Network.Google.Genomics.Types

Service Configuration

genomicsService :: ServiceConfig

Default request referring to version v1 of the Genomics API. This contains the host and root path used as a starting point for constructing service requests.

OAuth Scopes

genomicsScope :: Proxy '["https://www.googleapis.com/auth/genomics"]

View and manage Genomics data

cloudPlatformScope :: Proxy '["https://www.googleapis.com/auth/cloud-platform"]

View and manage your data across Google Cloud Platform services

genomicsReadOnlyScope :: Proxy '["https://www.googleapis.com/auth/genomics.readonly"]

View Genomics data

storageReadWriteScope :: Proxy '["https://www.googleapis.com/auth/devstorage.read_write"]

Manage your data in Google Cloud Storage

bigQueryScope :: Proxy '["https://www.googleapis.com/auth/bigquery"]

View and manage your data in Google BigQuery

ImportVariantsRequestInfoMergeConfig

data ImportVariantsRequestInfoMergeConfig

A mapping between info field keys and the InfoMergeOperations to be performed on them. This is plumbed down to the MergeVariantRequests generated by the resulting import job.

See: importVariantsRequestInfoMergeConfig smart constructor.

Instances

Eq ImportVariantsRequestInfoMergeConfig

Methods

(==) :: ImportVariantsRequestInfoMergeConfig -> ImportVariantsRequestInfoMergeConfig -> Bool

(/=) :: ImportVariantsRequestInfoMergeConfig -> ImportVariantsRequestInfoMergeConfig -> Bool

Data ImportVariantsRequestInfoMergeConfig

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportVariantsRequestInfoMergeConfig -> c ImportVariantsRequestInfoMergeConfig

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportVariantsRequestInfoMergeConfig

toConstr :: ImportVariantsRequestInfoMergeConfig -> Constr

dataTypeOf :: ImportVariantsRequestInfoMergeConfig -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ImportVariantsRequestInfoMergeConfig)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportVariantsRequestInfoMergeConfig)

gmapT :: (forall b. Data b => b -> b) -> ImportVariantsRequestInfoMergeConfig -> ImportVariantsRequestInfoMergeConfig

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequestInfoMergeConfig -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequestInfoMergeConfig -> r

gmapQ :: (forall d. Data d => d -> u) -> ImportVariantsRequestInfoMergeConfig -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportVariantsRequestInfoMergeConfig -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportVariantsRequestInfoMergeConfig -> m ImportVariantsRequestInfoMergeConfig

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequestInfoMergeConfig -> m ImportVariantsRequestInfoMergeConfig

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequestInfoMergeConfig -> m ImportVariantsRequestInfoMergeConfig

Show ImportVariantsRequestInfoMergeConfig

Methods

showsPrec :: Int -> ImportVariantsRequestInfoMergeConfig -> ShowS

show :: ImportVariantsRequestInfoMergeConfig -> String

showList :: [ImportVariantsRequestInfoMergeConfig] -> ShowS

Generic ImportVariantsRequestInfoMergeConfig

Associated Types

type Rep ImportVariantsRequestInfoMergeConfig :: * -> *

Methods

from :: ImportVariantsRequestInfoMergeConfig -> Rep ImportVariantsRequestInfoMergeConfig x

to :: Rep ImportVariantsRequestInfoMergeConfig x -> ImportVariantsRequestInfoMergeConfig

ToJSON ImportVariantsRequestInfoMergeConfig

Methods

toJSON :: ImportVariantsRequestInfoMergeConfig -> Value

toEncoding :: ImportVariantsRequestInfoMergeConfig -> Encoding

toJSONList :: [ImportVariantsRequestInfoMergeConfig] -> Value

toEncodingList :: [ImportVariantsRequestInfoMergeConfig] -> Encoding

FromJSON ImportVariantsRequestInfoMergeConfig

Methods

parseJSON :: Value -> Parser ImportVariantsRequestInfoMergeConfig

parseJSONList :: Value -> Parser [ImportVariantsRequestInfoMergeConfig]

type Rep ImportVariantsRequestInfoMergeConfig

type Rep ImportVariantsRequestInfoMergeConfig = D1 (MetaData "ImportVariantsRequestInfoMergeConfig" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "ImportVariantsRequestInfoMergeConfig'" PrefixI True) (S1 (MetaSel (Just Symbol "_ivrimcAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text Text))))

importVariantsRequestInfoMergeConfig

Arguments

:: HashMap Text Text

ivrimcAddtional

-> ImportVariantsRequestInfoMergeConfig

Creates a value of ImportVariantsRequestInfoMergeConfig with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• ivrimcAddtional

ivrimcAddtional :: Lens' ImportVariantsRequestInfoMergeConfig (HashMap Text Text)

ReadInfo

data ReadInfo

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

See: readInfo smart constructor.

Instances

Eq ReadInfo

Methods

(==) :: ReadInfo -> ReadInfo -> Bool

(/=) :: ReadInfo -> ReadInfo -> Bool

Data ReadInfo

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReadInfo -> c ReadInfo

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReadInfo

toConstr :: ReadInfo -> Constr

dataTypeOf :: ReadInfo -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ReadInfo)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReadInfo)

gmapT :: (forall b. Data b => b -> b) -> ReadInfo -> ReadInfo

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReadInfo -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReadInfo -> r

gmapQ :: (forall d. Data d => d -> u) -> ReadInfo -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ReadInfo -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReadInfo -> m ReadInfo

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadInfo -> m ReadInfo

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadInfo -> m ReadInfo

Show ReadInfo

Methods

showsPrec :: Int -> ReadInfo -> ShowS

show :: ReadInfo -> String

showList :: [ReadInfo] -> ShowS

Generic ReadInfo

Associated Types

type Rep ReadInfo :: * -> *

Methods

from :: ReadInfo -> Rep ReadInfo x

to :: Rep ReadInfo x -> ReadInfo

ToJSON ReadInfo

Methods

toJSON :: ReadInfo -> Value

toEncoding :: ReadInfo -> Encoding

toJSONList :: [ReadInfo] -> Value

toEncodingList :: [ReadInfo] -> Encoding

FromJSON ReadInfo

Methods

parseJSON :: Value -> Parser ReadInfo

parseJSONList :: Value -> Parser [ReadInfo]

type Rep ReadInfo

type Rep ReadInfo = D1 (MetaData "ReadInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "ReadInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_riAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

readInfo

Arguments

:: HashMap Text [JSONValue]

riAddtional

-> ReadInfo

Creates a value of ReadInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• riAddtional

riAddtional :: Lens' ReadInfo (HashMap Text [JSONValue])

Exon

data Exon

Instances

Eq Exon

Methods

(==) :: Exon -> Exon -> Bool

(/=) :: Exon -> Exon -> Bool

Data Exon

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Exon -> c Exon

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Exon

toConstr :: Exon -> Constr

dataTypeOf :: Exon -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Exon)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Exon)

gmapT :: (forall b. Data b => b -> b) -> Exon -> Exon

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Exon -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Exon -> r

gmapQ :: (forall d. Data d => d -> u) -> Exon -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Exon -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Exon -> m Exon

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Exon -> m Exon

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Exon -> m Exon

Show Exon

Methods

showsPrec :: Int -> Exon -> ShowS

show :: Exon -> String

showList :: [Exon] -> ShowS

Generic Exon

Associated Types

type Rep Exon :: * -> *

Methods

from :: Exon -> Rep Exon x

to :: Rep Exon x -> Exon

ToJSON Exon

Methods

toJSON :: Exon -> Value

toEncoding :: Exon -> Encoding

toJSONList :: [Exon] -> Value

toEncodingList :: [Exon] -> Encoding

FromJSON Exon

Methods

parseJSON :: Value -> Parser Exon

parseJSONList :: Value -> Parser [Exon]

type Rep Exon

type Rep Exon = D1 (MetaData "Exon" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Exon'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_eStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((:*:) (S1 (MetaSel (Just Symbol "_eEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_eFrame") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))))

exon :: Exon

Creates a value of Exon with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• eStart
• eEnd
• eFrame

eStart :: Lens' Exon (Maybe Int64)

The start position of the exon on this annotation's reference sequence, 0-based inclusive. Note that this is relative to the reference start, and **not** the containing annotation start.

eEnd :: Lens' Exon (Maybe Int64)

The end position of the exon on this annotation's reference sequence, 0-based exclusive. Note that this is relative to the reference start, and *not* the containing annotation start.

eFrame :: Lens' Exon (Maybe Int32)

The frame of this exon. Contains a value of 0, 1, or 2, which indicates the offset of the first coding base of the exon within the reading frame of the coding DNA sequence, if any. This field is dependent on the strandedness of this annotation (see Annotation.reverse_strand). For forward stranded annotations, this offset is relative to the exon.start. For reverse strand annotations, this offset is relative to the exon.end `- 1`. Unset if this exon does not intersect the coding sequence. Upon creation of a transcript, the frame must be populated for all or none of the coding exons.

Status

data Status

The `Status` type defines a logical error model that is suitable for different programming environments, including REST APIs and RPC APIs. It is used by gRPC. The error model is designed to be: - Simple to use and understand for most users - Flexible enough to meet unexpected needs # Overview The `Status` message contains three pieces of data: error code, error message, and error details. The error code should be an enum value of google.rpc.Code, but it may accept additional error codes if needed. The error message should be a developer-facing English message that helps developers *understand* and *resolve* the error. If a localized user-facing error message is needed, put the localized message in the error details or localize it in the client. The optional error details may contain arbitrary information about the error. There is a predefined set of error detail types in the package `google.rpc` which can be used for common error conditions. # Language mapping The `Status` message is the logical representation of the error model, but it is not necessarily the actual wire format. When the `Status` message is exposed in different client libraries and different wire protocols, it can be mapped differently. For example, it will likely be mapped to some exceptions in Java, but more likely mapped to some error codes in C. # Other uses The error model and the `Status` message can be used in a variety of environments, either with or without APIs, to provide a consistent developer experience across different environments. Example uses of this error model include: - Partial errors. If a service needs to return partial errors to the client, it may embed the `Status` in the normal response to indicate the partial errors. - Workflow errors. A typical workflow has multiple steps. Each step may have a `Status` message for error reporting purpose. - Batch operations. If a client uses batch request and batch response, the `Status` message should be used directly inside batch response, one for each error sub-response. - Asynchronous operations. If an API call embeds asynchronous operation results in its response, the status of those operations should be represented directly using the `Status` message. - Logging. If some API errors are stored in logs, the message `Status` could be used directly after any stripping needed for security/privacy reasons.

See: status smart constructor.

Instances

Eq Status

Methods

(==) :: Status -> Status -> Bool

(/=) :: Status -> Status -> Bool

Data Status

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Status -> c Status

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Status

toConstr :: Status -> Constr

dataTypeOf :: Status -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Status)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Status)

gmapT :: (forall b. Data b => b -> b) -> Status -> Status

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Status -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Status -> r

gmapQ :: (forall d. Data d => d -> u) -> Status -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Status -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Status -> m Status

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Status -> m Status

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Status -> m Status

Show Status

Methods

showsPrec :: Int -> Status -> ShowS

show :: Status -> String

showList :: [Status] -> ShowS

Generic Status

Associated Types

type Rep Status :: * -> *

Methods

from :: Status -> Rep Status x

to :: Rep Status x -> Status

ToJSON Status

Methods

toJSON :: Status -> Value

toEncoding :: Status -> Encoding

toJSONList :: [Status] -> Value

toEncodingList :: [Status] -> Encoding

FromJSON Status

Methods

parseJSON :: Value -> Parser Status

parseJSONList :: Value -> Parser [Status]

type Rep Status

type Rep Status = D1 (MetaData "Status" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Status'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_sDetails") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [StatusDetailsItem]))) ((:*:) (S1 (MetaSel (Just Symbol "_sCode") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_sMessage") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

status :: Status

Creates a value of Status with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• sDetails
• sCode
• sMessage

sDetails :: Lens' Status [StatusDetailsItem]

A list of messages that carry the error details. There will be a common set of message types for APIs to use.

sCode :: Lens' Status (Maybe Int32)

The status code, which should be an enum value of google.rpc.Code.

sMessage :: Lens' Status (Maybe Text)

A developer-facing error message, which should be in English. Any user-facing error message should be localized and sent in the google.rpc.Status.details field, or localized by the client.

OperationSchema

data OperationSchema

An OperationMetadata object. This will always be returned with the Operation.

See: operationSchema smart constructor.

Instances

Eq OperationSchema

Methods

(==) :: OperationSchema -> OperationSchema -> Bool

(/=) :: OperationSchema -> OperationSchema -> Bool

Data OperationSchema

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationSchema -> c OperationSchema

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationSchema

toConstr :: OperationSchema -> Constr

dataTypeOf :: OperationSchema -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c OperationSchema)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationSchema)

gmapT :: (forall b. Data b => b -> b) -> OperationSchema -> OperationSchema

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationSchema -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationSchema -> r

gmapQ :: (forall d. Data d => d -> u) -> OperationSchema -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationSchema -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationSchema -> m OperationSchema

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationSchema -> m OperationSchema

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationSchema -> m OperationSchema

Show OperationSchema

Methods

showsPrec :: Int -> OperationSchema -> ShowS

show :: OperationSchema -> String

showList :: [OperationSchema] -> ShowS

Generic OperationSchema

Associated Types

type Rep OperationSchema :: * -> *

Methods

from :: OperationSchema -> Rep OperationSchema x

to :: Rep OperationSchema x -> OperationSchema

ToJSON OperationSchema

Methods

toJSON :: OperationSchema -> Value

toEncoding :: OperationSchema -> Encoding

toJSONList :: [OperationSchema] -> Value

toEncodingList :: [OperationSchema] -> Encoding

FromJSON OperationSchema

Methods

parseJSON :: Value -> Parser OperationSchema

parseJSONList :: Value -> Parser [OperationSchema]

type Rep OperationSchema

type Rep OperationSchema = D1 (MetaData "OperationSchema" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "OperationSchema'" PrefixI True) (S1 (MetaSel (Just Symbol "_osAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text JSONValue))))

operationSchema

Arguments

:: HashMap Text JSONValue

osAddtional

-> OperationSchema

Creates a value of OperationSchema with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• osAddtional

osAddtional :: Lens' OperationSchema (HashMap Text JSONValue)

Properties of the object. Contains field 'type with type URL.

VariantAnnotationEffect

data VariantAnnotationEffect

Effect of the variant on the coding sequence.

Constructors

EffectUnspecified

EFFECT_UNSPECIFIED

EffectOther

EFFECT_OTHER `EFFECT_OTHER` should be used when no other Effect will suffice.

Frameshift

FRAMESHIFT `FRAMESHIFT` indicates a mutation in which the insertion or deletion of nucleotides resulted in a frameshift change.

FramePreservingIndel

FRAME_PRESERVING_INDEL `FRAME_PRESERVING_INDEL` indicates a mutation in which a multiple of three nucleotides has been inserted or deleted, resulting in no change to the reading frame of the coding sequence.

