Safe Haskell	None
Language	Haskell2010

Types

Documentation

newtype AA Source #

Constructors

AA
Fields unAA :: Char

Instances

Eq AA Source #
Methods (==) :: AA -> AA -> Bool # (/=) :: AA -> AA -> Bool #
Ord AA Source #
Methods compare :: AA -> AA -> Ordering # (<) :: AA -> AA -> Bool # (<=) :: AA -> AA -> Bool # (>) :: AA -> AA -> Bool # (>=) :: AA -> AA -> Bool # max :: AA -> AA -> AA # min :: AA -> AA -> AA #
Read AA Source #
Methods readsPrec :: Int -> ReadS AA # readList :: ReadS [AA] # readPrec :: ReadPrec AA # readListPrec :: ReadPrec [AA] #
Show AA Source #
Methods showsPrec :: Int -> AA -> ShowS # show :: AA -> String # showList :: [AA] -> ShowS #

newtype Nuc Source #

Constructors

Nuc Char

Instances

Eq Nuc Source #
Methods (==) :: Nuc -> Nuc -> Bool # (/=) :: Nuc -> Nuc -> Bool #
Ord Nuc Source #
Methods compare :: Nuc -> Nuc -> Ordering # (<) :: Nuc -> Nuc -> Bool # (<=) :: Nuc -> Nuc -> Bool # (>) :: Nuc -> Nuc -> Bool # (>=) :: Nuc -> Nuc -> Bool # max :: Nuc -> Nuc -> Nuc # min :: Nuc -> Nuc -> Nuc #
Read Nuc Source #
Methods readsPrec :: Int -> ReadS Nuc # readList :: ReadS [Nuc] # readPrec :: ReadPrec Nuc # readListPrec :: ReadPrec [Nuc] #
Show Nuc Source #
Methods showsPrec :: Int -> Nuc -> ShowS # show :: Nuc -> String # showList :: [Nuc] -> ShowS #

newtype Field Source #

Constructors

Field Int

Instances

Eq Field Source #
Methods (==) :: Field -> Field -> Bool # (/=) :: Field -> Field -> Bool #

newtype Frequency Source #

Constructors

Frequency Double

Instances

Enum Frequency Source #
Methods succ :: Frequency -> Frequency # pred :: Frequency -> Frequency # toEnum :: Int -> Frequency # fromEnum :: Frequency -> Int # enumFrom :: Frequency -> [Frequency] # enumFromThen :: Frequency -> Frequency -> [Frequency] # enumFromTo :: Frequency -> Frequency -> [Frequency] # enumFromThenTo :: Frequency -> Frequency -> Frequency -> [Frequency] #
Eq Frequency Source #
Methods (==) :: Frequency -> Frequency -> Bool # (/=) :: Frequency -> Frequency -> Bool #
Fractional Frequency Source #
Methods (/) :: Frequency -> Frequency -> Frequency # recip :: Frequency -> Frequency # fromRational :: Rational -> Frequency #
Num Frequency Source #
Methods (+) :: Frequency -> Frequency -> Frequency # (-) :: Frequency -> Frequency -> Frequency # (*) :: Frequency -> Frequency -> Frequency # negate :: Frequency -> Frequency # abs :: Frequency -> Frequency # signum :: Frequency -> Frequency # fromInteger :: Integer -> Frequency #
Ord Frequency Source #
Methods compare :: Frequency -> Frequency -> Ordering # (<) :: Frequency -> Frequency -> Bool # (<=) :: Frequency -> Frequency -> Bool # (>) :: Frequency -> Frequency -> Bool # (>=) :: Frequency -> Frequency -> Bool # max :: Frequency -> Frequency -> Frequency # min :: Frequency -> Frequency -> Frequency #
Read Frequency Source #
Methods readsPrec :: Int -> ReadS Frequency # readList :: ReadS [Frequency] # readPrec :: ReadPrec Frequency # readListPrec :: ReadPrec [Frequency] #
Show Frequency Source #
Methods showsPrec :: Int -> Frequency -> ShowS # show :: Frequency -> String # showList :: [Frequency] -> ShowS #

newtype Position Source #

Constructors

Position Int

Instances

Enum Position Source #
Methods succ :: Position -> Position # pred :: Position -> Position # toEnum :: Int -> Position # fromEnum :: Position -> Int # enumFrom :: Position -> [Position] # enumFromThen :: Position -> Position -> [Position] # enumFromTo :: Position -> Position -> [Position] # enumFromThenTo :: Position -> Position -> Position -> [Position] #
Eq Position Source #
Methods (==) :: Position -> Position -> Bool # (/=) :: Position -> Position -> Bool #
Num Position Source #
Methods (+) :: Position -> Position -> Position # (-) :: Position -> Position -> Position # (*) :: Position -> Position -> Position # negate :: Position -> Position # abs :: Position -> Position # signum :: Position -> Position # fromInteger :: Integer -> Position #
Ord Position Source #
Methods compare :: Position -> Position -> Ordering # (<) :: Position -> Position -> Bool # (<=) :: Position -> Position -> Bool # (>) :: Position -> Position -> Bool # (>=) :: Position -> Position -> Bool # max :: Position -> Position -> Position # min :: Position -> Position -> Position #
Read Position Source #
Methods readsPrec :: Int -> ReadS Position # readList :: ReadS [Position] # readPrec :: ReadPrec Position # readListPrec :: ReadPrec [Position] #
Show Position Source #
Methods showsPrec :: Int -> Position -> ShowS # show :: Position -> String # showList :: [Position] -> ShowS #

