The flowsim package

[Tags:gpl, program]

Provides clonesim, a clone simulator that simulates shotgun genomic clones, and flowsim, that takes the output from clonesim (or any other Fasta-formatted file) and generates simulated reads from them mimicing Roche's 454 pyrosequencing technology, writing output in 454's native SFF format. The flowgram generation is based on empirical distributions derived from real data (although analytic distributions are available too, if you prefer).

The Darcs repository is at http://malde.org/~ketil/biohaskell/flowsim.

Properties

Versions 0.2.6, 0.2.7, 0.2.8, 0.3, 0.3.3, 0.3.4, 0.3.5
Dependencies array (>=0.1), base (==4.*), bio (>=0.4.9), bytestring, cmdargs (>=0.5), containers, directory, MonadRandom, random [details]
License GPL
Author Ketil Malde
Maintainer Ketil Malde <ketil@malde.org>
Stability Unknown
Category Bioinformatics
Home page http://biohaskell.org/Applications/FlowSim
Uploaded Sun Feb 27 10:10:43 UTC 2011 by KetilMalde
Distributions NixOS:0.3.5
Downloads 1609 total (20 in the last 30 days)
Votes
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Status Docs not available [build log]
Successful builds reported [all 5 reports]

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