SynonymousSnp

SYNONYMOUS_SNP `SYNONYMOUS_SNP` indicates a single nucleotide polymorphism mutation that results in no amino acid change.

NonsynonymousSnp

NONSYNONYMOUS_SNP `NONSYNONYMOUS_SNP` indicates a single nucleotide polymorphism mutation that results in an amino acid change.

StopGain

STOP_GAIN `STOP_GAIN` indicates a mutation that leads to the creation of a stop codon at the variant site. Frameshift mutations creating downstream stop codons do not count as `STOP_GAIN`.

StopLoss

STOP_LOSS `STOP_LOSS` indicates a mutation that eliminates a stop codon at the variant site.

SpliceSiteDisruption

SPLICE_SITE_DISRUPTION `SPLICE_SITE_DISRUPTION` indicates that this variant is found in a splice site for the associated transcript, and alters the normal splicing pattern.

Instances

Enum VariantAnnotationEffect

Methods

succ :: VariantAnnotationEffect -> VariantAnnotationEffect

pred :: VariantAnnotationEffect -> VariantAnnotationEffect

toEnum :: Int -> VariantAnnotationEffect

fromEnum :: VariantAnnotationEffect -> Int

enumFrom :: VariantAnnotationEffect -> [VariantAnnotationEffect]

enumFromThen :: VariantAnnotationEffect -> VariantAnnotationEffect -> [VariantAnnotationEffect]

enumFromTo :: VariantAnnotationEffect -> VariantAnnotationEffect -> [VariantAnnotationEffect]

enumFromThenTo :: VariantAnnotationEffect -> VariantAnnotationEffect -> VariantAnnotationEffect -> [VariantAnnotationEffect]

Eq VariantAnnotationEffect

Methods

(==) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool

(/=) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool

Data VariantAnnotationEffect

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantAnnotationEffect -> c VariantAnnotationEffect

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantAnnotationEffect

toConstr :: VariantAnnotationEffect -> Constr

dataTypeOf :: VariantAnnotationEffect -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantAnnotationEffect)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantAnnotationEffect)

gmapT :: (forall b. Data b => b -> b) -> VariantAnnotationEffect -> VariantAnnotationEffect

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationEffect -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationEffect -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantAnnotationEffect -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantAnnotationEffect -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantAnnotationEffect -> m VariantAnnotationEffect

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationEffect -> m VariantAnnotationEffect

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationEffect -> m VariantAnnotationEffect

Ord VariantAnnotationEffect

Methods

compare :: VariantAnnotationEffect -> VariantAnnotationEffect -> Ordering

(<) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool

(<=) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool

(>) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool

(>=) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool

max :: VariantAnnotationEffect -> VariantAnnotationEffect -> VariantAnnotationEffect

min :: VariantAnnotationEffect -> VariantAnnotationEffect -> VariantAnnotationEffect

Read VariantAnnotationEffect

Methods

readsPrec :: Int -> ReadS VariantAnnotationEffect

readList :: ReadS [VariantAnnotationEffect]

readPrec :: ReadPrec VariantAnnotationEffect

readListPrec :: ReadPrec [VariantAnnotationEffect]

Show VariantAnnotationEffect

Methods

showsPrec :: Int -> VariantAnnotationEffect -> ShowS

show :: VariantAnnotationEffect -> String

showList :: [VariantAnnotationEffect] -> ShowS

Generic VariantAnnotationEffect

Associated Types

type Rep VariantAnnotationEffect :: * -> *

Methods

from :: VariantAnnotationEffect -> Rep VariantAnnotationEffect x

to :: Rep VariantAnnotationEffect x -> VariantAnnotationEffect

Hashable VariantAnnotationEffect

Methods

hashWithSalt :: Int -> VariantAnnotationEffect -> Int

hash :: VariantAnnotationEffect -> Int

ToJSON VariantAnnotationEffect

Methods

toJSON :: VariantAnnotationEffect -> Value

toEncoding :: VariantAnnotationEffect -> Encoding

toJSONList :: [VariantAnnotationEffect] -> Value

toEncodingList :: [VariantAnnotationEffect] -> Encoding

FromJSON VariantAnnotationEffect

Methods

parseJSON :: Value -> Parser VariantAnnotationEffect

parseJSONList :: Value -> Parser [VariantAnnotationEffect]

FromHttpApiData VariantAnnotationEffect

Methods

parseUrlPiece :: Text -> Either Text VariantAnnotationEffect

parseHeader :: ByteString -> Either Text VariantAnnotationEffect

parseQueryParam :: Text -> Either Text VariantAnnotationEffect

ToHttpApiData VariantAnnotationEffect

Methods

toUrlPiece :: VariantAnnotationEffect -> Text

toHeader :: VariantAnnotationEffect -> ByteString

toQueryParam :: VariantAnnotationEffect -> Text

type Rep VariantAnnotationEffect

type Rep VariantAnnotationEffect = D1 (MetaData "VariantAnnotationEffect" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) ((:+:) ((:+:) ((:+:) (C1 (MetaCons "EffectUnspecified" PrefixI False) U1) (C1 (MetaCons "EffectOther" PrefixI False) U1)) ((:+:) (C1 (MetaCons "Frameshift" PrefixI False) U1) (C1 (MetaCons "FramePreservingIndel" PrefixI False) U1))) ((:+:) ((:+:) (C1 (MetaCons "SynonymousSnp" PrefixI False) U1) (C1 (MetaCons "NonsynonymousSnp" PrefixI False) U1)) ((:+:) (C1 (MetaCons "StopGain" PrefixI False) U1) ((:+:) (C1 (MetaCons "StopLoss" PrefixI False) U1) (C1 (MetaCons "SpliceSiteDisruption" PrefixI False) U1)))))

Variant

data Variant

A variant represents a change in DNA sequence relative to a reference sequence. For example, a variant could represent a SNP or an insertion. Variants belong to a variant set. For more genomics resource definitions, see Fundamentals of Google Genomics Each of the calls on a variant represent a determination of genotype with respect to that variant. For example, a call might assign probability of 0.32 to the occurrence of a SNP named rs1234 in a sample named NA12345. A call belongs to a call set, which contains related calls typically from one sample.

See: variant smart constructor.

Instances

Eq Variant

Methods

(==) :: Variant -> Variant -> Bool

(/=) :: Variant -> Variant -> Bool

Data Variant

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Variant -> c Variant

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Variant

toConstr :: Variant -> Constr

dataTypeOf :: Variant -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Variant)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Variant)

gmapT :: (forall b. Data b => b -> b) -> Variant -> Variant

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Variant -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Variant -> r

gmapQ :: (forall d. Data d => d -> u) -> Variant -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Variant -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Variant -> m Variant

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Variant -> m Variant

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Variant -> m Variant

Show Variant

Methods

showsPrec :: Int -> Variant -> ShowS

show :: Variant -> String

showList :: [Variant] -> ShowS

Generic Variant

Associated Types

type Rep Variant :: * -> *

Methods

from :: Variant -> Rep Variant x

to :: Rep Variant x -> Variant

ToJSON Variant

Methods

toJSON :: Variant -> Value

toEncoding :: Variant -> Encoding

toJSONList :: [Variant] -> Value

toEncodingList :: [Variant] -> Encoding

FromJSON Variant

Methods

parseJSON :: Value -> Parser Variant

parseJSONList :: Value -> Parser [Variant]

type Rep Variant

type Rep Variant = D1 (MetaData "Variant" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Variant'" PrefixI True) ((:*:) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_vVariantSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_vCreated") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_vStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))))) ((:*:) (S1 (MetaSel (Just Symbol "_vAlternateBases") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) ((:*:) (S1 (MetaSel (Just Symbol "_vReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vNames") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_vEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((:*:) (S1 (MetaSel (Just Symbol "_vReferenceBases") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_vQuality") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Double)))) (S1 (MetaSel (Just Symbol "_vFilter") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((:*:) (S1 (MetaSel (Just Symbol "_vInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantInfo))) (S1 (MetaSel (Just Symbol "_vCalls") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [VariantCall]))))))))

variant :: Variant

Creates a value of Variant with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• vVariantSetId
• vCreated
• vStart
• vAlternateBases
• vReferenceName
• vNames
• vEnd
• vReferenceBases
• vId
• vQuality
• vFilter
• vInfo
• vCalls

vVariantSetId :: Lens' Variant (Maybe Text)

The ID of the variant set this variant belongs to.

vCreated :: Lens' Variant (Maybe Int64)

The date this variant was created, in milliseconds from the epoch.

vStart :: Lens' Variant (Maybe Int64)

The position at which this variant occurs (0-based). This corresponds to the first base of the string of reference bases.

vAlternateBases :: Lens' Variant [Text]

The bases that appear instead of the reference bases.

vReferenceName :: Lens' Variant (Maybe Text)

The reference on which this variant occurs. (such as `chr20` or `X`)

vNames :: Lens' Variant [Text]

Names for the variant, for example a RefSNP ID.

vEnd :: Lens' Variant (Maybe Int64)

The end position (0-based) of this variant. This corresponds to the first base after the last base in the reference allele. So, the length of the reference allele is (end - start). This is useful for variants that don't explicitly give alternate bases, for example large deletions.

vReferenceBases :: Lens' Variant (Maybe Text)

The reference bases for this variant. They start at the given position.

vId :: Lens' Variant (Maybe Text)

The server-generated variant ID, unique across all variants.

vQuality :: Lens' Variant (Maybe Double)

A measure of how likely this variant is to be real. A higher value is better.

vFilter :: Lens' Variant [Text]

A list of filters (normally quality filters) this variant has failed. `PASS` indicates this variant has passed all filters.

vInfo :: Lens' Variant (Maybe VariantInfo)

A map of additional variant information. This must be of the form map (string key mapping to a list of string values).

vCalls :: Lens' Variant [VariantCall]

The variant calls for this particular variant. Each one represents the determination of genotype with respect to this variant.

Annotation

data Annotation

An annotation describes a region of reference genome. The value of an annotation may be one of several canonical types, supplemented by arbitrary info tags. An annotation is not inherently associated with a specific sample or individual (though a client could choose to use annotations in this way). Example canonical annotation types are `GENE` and `VARIANT`.

See: annotation smart constructor.

Instances

Eq Annotation

Methods

(==) :: Annotation -> Annotation -> Bool

(/=) :: Annotation -> Annotation -> Bool

Data Annotation

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Annotation -> c Annotation

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Annotation

toConstr :: Annotation -> Constr

dataTypeOf :: Annotation -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Annotation)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Annotation)

gmapT :: (forall b. Data b => b -> b) -> Annotation -> Annotation

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Annotation -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Annotation -> r

gmapQ :: (forall d. Data d => d -> u) -> Annotation -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Annotation -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Annotation -> m Annotation

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Annotation -> m Annotation

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Annotation -> m Annotation

Show Annotation

Methods

showsPrec :: Int -> Annotation -> ShowS

show :: Annotation -> String

showList :: [Annotation] -> ShowS

Generic Annotation

Associated Types

type Rep Annotation :: * -> *

Methods

from :: Annotation -> Rep Annotation x

to :: Rep Annotation x -> Annotation

ToJSON Annotation

Methods

toJSON :: Annotation -> Value

toEncoding :: Annotation -> Encoding

toJSONList :: [Annotation] -> Value

toEncodingList :: [Annotation] -> Encoding

FromJSON Annotation

Methods

parseJSON :: Value -> Parser Annotation

parseJSONList :: Value -> Parser [Annotation]

type Rep Annotation

type Rep Annotation = D1 (MetaData "Annotation" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Annotation'" PrefixI True) ((:*:) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_aVariant") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantAnnotation))) ((:*:) (S1 (MetaSel (Just Symbol "_aAnnotationSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_aStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))))) ((:*:) (S1 (MetaSel (Just Symbol "_aReverseStrand") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))) ((:*:) (S1 (MetaSel (Just Symbol "_aReferenceId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_aReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_aName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_aEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_aId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) (S1 (MetaSel (Just Symbol "_aType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe AnnotationType))) ((:*:) (S1 (MetaSel (Just Symbol "_aTranscript") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Transcript))) (S1 (MetaSel (Just Symbol "_aInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe AnnotationInfo))))))))

annotation :: Annotation

Creates a value of Annotation with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• aVariant
• aAnnotationSetId
• aStart
• aReverseStrand
• aReferenceId
• aReferenceName
• aName
• aEnd
• aId
• aType
• aTranscript
• aInfo

aVariant :: Lens' Annotation (Maybe VariantAnnotation)

A variant annotation, which describes the effect of a variant on the genome, the coding sequence, and/or higher level consequences at the organism level e.g. pathogenicity. This field is only set for annotations of type `VARIANT`.

aAnnotationSetId :: Lens' Annotation (Maybe Text)

The annotation set to which this annotation belongs.

aStart :: Lens' Annotation (Maybe Int64)

The start position of the range on the reference, 0-based inclusive.

aReverseStrand :: Lens' Annotation (Maybe Bool)

Whether this range refers to the reverse strand, as opposed to the forward strand. Note that regardless of this field, the start/end position of the range always refer to the forward strand.

aReferenceId :: Lens' Annotation (Maybe Text)

The ID of the Google Genomics reference associated with this range.

aReferenceName :: Lens' Annotation (Maybe Text)

The display name corresponding to the reference specified by `referenceId`, for example `chr1`, `1`, or `chrX`.

aName :: Lens' Annotation (Maybe Text)

The display name of this annotation.

aEnd :: Lens' Annotation (Maybe Int64)

The end position of the range on the reference, 0-based exclusive.

aId :: Lens' Annotation (Maybe Text)

The server-generated annotation ID, unique across all annotations.

aType :: Lens' Annotation (Maybe AnnotationType)

The data type for this annotation. Must match the containing annotation set's type.

aTranscript :: Lens' Annotation (Maybe Transcript)

A transcript value represents the assertion that a particular region of the reference genome may be transcribed as RNA. An alternative splicing pattern would be represented as a separate transcript object. This field is only set for annotations of type `TRANSCRIPT`.

aInfo :: Lens' Annotation (Maybe AnnotationInfo)

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

ListBasesResponse

data ListBasesResponse

Instances

Eq ListBasesResponse

Methods

(==) :: ListBasesResponse -> ListBasesResponse -> Bool

(/=) :: ListBasesResponse -> ListBasesResponse -> Bool

Data ListBasesResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ListBasesResponse -> c ListBasesResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ListBasesResponse

toConstr :: ListBasesResponse -> Constr

dataTypeOf :: ListBasesResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ListBasesResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ListBasesResponse)

gmapT :: (forall b. Data b => b -> b) -> ListBasesResponse -> ListBasesResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ListBasesResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ListBasesResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> ListBasesResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ListBasesResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ListBasesResponse -> m ListBasesResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ListBasesResponse -> m ListBasesResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ListBasesResponse -> m ListBasesResponse

Show ListBasesResponse

Methods

showsPrec :: Int -> ListBasesResponse -> ShowS

show :: ListBasesResponse -> String

showList :: [ListBasesResponse] -> ShowS

Generic ListBasesResponse

Associated Types

type Rep ListBasesResponse :: * -> *

Methods

from :: ListBasesResponse -> Rep ListBasesResponse x

to :: Rep ListBasesResponse x -> ListBasesResponse

ToJSON ListBasesResponse

Methods

toJSON :: ListBasesResponse -> Value

toEncoding :: ListBasesResponse -> Encoding

toJSONList :: [ListBasesResponse] -> Value

toEncodingList :: [ListBasesResponse] -> Encoding

FromJSON ListBasesResponse

Methods

parseJSON :: Value -> Parser ListBasesResponse

parseJSONList :: Value -> Parser [ListBasesResponse]

type Rep ListBasesResponse

type Rep ListBasesResponse = D1 (MetaData "ListBasesResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ListBasesResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_lbrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_lbrOffSet") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_lbrSequence") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

listBasesResponse :: ListBasesResponse

Creates a value of ListBasesResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• lbrNextPageToken
• lbrOffSet
• lbrSequence

lbrNextPageToken :: Lens' ListBasesResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

lbrOffSet :: Lens' ListBasesResponse (Maybe Int64)

The offset position (0-based) of the given `sequence` from the start of this `Reference`. This value will differ for each page in a paginated request.

lbrSequence :: Lens' ListBasesResponse (Maybe Text)

A substring of the bases that make up this reference.

