filters
discard_dots
Bio.Sequence.SFF_filters
discard_empty
Bio.Sequence.SFF_filters
discard_key
Bio.Sequence.SFF_filters
discard_length
Bio.Sequence.SFF_filters
discard_mixed
Bio.Sequence.SFF_filters
dlength
Bio.Sequence.SFF_filters
encodeReadName
Bio.Sequence.SFF
find_primer
Bio.Sequence.SFF_filters
Flow
Bio.Sequence.SFF
flow
Bio.Sequence.SFF
flowgram
Bio.Sequence.SFF
flowgram_fmt
Bio.Sequence.SFF
flowToBasePos
Bio.Sequence.SFF
flow_data
Bio.Sequence.SFF
flow_index
Bio.Sequence.SFF
flow_length
Bio.Sequence.SFF
flx_linker
Bio.Sequence.SFF_filters
getRB
Bio.Sequence.SFF
Index
Bio.Sequence.SFF
index_length
Bio.Sequence.SFF
index_offset
Bio.Sequence.SFF
key
Bio.Sequence.SFF
key_length
Bio.Sequence.SFF
masked_bases
Bio.Sequence.SFF
name_length
Bio.Sequence.SFF
num_bases
Bio.Sequence.SFF
num_reads
Bio.Sequence.SFF
packFlows
Bio.Sequence.SFF
putRB
Bio.Sequence.SFF
Qual
Bio.Sequence.SFF
qual20
Bio.Sequence.SFF_filters
QualData
Bio.Sequence.SFF
quality
Bio.Sequence.SFF
rapid_adapter
Bio.Sequence.SFF_filters
ReadBlock
1 (Type/Class)
Bio.Sequence.SFF
2 (Data Constructor)
Bio.Sequence.SFF
ReadHeader
1 (Type/Class)
Bio.Sequence.SFF
2 (Data Constructor)
Bio.Sequence.SFF
ReadName
1 (Type/Class)
Bio.Sequence.SFF
2 (Data Constructor)
Bio.Sequence.SFF
readSFF
Bio.Sequence.SFF
read_header
Bio.Sequence.SFF
read_name
Bio.Sequence.SFF
recoverSFF
Bio.Sequence.SFF
region
Bio.Sequence.SFF
rna_adapter
Bio.Sequence.SFF_filters
rna_adapter2
Bio.Sequence.SFF_filters
rna_adapter3
Bio.Sequence.SFF_filters
SeqData
Bio.Sequence.SFF
SFF
1 (Type/Class)
Bio.Sequence.SFF
2 (Data Constructor)
Bio.Sequence.SFF
sigint
Bio.Sequence.SFF_filters
test
Bio.Sequence.SFF
time
Bio.Sequence.SFF
ti_adapter_b
Bio.Sequence.SFF_filters
ti_linker
Bio.Sequence.SFF_filters
trim
Bio.Sequence.SFF
trimAdapter
Bio.Sequence.SFF
TrimFilter
Bio.Sequence.SFF_filters
trimFlows
Bio.Sequence.SFF
trimFromTo
Bio.Sequence.SFF
trimKey
Bio.Sequence.SFF
trim_primer
Bio.Sequence.SFF_filters
trim_qual20
Bio.Sequence.SFF_filters
trim_sigint
Bio.Sequence.SFF_filters
unpackFlows
Bio.Sequence.SFF
writeSFF
Bio.Sequence.SFF
writeSFF'
Bio.Sequence.SFF
x_loc
Bio.Sequence.SFF
y_loc
Bio.Sequence.SFF