Bio.Molecule

Documentation

newtype Molecule t c

Constructors

Molecule

Fields

• getChains :: [(t, c)]

Instances

(Show t, Show c) => Show (Molecule t c)

Defined in Bio.Molecule

Methods

showsPrec :: Int -> Molecule t c -> ShowS

show :: Molecule t c -> String

showList :: [Molecule t c] -> ShowS

Eq t => MoleculeLike (Molecule t c)

Defined in Bio.Molecule

Methods

empty :: Molecule t c

deleteAt :: Molecule t c -> Index (Molecule t c) -> Molecule t c

create :: Molecule t c -> Index (Molecule t c) -> IxValue (Molecule t c) -> Molecule t c

set :: Molecule t c -> Index (Molecule t c) -> IxValue (Molecule t c) -> Molecule t c

(Eq t, Eq c) => Eq (Molecule t c)

Defined in Bio.Molecule

Methods

(==) :: Molecule t c -> Molecule t c -> Bool

(/=) :: Molecule t c -> Molecule t c -> Bool

Eq t => Ixed (Molecule t c)

Defined in Bio.Molecule

Methods

ix :: Index (Molecule t c) -> Traversal' (Molecule t c) (IxValue (Molecule t c))

type Index (Molecule t c)

Defined in Bio.Molecule

type Index (Molecule t c) = t

type IxValue (Molecule t c)

Defined in Bio.Molecule

type IxValue (Molecule t c) = c

class (Eq (Index m), Ixed m) => MoleculeLike m where

Methods

empty :: m

Create empty molecule without chains

deleteAt :: m -> Index m -> m

Delete chain with specified index (returns error if chain doesn't present)

create :: m -> Index m -> IxValue m -> m

Create chain with specified index (returns error if chain is already present)

set :: m -> Index m -> IxValue m -> m

Set new chain with speficied index (creates new if does not present)

Instances

Eq t => MoleculeLike (Molecule t c)

Defined in Bio.Molecule

Methods

empty :: Molecule t c

deleteAt :: Molecule t c -> Index (Molecule t c) -> Molecule t c

create :: Molecule t c -> Index (Molecule t c) -> IxValue (Molecule t c) -> Molecule t c

set :: Molecule t c -> Index (Molecule t c) -> IxValue (Molecule t c) -> Molecule t c

singleton :: MoleculeLike m => Index m -> IxValue m -> m

Create molecule with single chain