ListOperationsResponse

data ListOperationsResponse

The response message for Operations.ListOperations.

See: listOperationsResponse smart constructor.

Instances

Eq ListOperationsResponse

Methods

(==) :: ListOperationsResponse -> ListOperationsResponse -> Bool

(/=) :: ListOperationsResponse -> ListOperationsResponse -> Bool

Data ListOperationsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ListOperationsResponse -> c ListOperationsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ListOperationsResponse

toConstr :: ListOperationsResponse -> Constr

dataTypeOf :: ListOperationsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ListOperationsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ListOperationsResponse)

gmapT :: (forall b. Data b => b -> b) -> ListOperationsResponse -> ListOperationsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ListOperationsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ListOperationsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> ListOperationsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ListOperationsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ListOperationsResponse -> m ListOperationsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ListOperationsResponse -> m ListOperationsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ListOperationsResponse -> m ListOperationsResponse

Show ListOperationsResponse

Methods

showsPrec :: Int -> ListOperationsResponse -> ShowS

show :: ListOperationsResponse -> String

showList :: [ListOperationsResponse] -> ShowS

Generic ListOperationsResponse

Associated Types

type Rep ListOperationsResponse :: * -> *

Methods

from :: ListOperationsResponse -> Rep ListOperationsResponse x

to :: Rep ListOperationsResponse x -> ListOperationsResponse

ToJSON ListOperationsResponse

Methods

toJSON :: ListOperationsResponse -> Value

toEncoding :: ListOperationsResponse -> Encoding

toJSONList :: [ListOperationsResponse] -> Value

toEncodingList :: [ListOperationsResponse] -> Encoding

FromJSON ListOperationsResponse

Methods

parseJSON :: Value -> Parser ListOperationsResponse

parseJSONList :: Value -> Parser [ListOperationsResponse]

type Rep ListOperationsResponse

type Rep ListOperationsResponse = D1 (MetaData "ListOperationsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ListOperationsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_lorNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_lorOperations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Operation])))))

listOperationsResponse :: ListOperationsResponse

Creates a value of ListOperationsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• lorNextPageToken
• lorOperations

lorNextPageToken :: Lens' ListOperationsResponse (Maybe Text)

The standard List next-page token.

lorOperations :: Lens' ListOperationsResponse [Operation]

A list of operations that matches the specified filter in the request.

GetIAMPolicyRequest

data GetIAMPolicyRequest

Request message for `GetIamPolicy` method.

See: getIAMPolicyRequest smart constructor.

Instances

Eq GetIAMPolicyRequest

Methods

(==) :: GetIAMPolicyRequest -> GetIAMPolicyRequest -> Bool

(/=) :: GetIAMPolicyRequest -> GetIAMPolicyRequest -> Bool

Data GetIAMPolicyRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> GetIAMPolicyRequest -> c GetIAMPolicyRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c GetIAMPolicyRequest

toConstr :: GetIAMPolicyRequest -> Constr

dataTypeOf :: GetIAMPolicyRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c GetIAMPolicyRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c GetIAMPolicyRequest)

gmapT :: (forall b. Data b => b -> b) -> GetIAMPolicyRequest -> GetIAMPolicyRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> GetIAMPolicyRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> GetIAMPolicyRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> GetIAMPolicyRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> GetIAMPolicyRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> GetIAMPolicyRequest -> m GetIAMPolicyRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> GetIAMPolicyRequest -> m GetIAMPolicyRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> GetIAMPolicyRequest -> m GetIAMPolicyRequest

Show GetIAMPolicyRequest

Methods

showsPrec :: Int -> GetIAMPolicyRequest -> ShowS

show :: GetIAMPolicyRequest -> String

showList :: [GetIAMPolicyRequest] -> ShowS

Generic GetIAMPolicyRequest

Associated Types

type Rep GetIAMPolicyRequest :: * -> *

Methods

from :: GetIAMPolicyRequest -> Rep GetIAMPolicyRequest x

to :: Rep GetIAMPolicyRequest x -> GetIAMPolicyRequest

ToJSON GetIAMPolicyRequest

Methods

toJSON :: GetIAMPolicyRequest -> Value

toEncoding :: GetIAMPolicyRequest -> Encoding

toJSONList :: [GetIAMPolicyRequest] -> Value

toEncodingList :: [GetIAMPolicyRequest] -> Encoding

FromJSON GetIAMPolicyRequest

Methods

parseJSON :: Value -> Parser GetIAMPolicyRequest

parseJSONList :: Value -> Parser [GetIAMPolicyRequest]

type Rep GetIAMPolicyRequest

type Rep GetIAMPolicyRequest = D1 (MetaData "GetIAMPolicyRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "GetIAMPolicyRequest'" PrefixI False) U1)

getIAMPolicyRequest :: GetIAMPolicyRequest

Creates a value of GetIAMPolicyRequest with the minimum fields required to make a request.

CancelOperationRequest

data CancelOperationRequest

The request message for Operations.CancelOperation.

See: cancelOperationRequest smart constructor.

Instances

Eq CancelOperationRequest

Methods

(==) :: CancelOperationRequest -> CancelOperationRequest -> Bool

(/=) :: CancelOperationRequest -> CancelOperationRequest -> Bool

Data CancelOperationRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CancelOperationRequest -> c CancelOperationRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CancelOperationRequest

toConstr :: CancelOperationRequest -> Constr

dataTypeOf :: CancelOperationRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c CancelOperationRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CancelOperationRequest)

gmapT :: (forall b. Data b => b -> b) -> CancelOperationRequest -> CancelOperationRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CancelOperationRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CancelOperationRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> CancelOperationRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> CancelOperationRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> CancelOperationRequest -> m CancelOperationRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CancelOperationRequest -> m CancelOperationRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CancelOperationRequest -> m CancelOperationRequest

Show CancelOperationRequest

Methods

showsPrec :: Int -> CancelOperationRequest -> ShowS

show :: CancelOperationRequest -> String

showList :: [CancelOperationRequest] -> ShowS

Generic CancelOperationRequest

Associated Types

type Rep CancelOperationRequest :: * -> *

Methods

from :: CancelOperationRequest -> Rep CancelOperationRequest x

to :: Rep CancelOperationRequest x -> CancelOperationRequest

ToJSON CancelOperationRequest

Methods

toJSON :: CancelOperationRequest -> Value

toEncoding :: CancelOperationRequest -> Encoding

toJSONList :: [CancelOperationRequest] -> Value

toEncodingList :: [CancelOperationRequest] -> Encoding

FromJSON CancelOperationRequest

Methods

parseJSON :: Value -> Parser CancelOperationRequest

parseJSONList :: Value -> Parser [CancelOperationRequest]

type Rep CancelOperationRequest

type Rep CancelOperationRequest = D1 (MetaData "CancelOperationRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "CancelOperationRequest'" PrefixI False) U1)

cancelOperationRequest :: CancelOperationRequest

Creates a value of CancelOperationRequest with the minimum fields required to make a request.

DataSet

data DataSet

A Dataset is a collection of genomic data. For more genomics resource definitions, see Fundamentals of Google Genomics

See: dataSet smart constructor.

Instances

Eq DataSet

Methods

(==) :: DataSet -> DataSet -> Bool

(/=) :: DataSet -> DataSet -> Bool

Data DataSet

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> DataSet -> c DataSet

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c DataSet

toConstr :: DataSet -> Constr

dataTypeOf :: DataSet -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c DataSet)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c DataSet)

gmapT :: (forall b. Data b => b -> b) -> DataSet -> DataSet

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> DataSet -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> DataSet -> r

gmapQ :: (forall d. Data d => d -> u) -> DataSet -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> DataSet -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> DataSet -> m DataSet

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> DataSet -> m DataSet

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> DataSet -> m DataSet

Show DataSet

Methods

showsPrec :: Int -> DataSet -> ShowS

show :: DataSet -> String

showList :: [DataSet] -> ShowS

Generic DataSet

Associated Types

type Rep DataSet :: * -> *

Methods

from :: DataSet -> Rep DataSet x

to :: Rep DataSet x -> DataSet

ToJSON DataSet

Methods

toJSON :: DataSet -> Value

toEncoding :: DataSet -> Encoding

toJSONList :: [DataSet] -> Value

toEncodingList :: [DataSet] -> Encoding

FromJSON DataSet

Methods

parseJSON :: Value -> Parser DataSet

parseJSONList :: Value -> Parser [DataSet]

type Rep DataSet

type Rep DataSet = D1 (MetaData "DataSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "DataSet'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_dsName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_dsId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_dsProjectId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_dsCreateTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime'))))))

dataSet :: DataSet

Creates a value of DataSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• dsName
• dsId
• dsProjectId
• dsCreateTime

dsName :: Lens' DataSet (Maybe Text)

The dataset name.

dsId :: Lens' DataSet (Maybe Text)

The server-generated dataset ID, unique across all datasets.

dsProjectId :: Lens' DataSet (Maybe Text)

The Google Cloud project ID that this dataset belongs to.

dsCreateTime :: Lens' DataSet (Maybe UTCTime)

The time this dataset was created, in seconds from the epoch.

Read'

data Read'

A read alignment describes a linear alignment of a string of DNA to a reference sequence, in addition to metadata about the fragment (the molecule of DNA sequenced) and the read (the bases which were read by the sequencer). A read is equivalent to a line in a SAM file. A read belongs to exactly one read group and exactly one read group set. For more genomics resource definitions, see Fundamentals of Google Genomics ### Reverse-stranded reads Mapped reads (reads having a non-null `alignment`) can be aligned to either the forward or the reverse strand of their associated reference. Strandedness of a mapped read is encoded by `alignment.position.reverseStrand`. If we consider the reference to be a forward-stranded coordinate space of `[0, reference.length)` with `0` as the left-most position and `reference.length` as the right-most position, reads are always aligned left to right. That is, `alignment.position.position` always refers to the left-most reference coordinate and `alignment.cigar` describes the alignment of this read to the reference from left to right. All per-base fields such as `alignedSequence` and `alignedQuality` share this same left-to-right orientation; this is true of reads which are aligned to either strand. For reverse-stranded reads, this means that `alignedSequence` is the reverse complement of the bases that were originally reported by the sequencing machine. ### Generating a reference-aligned sequence string When interacting with mapped reads, it's often useful to produce a string representing the local alignment of the read to reference. The following pseudocode demonstrates one way of doing this: out = "" offset = 0 for c in read.alignment.cigar { switch c.operation { case "ALIGNMENT_MATCH", "SEQUENCE_MATCH", "SEQUENCE_MISMATCH": out += read.alignedSequence[offset:offset+c.operationLength] offset += c.operationLength break case "CLIP_SOFT", "INSERT": offset += c.operationLength break case "PAD": out += repeat("*", c.operationLength) break case "DELETE": out += repeat("-", c.operationLength) break case "SKIP": out += repeat(" ", c.operationLength) break case "CLIP_HARD": break } } return out ### Converting to SAM's CIGAR string The following pseudocode generates a SAM CIGAR string from the `cigar` field. Note that this is a lossy conversion (`cigar.referenceSequence` is lost). cigarMap = { "ALIGNMENT_MATCH": "M", "INSERT": "I", "DELETE": "D", "SKIP": "N", "CLIP_SOFT": "S", "CLIP_HARD": "H", "PAD": "P", "SEQUENCE_MATCH": "=", "SEQUENCE_MISMATCH": "X", } cigarStr = "" for c in read.alignment.cigar { cigarStr += c.operationLength + cigarMap[c.operation] } return cigarStr

See: read' smart constructor.