newtype Identity Source #

Constructors

Identity Double

Instances

Eq Identity Source #
Methods (==) :: Identity -> Identity -> Bool # (/=) :: Identity -> Identity -> Bool #
Num Identity Source #
Methods (+) :: Identity -> Identity -> Identity # (-) :: Identity -> Identity -> Identity # (*) :: Identity -> Identity -> Identity # negate :: Identity -> Identity # abs :: Identity -> Identity # signum :: Identity -> Identity # fromInteger :: Integer -> Identity #
Ord Identity Source #
Methods compare :: Identity -> Identity -> Ordering # (<) :: Identity -> Identity -> Bool # (<=) :: Identity -> Identity -> Bool # (>) :: Identity -> Identity -> Bool # (>=) :: Identity -> Identity -> Bool # max :: Identity -> Identity -> Identity # min :: Identity -> Identity -> Identity #
Read Identity Source #
Methods readsPrec :: Int -> ReadS Identity # readList :: ReadS [Identity] # readPrec :: ReadPrec Identity # readListPrec :: ReadPrec [Identity] #
Show Identity Source #
Methods showsPrec :: Int -> Identity -> ShowS # show :: Identity -> String # showList :: [Identity] -> ShowS #

newtype BlosumVal Source #

Constructors

BlosumVal
Fields unBlosumVal :: Int

Instances

Enum BlosumVal Source #
Methods succ :: BlosumVal -> BlosumVal # pred :: BlosumVal -> BlosumVal # toEnum :: Int -> BlosumVal # fromEnum :: BlosumVal -> Int # enumFrom :: BlosumVal -> [BlosumVal] # enumFromThen :: BlosumVal -> BlosumVal -> [BlosumVal] # enumFromTo :: BlosumVal -> BlosumVal -> [BlosumVal] # enumFromThenTo :: BlosumVal -> BlosumVal -> BlosumVal -> [BlosumVal] #
Eq BlosumVal Source #
Methods (==) :: BlosumVal -> BlosumVal -> Bool # (/=) :: BlosumVal -> BlosumVal -> Bool #
Num BlosumVal Source #
Methods (+) :: BlosumVal -> BlosumVal -> BlosumVal # (-) :: BlosumVal -> BlosumVal -> BlosumVal # (*) :: BlosumVal -> BlosumVal -> BlosumVal # negate :: BlosumVal -> BlosumVal # abs :: BlosumVal -> BlosumVal # signum :: BlosumVal -> BlosumVal # fromInteger :: Integer -> BlosumVal #
Ord BlosumVal Source #
Methods compare :: BlosumVal -> BlosumVal -> Ordering # (<) :: BlosumVal -> BlosumVal -> Bool # (<=) :: BlosumVal -> BlosumVal -> Bool # (>) :: BlosumVal -> BlosumVal -> Bool # (>=) :: BlosumVal -> BlosumVal -> Bool # max :: BlosumVal -> BlosumVal -> BlosumVal # min :: BlosumVal -> BlosumVal -> BlosumVal #
Read BlosumVal Source #
Methods readsPrec :: Int -> ReadS BlosumVal # readList :: ReadS [BlosumVal] # readPrec :: ReadPrec BlosumVal # readListPrec :: ReadPrec [BlosumVal] #
Show BlosumVal Source #
Methods showsPrec :: Int -> BlosumVal -> ShowS # show :: BlosumVal -> String # showList :: [BlosumVal] -> ShowS #

newtype ClusterMap Source #

Constructors

ClusterMap
Fields unClusterMap :: Map Int (Seq FastaSequence)

Instances

Eq ClusterMap Source #
Methods (==) :: ClusterMap -> ClusterMap -> Bool # (/=) :: ClusterMap -> ClusterMap -> Bool #
Ord ClusterMap Source #
Methods compare :: ClusterMap -> ClusterMap -> Ordering # (<) :: ClusterMap -> ClusterMap -> Bool # (<=) :: ClusterMap -> ClusterMap -> Bool # (>) :: ClusterMap -> ClusterMap -> Bool # (>=) :: ClusterMap -> ClusterMap -> Bool # max :: ClusterMap -> ClusterMap -> ClusterMap # min :: ClusterMap -> ClusterMap -> ClusterMap #
Show ClusterMap Source #
Methods showsPrec :: Int -> ClusterMap -> ShowS # show :: ClusterMap -> String # showList :: [ClusterMap] -> ShowS #

newtype ClusterFrequencyMap Source #

Constructors

ClusterFrequencyMap
Fields unClusterFrequencyMap :: Map Position (Seq (AA, Frequency))

