diversity: Return the diversity at each position for all sequences in a fasta file

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Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag.


Change log None available
Dependencies base (>=4.6 && <4.8), containers (>=0.5 && <0.6), diversity, fasta (>= && <0.6), math-functions (>=0.1 && <0.2), optparse-applicative (>=0.10 && <0.12), parsec (>=3.1 && <4.0), split (>=0.2 && <0.3) [details]
License GPL-2.0-only
Author Gregory W. Schwartz
Maintainer gregory.schwartz@drexel.edu
Category Bioinformatics
Home page https://github.com/GregorySchwartz/diversity
Uploaded by GregorySchwartz at 2014-12-09T18:40:03Z




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