Instances

Eq Read'

Methods

(==) :: Read' -> Read' -> Bool

(/=) :: Read' -> Read' -> Bool

Data Read'

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Read' -> c Read'

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Read'

toConstr :: Read' -> Constr

dataTypeOf :: Read' -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Read')

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Read')

gmapT :: (forall b. Data b => b -> b) -> Read' -> Read'

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Read' -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Read' -> r

gmapQ :: (forall d. Data d => d -> u) -> Read' -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Read' -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Read' -> m Read'

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Read' -> m Read'

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Read' -> m Read'

Show Read'

Methods

showsPrec :: Int -> Read' -> ShowS

show :: Read' -> String

showList :: [Read'] -> ShowS

Generic Read'

Associated Types

type Rep Read' :: * -> *

Methods

from :: Read' -> Rep Read' x

to :: Rep Read' x -> Read'

ToJSON Read'

Methods

toJSON :: Read' -> Value

toEncoding :: Read' -> Encoding

toJSONList :: [Read'] -> Value

toEncodingList :: [Read'] -> Encoding

FromJSON Read'

Methods

parseJSON :: Value -> Parser Read'

parseJSONList :: Value -> Parser [Read']

type Rep Read'

type Rep Read' = D1 (MetaData "Read'" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Read''" PrefixI True) ((:*:) ((:*:) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_rFragmentLength") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_rDuplicateFragment") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool)))) ((:*:) (S1 (MetaSel (Just Symbol "_rReadGroupSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rNextMatePosition") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Position))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_rFailedVendorQualityChecks") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))) (S1 (MetaSel (Just Symbol "_rAlignment") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe LinearAlignment)))) ((:*:) (S1 (MetaSel (Just Symbol "_rFragmentName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rNumberReads") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))))) ((:*:) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_rId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rSecondaryAlignment") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool)))) ((:*:) (S1 (MetaSel (Just Symbol "_rReadGroupId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rSupplementaryAlignment") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_rAlignedSequence") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rProperPlacement") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool)))) ((:*:) (S1 (MetaSel (Just Symbol "_rInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ReadInfo))) ((:*:) (S1 (MetaSel (Just Symbol "_rReadNumber") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_rAlignedQuality") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Textual Int32])))))))))

read' :: Read'

Creates a value of Read with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• rFragmentLength
• rDuplicateFragment
• rReadGroupSetId
• rNextMatePosition
• rFailedVendorQualityChecks
• rAlignment
• rFragmentName
• rNumberReads
• rId
• rSecondaryAlignment
• rReadGroupId
• rSupplementaryAlignment
• rAlignedSequence
• rProperPlacement
• rInfo
• rReadNumber
• rAlignedQuality

rFragmentLength :: Lens' Read' (Maybe Int32)

The observed length of the fragment, equivalent to TLEN in SAM.

rDuplicateFragment :: Lens' Read' (Maybe Bool)

The fragment is a PCR or optical duplicate (SAM flag 0x400).

rReadGroupSetId :: Lens' Read' (Maybe Text)

The ID of the read group set this read belongs to. A read belongs to exactly one read group set.

rNextMatePosition :: Lens' Read' (Maybe Position)

The mapping of the primary alignment of the `(readNumber+1)%numberReads` read in the fragment. It replaces mate position and mate strand in SAM.

rFailedVendorQualityChecks :: Lens' Read' (Maybe Bool)

Whether this read did not pass filters, such as platform or vendor quality controls (SAM flag 0x200).

rAlignment :: Lens' Read' (Maybe LinearAlignment)

The linear alignment for this alignment record. This field is null for unmapped reads.

rFragmentName :: Lens' Read' (Maybe Text)

The fragment name. Equivalent to QNAME (query template name) in SAM.

rNumberReads :: Lens' Read' (Maybe Int32)

The number of reads in the fragment (extension to SAM flag 0x1).

rId :: Lens' Read' (Maybe Text)

The server-generated read ID, unique across all reads. This is different from the `fragmentName`.

rSecondaryAlignment :: Lens' Read' (Maybe Bool)

Whether this alignment is secondary. Equivalent to SAM flag 0x100. A secondary alignment represents an alternative to the primary alignment for this read. Aligners may return secondary alignments if a read can map ambiguously to multiple coordinates in the genome. By convention, each read has one and only one alignment where both `secondaryAlignment` and `supplementaryAlignment` are false.

rReadGroupId :: Lens' Read' (Maybe Text)

The ID of the read group this read belongs to. A read belongs to exactly one read group. This is a server-generated ID which is distinct from SAM's RG tag (for that value, see ReadGroup.name).

rSupplementaryAlignment :: Lens' Read' (Maybe Bool)

Whether this alignment is supplementary. Equivalent to SAM flag 0x800. Supplementary alignments are used in the representation of a chimeric alignment. In a chimeric alignment, a read is split into multiple linear alignments that map to different reference contigs. The first linear alignment in the read will be designated as the representative alignment; the remaining linear alignments will be designated as supplementary alignments. These alignments may have different mapping quality scores. In each linear alignment in a chimeric alignment, the read will be hard clipped. The `alignedSequence` and `alignedQuality` fields in the alignment record will only represent the bases for its respective linear alignment.

rAlignedSequence :: Lens' Read' (Maybe Text)

The bases of the read sequence contained in this alignment record, **without CIGAR operations applied** (equivalent to SEQ in SAM). `alignedSequence` and `alignedQuality` may be shorter than the full read sequence and quality. This will occur if the alignment is part of a chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR for this read will begin/end with a hard clip operator that will indicate the length of the excised sequence.

rProperPlacement :: Lens' Read' (Maybe Bool)

The orientation and the distance between reads from the fragment are consistent with the sequencing protocol (SAM flag 0x2).

rInfo :: Lens' Read' (Maybe ReadInfo)

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

rReadNumber :: Lens' Read' (Maybe Int32)

The read number in sequencing. 0-based and less than numberReads. This field replaces SAM flag 0x40 and 0x80.

rAlignedQuality :: Lens' Read' [Int32]

The quality of the read sequence contained in this alignment record (equivalent to QUAL in SAM). `alignedSequence` and `alignedQuality` may be shorter than the full read sequence and quality. This will occur if the alignment is part of a chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR for this read will begin/end with a hard clip operator that will indicate the length of the excised sequence.

OperationMetadataLabels

data OperationMetadataLabels

Optionally provided by the caller when submitting the request that creates the operation.

See: operationMetadataLabels smart constructor.

Instances

Eq OperationMetadataLabels

Methods

(==) :: OperationMetadataLabels -> OperationMetadataLabels -> Bool

(/=) :: OperationMetadataLabels -> OperationMetadataLabels -> Bool

Data OperationMetadataLabels

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationMetadataLabels -> c OperationMetadataLabels

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationMetadataLabels

toConstr :: OperationMetadataLabels -> Constr

dataTypeOf :: OperationMetadataLabels -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c OperationMetadataLabels)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationMetadataLabels)

gmapT :: (forall b. Data b => b -> b) -> OperationMetadataLabels -> OperationMetadataLabels

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataLabels -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataLabels -> r

gmapQ :: (forall d. Data d => d -> u) -> OperationMetadataLabels -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationMetadataLabels -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationMetadataLabels -> m OperationMetadataLabels

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataLabels -> m OperationMetadataLabels

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataLabels -> m OperationMetadataLabels

Show OperationMetadataLabels

Methods

showsPrec :: Int -> OperationMetadataLabels -> ShowS

show :: OperationMetadataLabels -> String

showList :: [OperationMetadataLabels] -> ShowS

Generic OperationMetadataLabels

Associated Types

type Rep OperationMetadataLabels :: * -> *

Methods

from :: OperationMetadataLabels -> Rep OperationMetadataLabels x

to :: Rep OperationMetadataLabels x -> OperationMetadataLabels

ToJSON OperationMetadataLabels

Methods

toJSON :: OperationMetadataLabels -> Value

toEncoding :: OperationMetadataLabels -> Encoding

toJSONList :: [OperationMetadataLabels] -> Value

toEncodingList :: [OperationMetadataLabels] -> Encoding

FromJSON OperationMetadataLabels

Methods

parseJSON :: Value -> Parser OperationMetadataLabels

parseJSONList :: Value -> Parser [OperationMetadataLabels]

type Rep OperationMetadataLabels

type Rep OperationMetadataLabels = D1 (MetaData "OperationMetadataLabels" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "OperationMetadataLabels'" PrefixI True) (S1 (MetaSel (Just Symbol "_omlAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text Text))))

operationMetadataLabels

Arguments

:: HashMap Text Text

omlAddtional

-> OperationMetadataLabels

Creates a value of OperationMetadataLabels with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• omlAddtional

omlAddtional :: Lens' OperationMetadataLabels (HashMap Text Text)

VariantCall

data VariantCall

A call represents the determination of genotype with respect to a particular variant. It may include associated information such as quality and phasing. For example, a call might assign a probability of 0.32 to the occurrence of a SNP named rs1234 in a call set with the name NA12345.

See: variantCall smart constructor.

Instances

Eq VariantCall

Methods

(==) :: VariantCall -> VariantCall -> Bool

(/=) :: VariantCall -> VariantCall -> Bool

Data VariantCall

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantCall -> c VariantCall

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantCall

toConstr :: VariantCall -> Constr

dataTypeOf :: VariantCall -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantCall)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantCall)

gmapT :: (forall b. Data b => b -> b) -> VariantCall -> VariantCall

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantCall -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantCall -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantCall -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantCall -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantCall -> m VariantCall

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantCall -> m VariantCall

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantCall -> m VariantCall

Show VariantCall

Methods

showsPrec :: Int -> VariantCall -> ShowS

show :: VariantCall -> String

showList :: [VariantCall] -> ShowS

Generic VariantCall

Associated Types

type Rep VariantCall :: * -> *

Methods

from :: VariantCall -> Rep VariantCall x

to :: Rep VariantCall x -> VariantCall

ToJSON VariantCall

Methods

toJSON :: VariantCall -> Value

toEncoding :: VariantCall -> Encoding

toJSONList :: [VariantCall] -> Value

toEncodingList :: [VariantCall] -> Encoding

FromJSON VariantCall

Methods

parseJSON :: Value -> Parser VariantCall

parseJSONList :: Value -> Parser [VariantCall]

type Rep VariantCall

type Rep VariantCall = D1 (MetaData "VariantCall" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "VariantCall'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_vcGenotypeLikelihood") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Textual Double]))) ((:*:) (S1 (MetaSel (Just Symbol "_vcCallSetName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vcPhaseset") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) (S1 (MetaSel (Just Symbol "_vcCallSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_vcGenotype") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Textual Int32]))) (S1 (MetaSel (Just Symbol "_vcInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantCallInfo)))))))

variantCall :: VariantCall

Creates a value of VariantCall with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• vcGenotypeLikelihood
• vcCallSetName
• vcPhaseset
• vcCallSetId
• vcGenotype
• vcInfo

vcGenotypeLikelihood :: Lens' VariantCall [Double]

The genotype likelihoods for this variant call. Each array entry represents how likely a specific genotype is for this call. The value ordering is defined by the GL tag in the VCF spec. If Phred-scaled genotype likelihood scores (PL) are available and log10(P) genotype likelihood scores (GL) are not, PL scores are converted to GL scores. If both are available, PL scores are stored in `info`.

vcCallSetName :: Lens' VariantCall (Maybe Text)

The name of the call set this variant call belongs to.

vcPhaseset :: Lens' VariantCall (Maybe Text)

If this field is present, this variant call's genotype ordering implies the phase of the bases and is consistent with any other variant calls in the same reference sequence which have the same phaseset value. When importing data from VCF, if the genotype data was phased but no phase set was specified this field will be set to `*`.

vcCallSetId :: Lens' VariantCall (Maybe Text)

The ID of the call set this variant call belongs to.

vcGenotype :: Lens' VariantCall [Int32]

The genotype of this variant call. Each value represents either the value of the `referenceBases` field or a 1-based index into `alternateBases`. If a variant had a `referenceBases` value of `T` and an `alternateBases` value of `["A", "C"]`, and the `genotype` was `[2, 1]`, that would mean the call represented the heterozygous value `CA` for this variant. If the `genotype` was instead `[0, 1]`, the represented value would be `TA`. Ordering of the genotype values is important if the `phaseset` is present. If a genotype is not called (that is, a `.` is present in the GT string) -1 is returned.

vcInfo :: Lens' VariantCall (Maybe VariantCallInfo)

A map of additional variant call information. This must be of the form map (string key mapping to a list of string values).

BatchCreateAnnotationsRequest

data BatchCreateAnnotationsRequest

Instances

Eq BatchCreateAnnotationsRequest

Methods

(==) :: BatchCreateAnnotationsRequest -> BatchCreateAnnotationsRequest -> Bool

(/=) :: BatchCreateAnnotationsRequest -> BatchCreateAnnotationsRequest -> Bool

Data BatchCreateAnnotationsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> BatchCreateAnnotationsRequest -> c BatchCreateAnnotationsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c BatchCreateAnnotationsRequest

toConstr :: BatchCreateAnnotationsRequest -> Constr

dataTypeOf :: BatchCreateAnnotationsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c BatchCreateAnnotationsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c BatchCreateAnnotationsRequest)

gmapT :: (forall b. Data b => b -> b) -> BatchCreateAnnotationsRequest -> BatchCreateAnnotationsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> BatchCreateAnnotationsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> BatchCreateAnnotationsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> BatchCreateAnnotationsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> BatchCreateAnnotationsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsRequest -> m BatchCreateAnnotationsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsRequest -> m BatchCreateAnnotationsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsRequest -> m BatchCreateAnnotationsRequest

Show BatchCreateAnnotationsRequest

Methods

showsPrec :: Int -> BatchCreateAnnotationsRequest -> ShowS

show :: BatchCreateAnnotationsRequest -> String

showList :: [BatchCreateAnnotationsRequest] -> ShowS

Generic BatchCreateAnnotationsRequest

Associated Types

type Rep BatchCreateAnnotationsRequest :: * -> *

Methods

from :: BatchCreateAnnotationsRequest -> Rep BatchCreateAnnotationsRequest x

to :: Rep BatchCreateAnnotationsRequest x -> BatchCreateAnnotationsRequest

ToJSON BatchCreateAnnotationsRequest

Methods

toJSON :: BatchCreateAnnotationsRequest -> Value

toEncoding :: BatchCreateAnnotationsRequest -> Encoding

toJSONList :: [BatchCreateAnnotationsRequest] -> Value

toEncodingList :: [BatchCreateAnnotationsRequest] -> Encoding

FromJSON BatchCreateAnnotationsRequest

Methods

parseJSON :: Value -> Parser BatchCreateAnnotationsRequest

parseJSONList :: Value -> Parser [BatchCreateAnnotationsRequest]

type Rep BatchCreateAnnotationsRequest

type Rep BatchCreateAnnotationsRequest = D1 (MetaData "BatchCreateAnnotationsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "BatchCreateAnnotationsRequest'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_bcarAnnotations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Annotation]))) (S1 (MetaSel (Just Symbol "_bcarRequestId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

batchCreateAnnotationsRequest :: BatchCreateAnnotationsRequest

Creates a value of BatchCreateAnnotationsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• bcarAnnotations
• bcarRequestId

bcarAnnotations :: Lens' BatchCreateAnnotationsRequest [Annotation]

The annotations to be created. At most 4096 can be specified in a single request.

bcarRequestId :: Lens' BatchCreateAnnotationsRequest (Maybe Text)

A unique request ID which enables the server to detect duplicated requests. If provided, duplicated requests will result in the same response; if not provided, duplicated requests may result in duplicated data. For a given annotation set, callers should not reuse `request_id`s when writing different batches of annotations - behavior in this case is undefined. A common approach is to use a UUID. For batch jobs where worker crashes are a possibility, consider using some unique variant of a worker or run ID.

