elynx-seq-0.0.1: Handle molecular sequences (Index - S)

elynx-seq-0.0.1: Handle molecular sequences

A
B
C
D
E
F
G
H
I
J
K
L
M
N
P
Q
R
S
T
U
V
W
X
Y
Z
All

Index - S

S
1 (Data Constructor)	ELynx.Data.Character.AminoAcidX
2 (Data Constructor)	ELynx.Data.Character.AminoAcidS
3 (Data Constructor)	ELynx.Data.Character.AminoAcidI
4 (Data Constructor)	ELynx.Data.Character.AminoAcid
5 (Data Constructor)	ELynx.Data.Character.NucleotideI
scale
1 (Function)	ELynx.Data.MarkovProcess.SubstitutionModel
2 (Function)	ELynx.Data.MarkovProcess.MixtureModel
Sequence
1 (Type/Class)	ELynx.Data.Sequence.Sequence
2 (Data Constructor)	ELynx.Data.Sequence.Sequence
SequenceCharacters	ELynx.Data.Sequence.Sequence
sequenceListHeader	ELynx.Data.Sequence.Sequence
SequenceName	ELynx.Data.Sequence.Sequence
sequencesToFasta	ELynx.Export.Sequence.Fasta
sequenceToFasta	ELynx.Export.Sequence.Fasta
setDiagonal	ELynx.Data.MarkovProcess.RateMatrix
setPopulationSize	ELynx.Data.Character.BoundaryMutation
showCounts	ELynx.Data.Character.BoundaryMutation
showMSA	ELynx.Data.Sequence.MultiSequenceAlignment
showSequence	ELynx.Data.Sequence.Sequence
showSequenceList	ELynx.Data.Sequence.Sequence
simulateAndFlattenNSitesAlongTree	ELynx.Simulate.MarkovProcessAlongTree
simulateAndFlattenNSitesAlongTreeMixtureModel	ELynx.Simulate.MarkovProcessAlongTree
simulateNSitesAlongTree	ELynx.Simulate.MarkovProcessAlongTree
simulateNSitesAlongTreeMixtureModel	ELynx.Simulate.MarkovProcessAlongTree
Standard	ELynx.Data.Character.Codon
State
1 (Type/Class)	ELynx.Data.Character.BoundaryMutation
2 (Type/Class)	ELynx.Simulate.MarkovProcess
stateSpace	ELynx.Data.Character.BoundaryMutation
stateSpaceSize	ELynx.Data.Character.BoundaryMutation
StationaryDistribution	ELynx.Data.MarkovProcess.RateMatrix
stationaryDistribution	ELynx.Data.MarkovProcess.SubstitutionModel
std	ELynx.Data.Alphabet.Alphabet
Stop
1 (Data Constructor)	ELynx.Data.Character.AminoAcidS
2 (Data Constructor)	ELynx.Data.Character.AminoAcidI
subSample	ELynx.Data.Sequence.MultiSequenceAlignment
SubstitutionModel
1 (Type/Class)	ELynx.Data.MarkovProcess.SubstitutionModel
2 (Data Constructor)	ELynx.Data.MarkovProcess.PhyloModel
substitutionModel	ELynx.Data.MarkovProcess.SubstitutionModel
summarize
1 (Function)	ELynx.Data.MarkovProcess.SubstitutionModel
2 (Function)	ELynx.Data.MarkovProcess.MixtureModel
3 (Function)	ELynx.Data.MarkovProcess.PhyloModel
summarizeComponent	ELynx.Data.MarkovProcess.MixtureModel
summarizeGammaRateHeterogeneity	ELynx.Data.MarkovProcess.GammaRateHeterogeneity
summarizeMSA	ELynx.Data.Sequence.MultiSequenceAlignment
summarizeSequence	ELynx.Data.Sequence.Sequence
summarizeSequenceList	ELynx.Data.Sequence.Sequence
summarizeSequenceListBody	ELynx.Data.Sequence.Sequence