The flowsim package

[Tags: gpl, program]

Provides clonesim, a clone simulator that simulates shotgun genomic clones, and flowsim, that takes the output from clonesim (or any other Fasta-formatted file) and generates simulated reads from them mimicing Roche's 454 pyrosequencing technology, writing output in 454's native SFF format. The flowgram generation is based on empirical distributions derived from real data (although analytic distributions are available too, if you prefer).

The Darcs repository is at http://malde.org/~ketil/biohaskell/flowsim.


Properties

Versions0.2.6, 0.2.7, 0.2.8, 0.3, 0.3.3, 0.3.4, 0.3.5
Dependenciesarray (>=0.1), base (==4.*), biocore (>=0.3), biofasta, biosff (>=0.3), bytestring, cmdargs (>=0.5), containers, directory, MonadRandom, mtl (>=2), random
LicenseGPL-2
AuthorKetil Malde
MaintainerKetil Malde <ketil@malde.org>
CategoryBioinformatics
Home pagehttp://biohaskell.org/Applications/FlowSim
Executablesfiltersff, gelfilter, duplicator, mutator, kitsim, clonesim, hplc, flowsim
Upload dateTue Nov 19 15:49:01 UTC 2013
Uploaded byKetilMalde
Downloads678 total (58 in last 30 days)

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