MergeVariantsRequest

data MergeVariantsRequest

Instances

Eq MergeVariantsRequest

Methods

(==) :: MergeVariantsRequest -> MergeVariantsRequest -> Bool

(/=) :: MergeVariantsRequest -> MergeVariantsRequest -> Bool

Data MergeVariantsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> MergeVariantsRequest -> c MergeVariantsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c MergeVariantsRequest

toConstr :: MergeVariantsRequest -> Constr

dataTypeOf :: MergeVariantsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c MergeVariantsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c MergeVariantsRequest)

gmapT :: (forall b. Data b => b -> b) -> MergeVariantsRequest -> MergeVariantsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> MergeVariantsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> MergeVariantsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> MergeVariantsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> MergeVariantsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> MergeVariantsRequest -> m MergeVariantsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> MergeVariantsRequest -> m MergeVariantsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> MergeVariantsRequest -> m MergeVariantsRequest

Show MergeVariantsRequest

Methods

showsPrec :: Int -> MergeVariantsRequest -> ShowS

show :: MergeVariantsRequest -> String

showList :: [MergeVariantsRequest] -> ShowS

Generic MergeVariantsRequest

Associated Types

type Rep MergeVariantsRequest :: * -> *

Methods

from :: MergeVariantsRequest -> Rep MergeVariantsRequest x

to :: Rep MergeVariantsRequest x -> MergeVariantsRequest

ToJSON MergeVariantsRequest

Methods

toJSON :: MergeVariantsRequest -> Value

toEncoding :: MergeVariantsRequest -> Encoding

toJSONList :: [MergeVariantsRequest] -> Value

toEncodingList :: [MergeVariantsRequest] -> Encoding

FromJSON MergeVariantsRequest

Methods

parseJSON :: Value -> Parser MergeVariantsRequest

parseJSONList :: Value -> Parser [MergeVariantsRequest]

type Rep MergeVariantsRequest

type Rep MergeVariantsRequest = D1 (MetaData "MergeVariantsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "MergeVariantsRequest'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_mvrVariants") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Variant]))) ((:*:) (S1 (MetaSel (Just Symbol "_mvrVariantSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_mvrInfoMergeConfig") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe MergeVariantsRequestInfoMergeConfig))))))

mergeVariantsRequest :: MergeVariantsRequest

Creates a value of MergeVariantsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• mvrVariants
• mvrVariantSetId
• mvrInfoMergeConfig

mvrVariants :: Lens' MergeVariantsRequest [Variant]

The variants to be merged with existing variants.

mvrVariantSetId :: Lens' MergeVariantsRequest (Maybe Text)

The destination variant set.

mvrInfoMergeConfig :: Lens' MergeVariantsRequest (Maybe MergeVariantsRequestInfoMergeConfig)

A mapping between info field keys and the InfoMergeOperations to be performed on them.

ReadGroup

data ReadGroup

A read group is all the data that's processed the same way by the sequencer.

See: readGroup smart constructor.

Instances

Eq ReadGroup

Methods

(==) :: ReadGroup -> ReadGroup -> Bool

(/=) :: ReadGroup -> ReadGroup -> Bool

Data ReadGroup

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReadGroup -> c ReadGroup

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReadGroup

toConstr :: ReadGroup -> Constr

dataTypeOf :: ReadGroup -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ReadGroup)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReadGroup)

gmapT :: (forall b. Data b => b -> b) -> ReadGroup -> ReadGroup

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroup -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroup -> r

gmapQ :: (forall d. Data d => d -> u) -> ReadGroup -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ReadGroup -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReadGroup -> m ReadGroup

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroup -> m ReadGroup

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroup -> m ReadGroup

Show ReadGroup

Methods

showsPrec :: Int -> ReadGroup -> ShowS

show :: ReadGroup -> String

showList :: [ReadGroup] -> ShowS

Generic ReadGroup

Associated Types

type Rep ReadGroup :: * -> *

Methods

from :: ReadGroup -> Rep ReadGroup x

to :: Rep ReadGroup x -> ReadGroup

ToJSON ReadGroup

Methods

toJSON :: ReadGroup -> Value

toEncoding :: ReadGroup -> Encoding

toJSONList :: [ReadGroup] -> Value

toEncodingList :: [ReadGroup] -> Encoding

FromJSON ReadGroup

Methods

parseJSON :: Value -> Parser ReadGroup

parseJSONList :: Value -> Parser [ReadGroup]

type Rep ReadGroup

type Rep ReadGroup = D1 (MetaData "ReadGroup" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ReadGroup'" PrefixI True) ((:*:) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_reaReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_reaPrograms") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Program])))) ((:*:) (S1 (MetaSel (Just Symbol "_reaExperiment") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Experiment))) ((:*:) (S1 (MetaSel (Just Symbol "_reaName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_reaDataSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_reaId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_reaSampleId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_reaPredictedInsertSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) ((:*:) (S1 (MetaSel (Just Symbol "_reaDescription") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_reaInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ReadGroupInfo))))))))

readGroup :: ReadGroup

Creates a value of ReadGroup with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• reaReferenceSetId
• reaPrograms
• reaExperiment
• reaName
• reaDataSetId
• reaId
• reaSampleId
• reaPredictedInsertSize
• reaDescription
• reaInfo

reaReferenceSetId :: Lens' ReadGroup (Maybe Text)

The reference set the reads in this read group are aligned to.

reaPrograms :: Lens' ReadGroup [Program]

The programs used to generate this read group. Programs are always identical for all read groups within a read group set. For this reason, only the first read group in a returned set will have this field populated.

reaExperiment :: Lens' ReadGroup (Maybe Experiment)

The experiment used to generate this read group.

reaName :: Lens' ReadGroup (Maybe Text)

The read group name. This corresponds to the 'RG ID field in the SAM spec.

reaDataSetId :: Lens' ReadGroup (Maybe Text)

The dataset to which this read group belongs.

reaId :: Lens' ReadGroup (Maybe Text)

The server-generated read group ID, unique for all read groups. Note: This is different than the 'RG ID field in the SAM spec. For that value, see name.

reaSampleId :: Lens' ReadGroup (Maybe Text)

A client-supplied sample identifier for the reads in this read group.

reaPredictedInsertSize :: Lens' ReadGroup (Maybe Int32)

The predicted insert size of this read group. The insert size is the length the sequenced DNA fragment from end-to-end, not including the adapters.

reaDescription :: Lens' ReadGroup (Maybe Text)

A free-form text description of this read group.

reaInfo :: Lens' ReadGroup (Maybe ReadGroupInfo)

A map of additional read group information. This must be of the form map (string key mapping to a list of string values).

Operation

data Operation

This resource represents a long-running operation that is the result of a network API call.

See: operation smart constructor.

Instances

Eq Operation

Methods

(==) :: Operation -> Operation -> Bool

(/=) :: Operation -> Operation -> Bool

Data Operation

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Operation -> c Operation

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Operation

toConstr :: Operation -> Constr

dataTypeOf :: Operation -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Operation)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Operation)

gmapT :: (forall b. Data b => b -> b) -> Operation -> Operation

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Operation -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Operation -> r

gmapQ :: (forall d. Data d => d -> u) -> Operation -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Operation -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Operation -> m Operation

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Operation -> m Operation

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Operation -> m Operation

Show Operation

Methods

showsPrec :: Int -> Operation -> ShowS

show :: Operation -> String

showList :: [Operation] -> ShowS

Generic Operation

Associated Types

type Rep Operation :: * -> *

Methods

from :: Operation -> Rep Operation x

to :: Rep Operation x -> Operation

ToJSON Operation

Methods

toJSON :: Operation -> Value

toEncoding :: Operation -> Encoding

toJSONList :: [Operation] -> Value

toEncodingList :: [Operation] -> Encoding

FromJSON Operation

Methods

parseJSON :: Value -> Parser Operation

parseJSONList :: Value -> Parser [Operation]

type Rep Operation

type Rep Operation = D1 (MetaData "Operation" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Operation'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_oDone") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))) (S1 (MetaSel (Just Symbol "_oError") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Status)))) ((:*:) (S1 (MetaSel (Just Symbol "_oResponse") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe OperationResponse))) ((:*:) (S1 (MetaSel (Just Symbol "_oName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_oMetadata") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe OperationSchema)))))))

operation :: Operation

Creates a value of Operation with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• oDone
• oError
• oResponse
• oName
• oMetadata

oDone :: Lens' Operation (Maybe Bool)

If the value is `false`, it means the operation is still in progress. If true, the operation is completed, and either `error` or `response` is available.

oError :: Lens' Operation (Maybe Status)

The error result of the operation in case of failure or cancellation.

oResponse :: Lens' Operation (Maybe OperationResponse)

If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If importing Variants, an ImportVariantsResponse is returned. For pipelines and exports, an empty response is returned.

oName :: Lens' Operation (Maybe Text)

The server-assigned name, which is only unique within the same service that originally returns it. For example: `operations/CJHU7Oi_ChDrveSpBRjfuL-qzoWAgEw`

oMetadata :: Lens' Operation (Maybe OperationSchema)

An OperationMetadata object. This will always be returned with the Operation.

SearchReferenceSetsRequest

data SearchReferenceSetsRequest

Instances

Eq SearchReferenceSetsRequest

Methods

(==) :: SearchReferenceSetsRequest -> SearchReferenceSetsRequest -> Bool

(/=) :: SearchReferenceSetsRequest -> SearchReferenceSetsRequest -> Bool

Data SearchReferenceSetsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReferenceSetsRequest -> c SearchReferenceSetsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReferenceSetsRequest

toConstr :: SearchReferenceSetsRequest -> Constr

dataTypeOf :: SearchReferenceSetsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReferenceSetsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReferenceSetsRequest)

gmapT :: (forall b. Data b => b -> b) -> SearchReferenceSetsRequest -> SearchReferenceSetsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferenceSetsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferenceSetsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchReferenceSetsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReferenceSetsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReferenceSetsRequest -> m SearchReferenceSetsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferenceSetsRequest -> m SearchReferenceSetsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferenceSetsRequest -> m SearchReferenceSetsRequest

Show SearchReferenceSetsRequest

Methods

showsPrec :: Int -> SearchReferenceSetsRequest -> ShowS

show :: SearchReferenceSetsRequest -> String

showList :: [SearchReferenceSetsRequest] -> ShowS

Generic SearchReferenceSetsRequest

Associated Types

type Rep SearchReferenceSetsRequest :: * -> *

Methods

from :: SearchReferenceSetsRequest -> Rep SearchReferenceSetsRequest x

to :: Rep SearchReferenceSetsRequest x -> SearchReferenceSetsRequest

ToJSON SearchReferenceSetsRequest

Methods

toJSON :: SearchReferenceSetsRequest -> Value

toEncoding :: SearchReferenceSetsRequest -> Encoding

toJSONList :: [SearchReferenceSetsRequest] -> Value

toEncodingList :: [SearchReferenceSetsRequest] -> Encoding

FromJSON SearchReferenceSetsRequest

Methods

parseJSON :: Value -> Parser SearchReferenceSetsRequest

parseJSONList :: Value -> Parser [SearchReferenceSetsRequest]

type Rep SearchReferenceSetsRequest

type Rep SearchReferenceSetsRequest = D1 (MetaData "SearchReferenceSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchReferenceSetsRequest'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_srsrMD5checksums") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_srsrAccessions") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((:*:) (S1 (MetaSel (Just Symbol "_srsrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_srsrAssemblyId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_srsrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))))))

searchReferenceSetsRequest :: SearchReferenceSetsRequest

Creates a value of SearchReferenceSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• srsrMD5checksums
• srsrAccessions
• srsrPageToken
• srsrAssemblyId
• srsrPageSize

srsrMD5checksums :: Lens' SearchReferenceSetsRequest [Text]

If present, return reference sets for which the md5checksum matches exactly.

srsrAccessions :: Lens' SearchReferenceSetsRequest [Text]

If present, return reference sets for which a prefix of any of sourceAccessions match any of these strings. Accession numbers typically have a main number and a version, for example `NC_000001.11`.

srsrPageToken :: Lens' SearchReferenceSetsRequest (Maybe Text)

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

srsrAssemblyId :: Lens' SearchReferenceSetsRequest (Maybe Text)

If present, return reference sets for which a substring of their `assemblyId` matches this string (case insensitive).

srsrPageSize :: Lens' SearchReferenceSetsRequest (Maybe Int32)

The maximum number of results to return in a single page. If unspecified, defaults to 1024. The maximum value is 4096.

Empty

data Empty

A generic empty message that you can re-use to avoid defining duplicated empty messages in your APIs. A typical example is to use it as the request or the response type of an API method. For instance: service Foo { rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty); } The JSON representation for `Empty` is empty JSON object `{}`.

See: empty smart constructor.

Instances

Eq Empty

Methods

(==) :: Empty -> Empty -> Bool

(/=) :: Empty -> Empty -> Bool

Data Empty

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Empty -> c Empty

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Empty

toConstr :: Empty -> Constr

dataTypeOf :: Empty -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Empty)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Empty)

gmapT :: (forall b. Data b => b -> b) -> Empty -> Empty

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Empty -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Empty -> r

gmapQ :: (forall d. Data d => d -> u) -> Empty -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Empty -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Empty -> m Empty

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Empty -> m Empty

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Empty -> m Empty

Show Empty

Methods

showsPrec :: Int -> Empty -> ShowS

show :: Empty -> String

showList :: [Empty] -> ShowS

Generic Empty

Associated Types

type Rep Empty :: * -> *

Methods

from :: Empty -> Rep Empty x

to :: Rep Empty x -> Empty

ToJSON Empty

Methods

toJSON :: Empty -> Value

toEncoding :: Empty -> Encoding

toJSONList :: [Empty] -> Value

toEncodingList :: [Empty] -> Encoding

FromJSON Empty

Methods

parseJSON :: Value -> Parser Empty

parseJSONList :: Value -> Parser [Empty]

type Rep Empty

type Rep Empty = D1 (MetaData "Empty" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Empty'" PrefixI False) U1)

empty :: Empty

Creates a value of Empty with the minimum fields required to make a request.

AnnotationSetType

data AnnotationSetType

The type of annotations contained within this set.

Constructors

ASTAnnotationTypeUnspecified

ANNOTATION_TYPE_UNSPECIFIED

ASTGeneric

GENERIC A `GENERIC` annotation type should be used when no other annotation type will suffice. This represents an untyped annotation of the reference genome.

ASTVariant

VARIANT A `VARIANT` annotation type.

ASTGene

GENE A `GENE` annotation type represents the existence of a gene at the associated reference coordinates. The start coordinate is typically the gene's transcription start site and the end is typically the end of the gene's last exon.

ASTTranscript

TRANSCRIPT A `TRANSCRIPT` annotation type represents the assertion that a particular region of the reference genome may be transcribed as RNA.

