| Copyright | 2021 Dominik Schrempf |
|---|---|
| License | GPL-3.0-or-later |
| Maintainer | dominik.schrempf@gmail.com |
| Stability | unstable |
| Portability | portable |
| Safe Haskell | Safe-Inferred |
| Language | Haskell2010 |
ELynx.Character.AminoAcidI
Description
Creation date: Thu Oct 4 18:26:35 2018.
See header of Alphabet.
Amino acid IUPAC code. See also https://www.bioinformatics.org/sms/iupac.html or https://en.wikipedia.org/wiki/International_Union_of_Pure_and_Applied_Chemistry.
Remarks:
- Question marks (
?) are interpreted as unknowns (same asX). However, when a sequence is printed/exported,Xs will be used. - Full stops (
.) are interpreted as gaps (same as-). However, when a sequence is printed/exported,-s will be used
Amino Acid Code: Three letter Code: Amino Acid: ---------------- ------------------ ----------- A Ala Alanine C Cys Cysteine D Asp Aspartic Acid E Glu Glutamic Acid F Phe Phenylalanine G Gly Glycine H His Histidine I Ile Isoleucine K Lys Lysine L Leu Leucine M Met Methionine N Asn Asparagine P Pro Proline Q Gln Glutamine R Arg Arginine S Ser Serine T Thr Threonine V Val Valine W Trp Tryptophan Y Tyr Tyrosine ---------------- ------------------ ----------- J Leucine or Isoleucine B Asx Aspartic acid or Asparagine Z Glx Glutamine or Glutamic acid ---------------- ------------------ ----------- X Xaa Any amino acid (preferred; used for printing) ? Xaa Any amino acid ---------------- ------------------ ----------- * Stp No amino acid ---------------- ------------------ ----------- - Gap No amino acid (preferred; used for printing) . Gap No amino acid
Documentation
data AminoAcidI Source #
Amino acids.