Instances

Eq ClusterFrequencyMap Source #
Methods (==) :: ClusterFrequencyMap -> ClusterFrequencyMap -> Bool # (/=) :: ClusterFrequencyMap -> ClusterFrequencyMap -> Bool #
Ord ClusterFrequencyMap Source #
Methods compare :: ClusterFrequencyMap -> ClusterFrequencyMap -> Ordering # (<) :: ClusterFrequencyMap -> ClusterFrequencyMap -> Bool # (<=) :: ClusterFrequencyMap -> ClusterFrequencyMap -> Bool # (>) :: ClusterFrequencyMap -> ClusterFrequencyMap -> Bool # (>=) :: ClusterFrequencyMap -> ClusterFrequencyMap -> Bool # max :: ClusterFrequencyMap -> ClusterFrequencyMap -> ClusterFrequencyMap # min :: ClusterFrequencyMap -> ClusterFrequencyMap -> ClusterFrequencyMap #
Show ClusterFrequencyMap Source #
Methods showsPrec :: Int -> ClusterFrequencyMap -> ShowS # show :: ClusterFrequencyMap -> String # showList :: [ClusterFrequencyMap] -> ShowS #

newtype AAMap Source #

Constructors

AAMap
Fields unAAMap :: Map AA (Map AA Frequency)

Instances

Eq AAMap Source #
Methods (==) :: AAMap -> AAMap -> Bool # (/=) :: AAMap -> AAMap -> Bool #
Ord AAMap Source #
Methods compare :: AAMap -> AAMap -> Ordering # (<) :: AAMap -> AAMap -> Bool # (<=) :: AAMap -> AAMap -> Bool # (>) :: AAMap -> AAMap -> Bool # (>=) :: AAMap -> AAMap -> Bool # max :: AAMap -> AAMap -> AAMap # min :: AAMap -> AAMap -> AAMap #
Show AAMap Source #
Methods showsPrec :: Int -> AAMap -> ShowS # show :: AAMap -> String # showList :: [AAMap] -> ShowS #
Monoid AAMap Source #
Methods mempty :: AAMap # mappend :: AAMap -> AAMap -> AAMap # mconcat :: [AAMap] -> AAMap #

newtype BlockMap Source #

Constructors

BlockMap
Fields unBlockMap :: AAMap

Instances

Eq BlockMap Source #
Methods (==) :: BlockMap -> BlockMap -> Bool # (/=) :: BlockMap -> BlockMap -> Bool #
Ord BlockMap Source #
Methods compare :: BlockMap -> BlockMap -> Ordering # (<) :: BlockMap -> BlockMap -> Bool # (<=) :: BlockMap -> BlockMap -> Bool # (>) :: BlockMap -> BlockMap -> Bool # (>=) :: BlockMap -> BlockMap -> Bool # max :: BlockMap -> BlockMap -> BlockMap # min :: BlockMap -> BlockMap -> BlockMap #
Show BlockMap Source #
Methods showsPrec :: Int -> BlockMap -> ShowS # show :: BlockMap -> String # showList :: [BlockMap] -> ShowS #

newtype FrequencyMap Source #

Constructors

FrequencyMap
Fields unFrequencyMap :: AAMap

Instances

Eq FrequencyMap Source #
Methods (==) :: FrequencyMap -> FrequencyMap -> Bool # (/=) :: FrequencyMap -> FrequencyMap -> Bool #
Ord FrequencyMap Source #
Methods compare :: FrequencyMap -> FrequencyMap -> Ordering # (<) :: FrequencyMap -> FrequencyMap -> Bool # (<=) :: FrequencyMap -> FrequencyMap -> Bool # (>) :: FrequencyMap -> FrequencyMap -> Bool # (>=) :: FrequencyMap -> FrequencyMap -> Bool # max :: FrequencyMap -> FrequencyMap -> FrequencyMap # min :: FrequencyMap -> FrequencyMap -> FrequencyMap #
Show FrequencyMap Source #
Methods showsPrec :: Int -> FrequencyMap -> ShowS # show :: FrequencyMap -> String # showList :: [FrequencyMap] -> ShowS #

newtype Blosum Source #

Constructors

Blosum
Fields unBlosum :: Map AA (Map AA BlosumVal)

Instances

Eq Blosum Source #
Methods (==) :: Blosum -> Blosum -> Bool # (/=) :: Blosum -> Blosum -> Bool #
Ord Blosum Source #
Methods compare :: Blosum -> Blosum -> Ordering # (<) :: Blosum -> Blosum -> Bool # (<=) :: Blosum -> Blosum -> Bool # (>) :: Blosum -> Blosum -> Bool # (>=) :: Blosum -> Blosum -> Bool # max :: Blosum -> Blosum -> Blosum # min :: Blosum -> Blosum -> Blosum #
Show Blosum Source #
Methods showsPrec :: Int -> Blosum -> ShowS # show :: Blosum -> String # showList :: [Blosum] -> ShowS #