Instances

Enum AnnotationSetType

Methods

succ :: AnnotationSetType -> AnnotationSetType

pred :: AnnotationSetType -> AnnotationSetType

toEnum :: Int -> AnnotationSetType

fromEnum :: AnnotationSetType -> Int

enumFrom :: AnnotationSetType -> [AnnotationSetType]

enumFromThen :: AnnotationSetType -> AnnotationSetType -> [AnnotationSetType]

enumFromTo :: AnnotationSetType -> AnnotationSetType -> [AnnotationSetType]

enumFromThenTo :: AnnotationSetType -> AnnotationSetType -> AnnotationSetType -> [AnnotationSetType]

Eq AnnotationSetType

Methods

(==) :: AnnotationSetType -> AnnotationSetType -> Bool

(/=) :: AnnotationSetType -> AnnotationSetType -> Bool

Data AnnotationSetType

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> AnnotationSetType -> c AnnotationSetType

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c AnnotationSetType

toConstr :: AnnotationSetType -> Constr

dataTypeOf :: AnnotationSetType -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c AnnotationSetType)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c AnnotationSetType)

gmapT :: (forall b. Data b => b -> b) -> AnnotationSetType -> AnnotationSetType

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSetType -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSetType -> r

gmapQ :: (forall d. Data d => d -> u) -> AnnotationSetType -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> AnnotationSetType -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> AnnotationSetType -> m AnnotationSetType

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSetType -> m AnnotationSetType

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSetType -> m AnnotationSetType

Ord AnnotationSetType

Methods

compare :: AnnotationSetType -> AnnotationSetType -> Ordering

(<) :: AnnotationSetType -> AnnotationSetType -> Bool

(<=) :: AnnotationSetType -> AnnotationSetType -> Bool

(>) :: AnnotationSetType -> AnnotationSetType -> Bool

(>=) :: AnnotationSetType -> AnnotationSetType -> Bool

max :: AnnotationSetType -> AnnotationSetType -> AnnotationSetType

min :: AnnotationSetType -> AnnotationSetType -> AnnotationSetType

Read AnnotationSetType

Methods

readsPrec :: Int -> ReadS AnnotationSetType

readList :: ReadS [AnnotationSetType]

readPrec :: ReadPrec AnnotationSetType

readListPrec :: ReadPrec [AnnotationSetType]

Show AnnotationSetType

Methods

showsPrec :: Int -> AnnotationSetType -> ShowS

show :: AnnotationSetType -> String

showList :: [AnnotationSetType] -> ShowS

Generic AnnotationSetType

Associated Types

type Rep AnnotationSetType :: * -> *

Methods

from :: AnnotationSetType -> Rep AnnotationSetType x

to :: Rep AnnotationSetType x -> AnnotationSetType

Hashable AnnotationSetType

Methods

hashWithSalt :: Int -> AnnotationSetType -> Int

hash :: AnnotationSetType -> Int

ToJSON AnnotationSetType

Methods

toJSON :: AnnotationSetType -> Value

toEncoding :: AnnotationSetType -> Encoding

toJSONList :: [AnnotationSetType] -> Value

toEncodingList :: [AnnotationSetType] -> Encoding

FromJSON AnnotationSetType

Methods

parseJSON :: Value -> Parser AnnotationSetType

parseJSONList :: Value -> Parser [AnnotationSetType]

FromHttpApiData AnnotationSetType

Methods

parseUrlPiece :: Text -> Either Text AnnotationSetType

parseHeader :: ByteString -> Either Text AnnotationSetType

parseQueryParam :: Text -> Either Text AnnotationSetType

ToHttpApiData AnnotationSetType

Methods

toUrlPiece :: AnnotationSetType -> Text

toHeader :: AnnotationSetType -> ByteString

toQueryParam :: AnnotationSetType -> Text

type Rep AnnotationSetType

type Rep AnnotationSetType = D1 (MetaData "AnnotationSetType" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) ((:+:) ((:+:) (C1 (MetaCons "ASTAnnotationTypeUnspecified" PrefixI False) U1) (C1 (MetaCons "ASTGeneric" PrefixI False) U1)) ((:+:) (C1 (MetaCons "ASTVariant" PrefixI False) U1) ((:+:) (C1 (MetaCons "ASTGene" PrefixI False) U1) (C1 (MetaCons "ASTTranscript" PrefixI False) U1))))

SearchReferencesResponse

data SearchReferencesResponse

Instances

Eq SearchReferencesResponse

Methods

(==) :: SearchReferencesResponse -> SearchReferencesResponse -> Bool

(/=) :: SearchReferencesResponse -> SearchReferencesResponse -> Bool

Data SearchReferencesResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReferencesResponse -> c SearchReferencesResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReferencesResponse

toConstr :: SearchReferencesResponse -> Constr

dataTypeOf :: SearchReferencesResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReferencesResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReferencesResponse)

gmapT :: (forall b. Data b => b -> b) -> SearchReferencesResponse -> SearchReferencesResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferencesResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferencesResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchReferencesResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReferencesResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReferencesResponse -> m SearchReferencesResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferencesResponse -> m SearchReferencesResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferencesResponse -> m SearchReferencesResponse

Show SearchReferencesResponse

Methods

showsPrec :: Int -> SearchReferencesResponse -> ShowS

show :: SearchReferencesResponse -> String

showList :: [SearchReferencesResponse] -> ShowS

Generic SearchReferencesResponse

Associated Types

type Rep SearchReferencesResponse :: * -> *

Methods

from :: SearchReferencesResponse -> Rep SearchReferencesResponse x

to :: Rep SearchReferencesResponse x -> SearchReferencesResponse

ToJSON SearchReferencesResponse

Methods

toJSON :: SearchReferencesResponse -> Value

toEncoding :: SearchReferencesResponse -> Encoding

toJSONList :: [SearchReferencesResponse] -> Value

toEncodingList :: [SearchReferencesResponse] -> Encoding

FromJSON SearchReferencesResponse

Methods

parseJSON :: Value -> Parser SearchReferencesResponse

parseJSONList :: Value -> Parser [SearchReferencesResponse]

type Rep SearchReferencesResponse

type Rep SearchReferencesResponse = D1 (MetaData "SearchReferencesResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchReferencesResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_srrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_srrReferences") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Reference])))))

searchReferencesResponse :: SearchReferencesResponse

Creates a value of SearchReferencesResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• srrNextPageToken
• srrReferences

srrNextPageToken :: Lens' SearchReferencesResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

srrReferences :: Lens' SearchReferencesResponse [Reference]

The matching references.

VariantSetMetadata

data VariantSetMetadata

Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.

See: variantSetMetadata smart constructor.

Instances

Eq VariantSetMetadata

Methods

(==) :: VariantSetMetadata -> VariantSetMetadata -> Bool

(/=) :: VariantSetMetadata -> VariantSetMetadata -> Bool

Data VariantSetMetadata

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantSetMetadata -> c VariantSetMetadata

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantSetMetadata

toConstr :: VariantSetMetadata -> Constr

dataTypeOf :: VariantSetMetadata -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantSetMetadata)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantSetMetadata)

gmapT :: (forall b. Data b => b -> b) -> VariantSetMetadata -> VariantSetMetadata

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadata -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadata -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantSetMetadata -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantSetMetadata -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantSetMetadata -> m VariantSetMetadata

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadata -> m VariantSetMetadata

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadata -> m VariantSetMetadata

Show VariantSetMetadata

Methods

showsPrec :: Int -> VariantSetMetadata -> ShowS

show :: VariantSetMetadata -> String

showList :: [VariantSetMetadata] -> ShowS

Generic VariantSetMetadata

Associated Types

type Rep VariantSetMetadata :: * -> *

Methods

from :: VariantSetMetadata -> Rep VariantSetMetadata x

to :: Rep VariantSetMetadata x -> VariantSetMetadata

ToJSON VariantSetMetadata

Methods

toJSON :: VariantSetMetadata -> Value

toEncoding :: VariantSetMetadata -> Encoding

toJSONList :: [VariantSetMetadata] -> Value

toEncodingList :: [VariantSetMetadata] -> Encoding

FromJSON VariantSetMetadata

Methods

parseJSON :: Value -> Parser VariantSetMetadata

parseJSONList :: Value -> Parser [VariantSetMetadata]

type Rep VariantSetMetadata

type Rep VariantSetMetadata = D1 (MetaData "VariantSetMetadata" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "VariantSetMetadata'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_vsmValue") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_vsmKey") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vsmId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_vsmType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantSetMetadataType))) (S1 (MetaSel (Just Symbol "_vsmNumber") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_vsmDescription") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vsmInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantSetMetadataInfo)))))))

variantSetMetadata :: VariantSetMetadata

Creates a value of VariantSetMetadata with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• vsmValue
• vsmKey
• vsmId
• vsmType
• vsmNumber
• vsmDescription
• vsmInfo

vsmValue :: Lens' VariantSetMetadata (Maybe Text)

The value field for simple metadata

vsmKey :: Lens' VariantSetMetadata (Maybe Text)

The top-level key.

vsmId :: Lens' VariantSetMetadata (Maybe Text)

User-provided ID field, not enforced by this API. Two or more pieces of structured metadata with identical id and key fields are considered equivalent.

vsmType :: Lens' VariantSetMetadata (Maybe VariantSetMetadataType)

The type of data. Possible types include: Integer, Float, Flag, Character, and String.

vsmNumber :: Lens' VariantSetMetadata (Maybe Text)

The number of values that can be included in a field described by this metadata.

vsmDescription :: Lens' VariantSetMetadata (Maybe Text)

A textual description of this metadata.

vsmInfo :: Lens' VariantSetMetadata (Maybe VariantSetMetadataInfo)

Remaining structured metadata key-value pairs. This must be of the form map (string key mapping to a list of string values).

CallSet

data CallSet

A call set is a collection of variant calls, typically for one sample. It belongs to a variant set. For more genomics resource definitions, see Fundamentals of Google Genomics

See: callSet smart constructor.

Instances

Eq CallSet

Methods

(==) :: CallSet -> CallSet -> Bool

(/=) :: CallSet -> CallSet -> Bool

Data CallSet

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CallSet -> c CallSet

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CallSet

toConstr :: CallSet -> Constr

dataTypeOf :: CallSet -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c CallSet)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CallSet)

gmapT :: (forall b. Data b => b -> b) -> CallSet -> CallSet

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CallSet -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CallSet -> r

gmapQ :: (forall d. Data d => d -> u) -> CallSet -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> CallSet -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> CallSet -> m CallSet

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CallSet -> m CallSet

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CallSet -> m CallSet

Show CallSet

Methods

showsPrec :: Int -> CallSet -> ShowS

show :: CallSet -> String

showList :: [CallSet] -> ShowS

Generic CallSet

Associated Types

type Rep CallSet :: * -> *

Methods

from :: CallSet -> Rep CallSet x

to :: Rep CallSet x -> CallSet

ToJSON CallSet

Methods

toJSON :: CallSet -> Value

toEncoding :: CallSet -> Encoding

toJSONList :: [CallSet] -> Value

toEncodingList :: [CallSet] -> Encoding

FromJSON CallSet

Methods

parseJSON :: Value -> Parser CallSet

parseJSONList :: Value -> Parser [CallSet]

type Rep CallSet

type Rep CallSet = D1 (MetaData "CallSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "CallSet'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_csCreated") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((:*:) (S1 (MetaSel (Just Symbol "_csName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_csId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) (S1 (MetaSel (Just Symbol "_csSampleId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_csVariantSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_csInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe CallSetInfo)))))))

callSet :: CallSet

Creates a value of CallSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• csCreated
• csName
• csId
• csSampleId
• csVariantSetIds
• csInfo

csCreated :: Lens' CallSet (Maybe Int64)

The date this call set was created in milliseconds from the epoch.

csName :: Lens' CallSet (Maybe Text)

The call set name.

csId :: Lens' CallSet (Maybe Text)

The server-generated call set ID, unique across all call sets.

csSampleId :: Lens' CallSet (Maybe Text)

The sample ID this call set corresponds to.

csVariantSetIds :: Lens' CallSet [Text]

The IDs of the variant sets this call set belongs to. This field must have exactly length one, as a call set belongs to a single variant set. This field is repeated for compatibility with the GA4GH 0.5.1 API.

csInfo :: Lens' CallSet (Maybe CallSetInfo)

A map of additional call set information. This must be of the form map (string key mapping to a list of string values).

CoverageBucket

data CoverageBucket

A bucket over which read coverage has been precomputed. A bucket corresponds to a specific range of the reference sequence.

See: coverageBucket smart constructor.

Instances

Eq CoverageBucket

Methods

(==) :: CoverageBucket -> CoverageBucket -> Bool

(/=) :: CoverageBucket -> CoverageBucket -> Bool

Data CoverageBucket

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CoverageBucket -> c CoverageBucket

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CoverageBucket

toConstr :: CoverageBucket -> Constr

dataTypeOf :: CoverageBucket -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c CoverageBucket)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CoverageBucket)

gmapT :: (forall b. Data b => b -> b) -> CoverageBucket -> CoverageBucket

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CoverageBucket -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CoverageBucket -> r

gmapQ :: (forall d. Data d => d -> u) -> CoverageBucket -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> CoverageBucket -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> CoverageBucket -> m CoverageBucket

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CoverageBucket -> m CoverageBucket

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CoverageBucket -> m CoverageBucket

Show CoverageBucket

Methods

showsPrec :: Int -> CoverageBucket -> ShowS

show :: CoverageBucket -> String

showList :: [CoverageBucket] -> ShowS

Generic CoverageBucket

Associated Types

type Rep CoverageBucket :: * -> *

Methods

from :: CoverageBucket -> Rep CoverageBucket x

to :: Rep CoverageBucket x -> CoverageBucket

ToJSON CoverageBucket

Methods

toJSON :: CoverageBucket -> Value

toEncoding :: CoverageBucket -> Encoding

toJSONList :: [CoverageBucket] -> Value

toEncodingList :: [CoverageBucket] -> Encoding

FromJSON CoverageBucket

Methods

parseJSON :: Value -> Parser CoverageBucket

parseJSONList :: Value -> Parser [CoverageBucket]

type Rep CoverageBucket

type Rep CoverageBucket = D1 (MetaData "CoverageBucket" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "CoverageBucket'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_cbRange") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Range))) (S1 (MetaSel (Just Symbol "_cbMeanCoverage") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Double))))))

coverageBucket :: CoverageBucket

Creates a value of CoverageBucket with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• cbRange
• cbMeanCoverage

cbRange :: Lens' CoverageBucket (Maybe Range)

The genomic coordinate range spanned by this bucket.

cbMeanCoverage :: Lens' CoverageBucket (Maybe Double)

The average number of reads which are aligned to each individual reference base in this bucket.

VariantAnnotation

data VariantAnnotation

Instances

Eq VariantAnnotation

Methods

(==) :: VariantAnnotation -> VariantAnnotation -> Bool

(/=) :: VariantAnnotation -> VariantAnnotation -> Bool

Data VariantAnnotation

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantAnnotation -> c VariantAnnotation

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantAnnotation

toConstr :: VariantAnnotation -> Constr

dataTypeOf :: VariantAnnotation -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantAnnotation)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantAnnotation)

gmapT :: (forall b. Data b => b -> b) -> VariantAnnotation -> VariantAnnotation

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotation -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotation -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantAnnotation -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantAnnotation -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantAnnotation -> m VariantAnnotation

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotation -> m VariantAnnotation

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotation -> m VariantAnnotation

Show VariantAnnotation

Methods

showsPrec :: Int -> VariantAnnotation -> ShowS

show :: VariantAnnotation -> String

showList :: [VariantAnnotation] -> ShowS

Generic VariantAnnotation

Associated Types

type Rep VariantAnnotation :: * -> *

Methods

from :: VariantAnnotation -> Rep VariantAnnotation x

to :: Rep VariantAnnotation x -> VariantAnnotation

ToJSON VariantAnnotation

Methods

toJSON :: VariantAnnotation -> Value

toEncoding :: VariantAnnotation -> Encoding

toJSONList :: [VariantAnnotation] -> Value

toEncodingList :: [VariantAnnotation] -> Encoding

FromJSON VariantAnnotation

Methods

parseJSON :: Value -> Parser VariantAnnotation

parseJSONList :: Value -> Parser [VariantAnnotation]

type Rep VariantAnnotation

type Rep VariantAnnotation = D1 (MetaData "VariantAnnotation" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "VariantAnnotation'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_vaEffect") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantAnnotationEffect))) ((:*:) (S1 (MetaSel (Just Symbol "_vaClinicalSignificance") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantAnnotationClinicalSignificance))) (S1 (MetaSel (Just Symbol "_vaAlternateBases") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_vaGeneId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vaConditions") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ClinicalCondition])))) ((:*:) (S1 (MetaSel (Just Symbol "_vaType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantAnnotationType))) (S1 (MetaSel (Just Symbol "_vaTranscriptIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))))))

variantAnnotation :: VariantAnnotation

Creates a value of VariantAnnotation with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• vaEffect
• vaClinicalSignificance
• vaAlternateBases
• vaGeneId
• vaConditions
• vaType
• vaTranscriptIds

vaEffect :: Lens' VariantAnnotation (Maybe VariantAnnotationEffect)

Effect of the variant on the coding sequence.

vaClinicalSignificance :: Lens' VariantAnnotation (Maybe VariantAnnotationClinicalSignificance)

Describes the clinical significance of a variant. It is adapted from the ClinVar controlled vocabulary for clinical significance described at: http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/

vaAlternateBases :: Lens' VariantAnnotation (Maybe Text)

The alternate allele for this variant. If multiple alternate alleles exist at this location, create a separate variant for each one, as they may represent distinct conditions.

vaGeneId :: Lens' VariantAnnotation (Maybe Text)

Google annotation ID of the gene affected by this variant. This should be provided when the variant is created.

vaConditions :: Lens' VariantAnnotation [ClinicalCondition]

The set of conditions associated with this variant. A condition describes the way a variant influences human health.

vaType :: Lens' VariantAnnotation (Maybe VariantAnnotationType)

Type has been adapted from ClinVar's list of variant types.

vaTranscriptIds :: Lens' VariantAnnotation [Text]

Google annotation IDs of the transcripts affected by this variant. These should be provided when the variant is created.

VariantAnnotationClinicalSignificance

data VariantAnnotationClinicalSignificance

Describes the clinical significance of a variant. It is adapted from the ClinVar controlled vocabulary for clinical significance described at: http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/

Constructors

ClinicalSignificanceUnspecified

CLINICAL_SIGNIFICANCE_UNSPECIFIED

ClinicalSignificanceOther

CLINICAL_SIGNIFICANCE_OTHER `OTHER` should be used when no other clinical significance value will suffice.

Uncertain

UNCERTAIN

Benign

BENIGN

LikelyBenign

LIKELY_BENIGN

LikelyPathogenic

LIKELY_PATHOGENIC

Pathogenic

PATHOGENIC

DrugResponse

DRUG_RESPONSE

Histocompatibility

HISTOCOMPATIBILITY

ConfersSensitivity

CONFERS_SENSITIVITY

RiskFactor

RISK_FACTOR

Association

ASSOCIATION

Protective

PROTECTIVE

MultipleReported

MULTIPLE_REPORTED `MULTIPLE_REPORTED` should be used when multiple clinical signficances are reported for a variant. The original clinical significance values may be provided in the `info` field.

Instances

Enum VariantAnnotationClinicalSignificance

Methods

succ :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance

pred :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance

toEnum :: Int -> VariantAnnotationClinicalSignificance

fromEnum :: VariantAnnotationClinicalSignificance -> Int

enumFrom :: VariantAnnotationClinicalSignificance -> [VariantAnnotationClinicalSignificance]

enumFromThen :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> [VariantAnnotationClinicalSignificance]

enumFromTo :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> [VariantAnnotationClinicalSignificance]

enumFromThenTo :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> [VariantAnnotationClinicalSignificance]

Eq VariantAnnotationClinicalSignificance

Methods

(==) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool

(/=) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool

Data VariantAnnotationClinicalSignificance

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantAnnotationClinicalSignificance -> c VariantAnnotationClinicalSignificance

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantAnnotationClinicalSignificance

toConstr :: VariantAnnotationClinicalSignificance -> Constr

dataTypeOf :: VariantAnnotationClinicalSignificance -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantAnnotationClinicalSignificance)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantAnnotationClinicalSignificance)

gmapT :: (forall b. Data b => b -> b) -> VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationClinicalSignificance -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationClinicalSignificance -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantAnnotationClinicalSignificance -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantAnnotationClinicalSignificance -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantAnnotationClinicalSignificance -> m VariantAnnotationClinicalSignificance

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationClinicalSignificance -> m VariantAnnotationClinicalSignificance

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationClinicalSignificance -> m VariantAnnotationClinicalSignificance

Ord VariantAnnotationClinicalSignificance

Methods

compare :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Ordering

(<) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool

(<=) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool

(>) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool

(>=) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool

max :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance

min :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance

Read VariantAnnotationClinicalSignificance

Methods

readsPrec :: Int -> ReadS VariantAnnotationClinicalSignificance

readList :: ReadS [VariantAnnotationClinicalSignificance]

readPrec :: ReadPrec VariantAnnotationClinicalSignificance

readListPrec :: ReadPrec [VariantAnnotationClinicalSignificance]

Show VariantAnnotationClinicalSignificance

Methods

showsPrec :: Int -> VariantAnnotationClinicalSignificance -> ShowS

show :: VariantAnnotationClinicalSignificance -> String

showList :: [VariantAnnotationClinicalSignificance] -> ShowS

Generic VariantAnnotationClinicalSignificance

Associated Types

type Rep VariantAnnotationClinicalSignificance :: * -> *

Methods

from :: VariantAnnotationClinicalSignificance -> Rep VariantAnnotationClinicalSignificance x

to :: Rep VariantAnnotationClinicalSignificance x -> VariantAnnotationClinicalSignificance

Hashable VariantAnnotationClinicalSignificance

Methods

hashWithSalt :: Int -> VariantAnnotationClinicalSignificance -> Int

hash :: VariantAnnotationClinicalSignificance -> Int

ToJSON VariantAnnotationClinicalSignificance

Methods

toJSON :: VariantAnnotationClinicalSignificance -> Value

toEncoding :: VariantAnnotationClinicalSignificance -> Encoding

toJSONList :: [VariantAnnotationClinicalSignificance] -> Value

toEncodingList :: [VariantAnnotationClinicalSignificance] -> Encoding

FromJSON VariantAnnotationClinicalSignificance

Methods

parseJSON :: Value -> Parser VariantAnnotationClinicalSignificance

parseJSONList :: Value -> Parser [VariantAnnotationClinicalSignificance]

FromHttpApiData VariantAnnotationClinicalSignificance

Methods

parseUrlPiece :: Text -> Either Text VariantAnnotationClinicalSignificance

parseHeader :: ByteString -> Either Text VariantAnnotationClinicalSignificance

parseQueryParam :: Text -> Either Text VariantAnnotationClinicalSignificance

ToHttpApiData VariantAnnotationClinicalSignificance

Methods

toUrlPiece :: VariantAnnotationClinicalSignificance -> Text

toHeader :: VariantAnnotationClinicalSignificance -> ByteString

toQueryParam :: VariantAnnotationClinicalSignificance -> Text

type Rep VariantAnnotationClinicalSignificance

type Rep VariantAnnotationClinicalSignificance = D1 (MetaData "VariantAnnotationClinicalSignificance" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) ((:+:) ((:+:) ((:+:) (C1 (MetaCons "ClinicalSignificanceUnspecified" PrefixI False) U1) ((:+:) (C1 (MetaCons "ClinicalSignificanceOther" PrefixI False) U1) (C1 (MetaCons "Uncertain" PrefixI False) U1))) ((:+:) ((:+:) (C1 (MetaCons "Benign" PrefixI False) U1) (C1 (MetaCons "LikelyBenign" PrefixI False) U1)) ((:+:) (C1 (MetaCons "LikelyPathogenic" PrefixI False) U1) (C1 (MetaCons "Pathogenic" PrefixI False) U1)))) ((:+:) ((:+:) (C1 (MetaCons "DrugResponse" PrefixI False) U1) ((:+:) (C1 (MetaCons "Histocompatibility" PrefixI False) U1) (C1 (MetaCons "ConfersSensitivity" PrefixI False) U1))) ((:+:) ((:+:) (C1 (MetaCons "RiskFactor" PrefixI False) U1) (C1 (MetaCons "Association" PrefixI False) U1)) ((:+:) (C1 (MetaCons "Protective" PrefixI False) U1) (C1 (MetaCons "MultipleReported" PrefixI False) U1)))))

SearchReadGroupSetsRequest

data SearchReadGroupSetsRequest

The read group set search request.

See: searchReadGroupSetsRequest smart constructor.

Instances

Eq SearchReadGroupSetsRequest

Methods

(==) :: SearchReadGroupSetsRequest -> SearchReadGroupSetsRequest -> Bool

(/=) :: SearchReadGroupSetsRequest -> SearchReadGroupSetsRequest -> Bool

Data SearchReadGroupSetsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReadGroupSetsRequest -> c SearchReadGroupSetsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReadGroupSetsRequest

toConstr :: SearchReadGroupSetsRequest -> Constr

dataTypeOf :: SearchReadGroupSetsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReadGroupSetsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReadGroupSetsRequest)

gmapT :: (forall b. Data b => b -> b) -> SearchReadGroupSetsRequest -> SearchReadGroupSetsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadGroupSetsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadGroupSetsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchReadGroupSetsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReadGroupSetsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsRequest -> m SearchReadGroupSetsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsRequest -> m SearchReadGroupSetsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsRequest -> m SearchReadGroupSetsRequest

Show SearchReadGroupSetsRequest

Methods

showsPrec :: Int -> SearchReadGroupSetsRequest -> ShowS

show :: SearchReadGroupSetsRequest -> String

showList :: [SearchReadGroupSetsRequest] -> ShowS

Generic SearchReadGroupSetsRequest

Associated Types

type Rep SearchReadGroupSetsRequest :: * -> *

Methods

from :: SearchReadGroupSetsRequest -> Rep SearchReadGroupSetsRequest x

to :: Rep SearchReadGroupSetsRequest x -> SearchReadGroupSetsRequest

ToJSON SearchReadGroupSetsRequest

Methods

toJSON :: SearchReadGroupSetsRequest -> Value

toEncoding :: SearchReadGroupSetsRequest -> Encoding

toJSONList :: [SearchReadGroupSetsRequest] -> Value

toEncodingList :: [SearchReadGroupSetsRequest] -> Encoding

FromJSON SearchReadGroupSetsRequest

Methods

parseJSON :: Value -> Parser SearchReadGroupSetsRequest

parseJSONList :: Value -> Parser [SearchReadGroupSetsRequest]

type Rep SearchReadGroupSetsRequest

type Rep SearchReadGroupSetsRequest = D1 (MetaData "SearchReadGroupSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchReadGroupSetsRequest'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_srgsrDataSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_srgsrName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_srgsrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_srgsrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))))

searchReadGroupSetsRequest :: SearchReadGroupSetsRequest

Creates a value of SearchReadGroupSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• srgsrDataSetIds
• srgsrName
• srgsrPageToken
• srgsrPageSize

srgsrDataSetIds :: Lens' SearchReadGroupSetsRequest [Text]

Restricts this query to read group sets within the given datasets. At least one ID must be provided.

srgsrName :: Lens' SearchReadGroupSetsRequest (Maybe Text)

Only return read group sets for which a substring of the name matches this string.

srgsrPageToken :: Lens' SearchReadGroupSetsRequest (Maybe Text)

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

srgsrPageSize :: Lens' SearchReadGroupSetsRequest (Maybe Int32)

The maximum number of results to return in a single page. If unspecified, defaults to 256. The maximum value is 1024.

Reference

data Reference

A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets. For more genomics resource definitions, see Fundamentals of Google Genomics

See: reference smart constructor.

Instances

Eq Reference

Methods

(==) :: Reference -> Reference -> Bool

(/=) :: Reference -> Reference -> Bool

Data Reference

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Reference -> c Reference

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Reference

toConstr :: Reference -> Constr

dataTypeOf :: Reference -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Reference)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Reference)

gmapT :: (forall b. Data b => b -> b) -> Reference -> Reference

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Reference -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Reference -> r

gmapQ :: (forall d. Data d => d -> u) -> Reference -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Reference -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Reference -> m Reference

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Reference -> m Reference

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Reference -> m Reference

Show Reference

Methods

showsPrec :: Int -> Reference -> ShowS

show :: Reference -> String

showList :: [Reference] -> ShowS

Generic Reference

Associated Types

type Rep Reference :: * -> *

Methods

from :: Reference -> Rep Reference x

to :: Rep Reference x -> Reference

ToJSON Reference

Methods

toJSON :: Reference -> Value

toEncoding :: Reference -> Encoding

toJSONList :: [Reference] -> Value

toEncodingList :: [Reference] -> Encoding

FromJSON Reference

Methods

parseJSON :: Value -> Parser Reference

parseJSONList :: Value -> Parser [Reference]

type Rep Reference

type Rep Reference = D1 (MetaData "Reference" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Reference'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_refLength") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((:*:) (S1 (MetaSel (Just Symbol "_refSourceAccessions") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_refMD5checksum") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_refName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_refNcbiTaxonId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))) ((:*:) (S1 (MetaSel (Just Symbol "_refId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_refSourceURI") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

reference :: Reference

Creates a value of Reference with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• refLength
• refSourceAccessions
• refMD5checksum
• refName
• refNcbiTaxonId
• refId
• refSourceURI

refLength :: Lens' Reference (Maybe Int64)

The length of this reference's sequence.

refSourceAccessions :: Lens' Reference [Text]

All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `GCF_000001405.26`.

refMD5checksum :: Lens' Reference (Maybe Text)

MD5 of the upper-case sequence excluding all whitespace characters (this is equivalent to SQ:M5 in SAM). This value is represented in lower case hexadecimal format.

refName :: Lens' Reference (Maybe Text)

The name of this reference, for example `22`.

refNcbiTaxonId :: Lens' Reference (Maybe Int32)

ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.

refId :: Lens' Reference (Maybe Text)

The server-generated reference ID, unique across all references.

refSourceURI :: Lens' Reference (Maybe Text)

The URI from which the sequence was obtained. Typically specifies a FASTA format file.

VariantCallInfo

data VariantCallInfo

A map of additional variant call information. This must be of the form map (string key mapping to a list of string values).

See: variantCallInfo smart constructor.

Instances

Eq VariantCallInfo

Methods

(==) :: VariantCallInfo -> VariantCallInfo -> Bool

(/=) :: VariantCallInfo -> VariantCallInfo -> Bool

Data VariantCallInfo

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantCallInfo -> c VariantCallInfo

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantCallInfo

toConstr :: VariantCallInfo -> Constr

dataTypeOf :: VariantCallInfo -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantCallInfo)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantCallInfo)

gmapT :: (forall b. Data b => b -> b) -> VariantCallInfo -> VariantCallInfo

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantCallInfo -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantCallInfo -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantCallInfo -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantCallInfo -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantCallInfo -> m VariantCallInfo

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantCallInfo -> m VariantCallInfo

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantCallInfo -> m VariantCallInfo

Show VariantCallInfo

Methods

showsPrec :: Int -> VariantCallInfo -> ShowS

show :: VariantCallInfo -> String

showList :: [VariantCallInfo] -> ShowS

Generic VariantCallInfo

Associated Types

type Rep VariantCallInfo :: * -> *

Methods

from :: VariantCallInfo -> Rep VariantCallInfo x

to :: Rep VariantCallInfo x -> VariantCallInfo

ToJSON VariantCallInfo

Methods

toJSON :: VariantCallInfo -> Value

toEncoding :: VariantCallInfo -> Encoding

toJSONList :: [VariantCallInfo] -> Value

toEncodingList :: [VariantCallInfo] -> Encoding

FromJSON VariantCallInfo

Methods

parseJSON :: Value -> Parser VariantCallInfo

parseJSONList :: Value -> Parser [VariantCallInfo]

type Rep VariantCallInfo

type Rep VariantCallInfo = D1 (MetaData "VariantCallInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "VariantCallInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_vciAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

variantCallInfo

Arguments

:: HashMap Text [JSONValue]

vciAddtional

-> VariantCallInfo

Creates a value of VariantCallInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• vciAddtional

vciAddtional :: Lens' VariantCallInfo (HashMap Text [JSONValue])

ReadGroupInfo

data ReadGroupInfo

A map of additional read group information. This must be of the form map (string key mapping to a list of string values).

See: readGroupInfo smart constructor.

Instances

Eq ReadGroupInfo

Methods

(==) :: ReadGroupInfo -> ReadGroupInfo -> Bool

(/=) :: ReadGroupInfo -> ReadGroupInfo -> Bool

Data ReadGroupInfo

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReadGroupInfo -> c ReadGroupInfo

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReadGroupInfo

toConstr :: ReadGroupInfo -> Constr

dataTypeOf :: ReadGroupInfo -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ReadGroupInfo)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReadGroupInfo)

gmapT :: (forall b. Data b => b -> b) -> ReadGroupInfo -> ReadGroupInfo

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupInfo -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupInfo -> r

gmapQ :: (forall d. Data d => d -> u) -> ReadGroupInfo -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ReadGroupInfo -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReadGroupInfo -> m ReadGroupInfo

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupInfo -> m ReadGroupInfo

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupInfo -> m ReadGroupInfo

Show ReadGroupInfo

Methods

showsPrec :: Int -> ReadGroupInfo -> ShowS

show :: ReadGroupInfo -> String

showList :: [ReadGroupInfo] -> ShowS

Generic ReadGroupInfo

Associated Types

type Rep ReadGroupInfo :: * -> *

Methods

from :: ReadGroupInfo -> Rep ReadGroupInfo x

to :: Rep ReadGroupInfo x -> ReadGroupInfo

ToJSON ReadGroupInfo

Methods

toJSON :: ReadGroupInfo -> Value

toEncoding :: ReadGroupInfo -> Encoding

toJSONList :: [ReadGroupInfo] -> Value

toEncodingList :: [ReadGroupInfo] -> Encoding

FromJSON ReadGroupInfo

Methods

parseJSON :: Value -> Parser ReadGroupInfo

parseJSONList :: Value -> Parser [ReadGroupInfo]

type Rep ReadGroupInfo

type Rep ReadGroupInfo = D1 (MetaData "ReadGroupInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "ReadGroupInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_rgiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

readGroupInfo

Arguments

:: HashMap Text [JSONValue]

rgiAddtional

-> ReadGroupInfo

Creates a value of ReadGroupInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• rgiAddtional

rgiAddtional :: Lens' ReadGroupInfo (HashMap Text [JSONValue])

StatusDetailsItem

data StatusDetailsItem

Instances

Eq StatusDetailsItem

Methods

(==) :: StatusDetailsItem -> StatusDetailsItem -> Bool

(/=) :: StatusDetailsItem -> StatusDetailsItem -> Bool

Data StatusDetailsItem

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> StatusDetailsItem -> c StatusDetailsItem

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c StatusDetailsItem

toConstr :: StatusDetailsItem -> Constr

dataTypeOf :: StatusDetailsItem -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c StatusDetailsItem)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c StatusDetailsItem)

gmapT :: (forall b. Data b => b -> b) -> StatusDetailsItem -> StatusDetailsItem

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> StatusDetailsItem -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> StatusDetailsItem -> r

gmapQ :: (forall d. Data d => d -> u) -> StatusDetailsItem -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> StatusDetailsItem -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> StatusDetailsItem -> m StatusDetailsItem

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> StatusDetailsItem -> m StatusDetailsItem

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> StatusDetailsItem -> m StatusDetailsItem

Show StatusDetailsItem

Methods

showsPrec :: Int -> StatusDetailsItem -> ShowS

show :: StatusDetailsItem -> String

showList :: [StatusDetailsItem] -> ShowS

Generic StatusDetailsItem

Associated Types

type Rep StatusDetailsItem :: * -> *

Methods

from :: StatusDetailsItem -> Rep StatusDetailsItem x

to :: Rep StatusDetailsItem x -> StatusDetailsItem

ToJSON StatusDetailsItem

Methods

toJSON :: StatusDetailsItem -> Value

toEncoding :: StatusDetailsItem -> Encoding

toJSONList :: [StatusDetailsItem] -> Value

toEncodingList :: [StatusDetailsItem] -> Encoding

FromJSON StatusDetailsItem

Methods

parseJSON :: Value -> Parser StatusDetailsItem

parseJSONList :: Value -> Parser [StatusDetailsItem]

type Rep StatusDetailsItem

type Rep StatusDetailsItem = D1 (MetaData "StatusDetailsItem" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "StatusDetailsItem'" PrefixI True) (S1 (MetaSel (Just Symbol "_sdiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text JSONValue))))

statusDetailsItem

Arguments

:: HashMap Text JSONValue

sdiAddtional

-> StatusDetailsItem

Creates a value of StatusDetailsItem with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• sdiAddtional

sdiAddtional :: Lens' StatusDetailsItem (HashMap Text JSONValue)

Properties of the object. Contains field 'type with type URL.

SearchCallSetsResponse

data SearchCallSetsResponse

The call set search response.

See: searchCallSetsResponse smart constructor.

Instances

Eq SearchCallSetsResponse

Methods

(==) :: SearchCallSetsResponse -> SearchCallSetsResponse -> Bool

(/=) :: SearchCallSetsResponse -> SearchCallSetsResponse -> Bool

Data SearchCallSetsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchCallSetsResponse -> c SearchCallSetsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchCallSetsResponse

toConstr :: SearchCallSetsResponse -> Constr

dataTypeOf :: SearchCallSetsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchCallSetsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchCallSetsResponse)

gmapT :: (forall b. Data b => b -> b) -> SearchCallSetsResponse -> SearchCallSetsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchCallSetsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchCallSetsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchCallSetsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchCallSetsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchCallSetsResponse -> m SearchCallSetsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchCallSetsResponse -> m SearchCallSetsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchCallSetsResponse -> m SearchCallSetsResponse

Show SearchCallSetsResponse

Methods

showsPrec :: Int -> SearchCallSetsResponse -> ShowS

show :: SearchCallSetsResponse -> String

showList :: [SearchCallSetsResponse] -> ShowS

Generic SearchCallSetsResponse

Associated Types

type Rep SearchCallSetsResponse :: * -> *

Methods

from :: SearchCallSetsResponse -> Rep SearchCallSetsResponse x

to :: Rep SearchCallSetsResponse x -> SearchCallSetsResponse

ToJSON SearchCallSetsResponse

Methods

toJSON :: SearchCallSetsResponse -> Value

toEncoding :: SearchCallSetsResponse -> Encoding

toJSONList :: [SearchCallSetsResponse] -> Value

toEncodingList :: [SearchCallSetsResponse] -> Encoding

FromJSON SearchCallSetsResponse

Methods

parseJSON :: Value -> Parser SearchCallSetsResponse

parseJSONList :: Value -> Parser [SearchCallSetsResponse]

type Rep SearchCallSetsResponse

type Rep SearchCallSetsResponse = D1 (MetaData "SearchCallSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchCallSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_scsrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_scsrCallSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [CallSet])))))

searchCallSetsResponse :: SearchCallSetsResponse

Creates a value of SearchCallSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• scsrNextPageToken
• scsrCallSets

scsrNextPageToken :: Lens' SearchCallSetsResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

scsrCallSets :: Lens' SearchCallSetsResponse [CallSet]

The list of matching call sets.

SetIAMPolicyRequest

data SetIAMPolicyRequest

Request message for `SetIamPolicy` method.

See: setIAMPolicyRequest smart constructor.

Instances

Eq SetIAMPolicyRequest

Methods

(==) :: SetIAMPolicyRequest -> SetIAMPolicyRequest -> Bool

(/=) :: SetIAMPolicyRequest -> SetIAMPolicyRequest -> Bool

Data SetIAMPolicyRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SetIAMPolicyRequest -> c SetIAMPolicyRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SetIAMPolicyRequest

toConstr :: SetIAMPolicyRequest -> Constr

dataTypeOf :: SetIAMPolicyRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SetIAMPolicyRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SetIAMPolicyRequest)

gmapT :: (forall b. Data b => b -> b) -> SetIAMPolicyRequest -> SetIAMPolicyRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SetIAMPolicyRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SetIAMPolicyRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> SetIAMPolicyRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SetIAMPolicyRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SetIAMPolicyRequest -> m SetIAMPolicyRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SetIAMPolicyRequest -> m SetIAMPolicyRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SetIAMPolicyRequest -> m SetIAMPolicyRequest

Show SetIAMPolicyRequest

Methods

showsPrec :: Int -> SetIAMPolicyRequest -> ShowS

show :: SetIAMPolicyRequest -> String

showList :: [SetIAMPolicyRequest] -> ShowS

Generic SetIAMPolicyRequest

Associated Types

type Rep SetIAMPolicyRequest :: * -> *

Methods

from :: SetIAMPolicyRequest -> Rep SetIAMPolicyRequest x

to :: Rep SetIAMPolicyRequest x -> SetIAMPolicyRequest

ToJSON SetIAMPolicyRequest

Methods

toJSON :: SetIAMPolicyRequest -> Value

toEncoding :: SetIAMPolicyRequest -> Encoding

toJSONList :: [SetIAMPolicyRequest] -> Value

toEncodingList :: [SetIAMPolicyRequest] -> Encoding

FromJSON SetIAMPolicyRequest

Methods

parseJSON :: Value -> Parser SetIAMPolicyRequest

parseJSONList :: Value -> Parser [SetIAMPolicyRequest]

type Rep SetIAMPolicyRequest

type Rep SetIAMPolicyRequest = D1 (MetaData "SetIAMPolicyRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "SetIAMPolicyRequest'" PrefixI True) (S1 (MetaSel (Just Symbol "_siprPolicy") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe Policy))))

setIAMPolicyRequest :: SetIAMPolicyRequest

Creates a value of SetIAMPolicyRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• siprPolicy

siprPolicy :: Lens' SetIAMPolicyRequest (Maybe Policy)

REQUIRED: The complete policy to be applied to the `resource`. The size of the policy is limited to a few 10s of KB. An empty policy is a valid policy but certain Cloud Platform services (such as Projects) might reject them.

SearchReadsRequest

data SearchReadsRequest

The read search request.

See: searchReadsRequest smart constructor.

Instances

Eq SearchReadsRequest

Methods

(==) :: SearchReadsRequest -> SearchReadsRequest -> Bool

(/=) :: SearchReadsRequest -> SearchReadsRequest -> Bool

Data SearchReadsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReadsRequest -> c SearchReadsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReadsRequest

toConstr :: SearchReadsRequest -> Constr

dataTypeOf :: SearchReadsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReadsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReadsRequest)

gmapT :: (forall b. Data b => b -> b) -> SearchReadsRequest -> SearchReadsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchReadsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReadsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReadsRequest -> m SearchReadsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadsRequest -> m SearchReadsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadsRequest -> m SearchReadsRequest

Show SearchReadsRequest

Methods

showsPrec :: Int -> SearchReadsRequest -> ShowS

show :: SearchReadsRequest -> String

showList :: [SearchReadsRequest] -> ShowS

Generic SearchReadsRequest

Associated Types

type Rep SearchReadsRequest :: * -> *

Methods

from :: SearchReadsRequest -> Rep SearchReadsRequest x

to :: Rep SearchReadsRequest x -> SearchReadsRequest

ToJSON SearchReadsRequest

Methods

toJSON :: SearchReadsRequest -> Value

toEncoding :: SearchReadsRequest -> Encoding

toJSONList :: [SearchReadsRequest] -> Value

toEncodingList :: [SearchReadsRequest] -> Encoding

FromJSON SearchReadsRequest

Methods

parseJSON :: Value -> Parser SearchReadsRequest

parseJSONList :: Value -> Parser [SearchReadsRequest]

type Rep SearchReadsRequest

type Rep SearchReadsRequest = D1 (MetaData "SearchReadsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchReadsRequest'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_srrStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((:*:) (S1 (MetaSel (Just Symbol "_srrReadGroupIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_srrReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_srrEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_srrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_srrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_srrReadGroupSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))))))

searchReadsRequest :: SearchReadsRequest

Creates a value of SearchReadsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• srrStart
• srrReadGroupIds
• srrReferenceName
• srrEnd
• srrPageToken
• srrPageSize
• srrReadGroupSetIds

srrStart :: Lens' SearchReadsRequest (Maybe Int64)

The start position of the range on the reference, 0-based inclusive. If specified, `referenceName` must also be specified.

srrReadGroupIds :: Lens' SearchReadsRequest [Text]

The IDs of the read groups within which to search for reads. All specified read groups must belong to the same read group sets. Must specify one of `readGroupSetIds` or `readGroupIds`.

srrReferenceName :: Lens' SearchReadsRequest (Maybe Text)

The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to `*`, only unmapped reads are returned. If unspecified, all reads (mapped and unmapped) are returned.

srrEnd :: Lens' SearchReadsRequest (Maybe Int64)

The end position of the range on the reference, 0-based exclusive. If specified, `referenceName` must also be specified.

srrPageToken :: Lens' SearchReadsRequest (Maybe Text)

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

srrPageSize :: Lens' SearchReadsRequest (Maybe Int32)

The maximum number of results to return in a single page. If unspecified, defaults to 256. The maximum value is 2048.

srrReadGroupSetIds :: Lens' SearchReadsRequest [Text]

The IDs of the read groups sets within which to search for reads. All specified read group sets must be aligned against a common set of reference sequences; this defines the genomic coordinates for the query. Must specify one of `readGroupSetIds` or `readGroupIds`.

OperationMetadataRequest

data OperationMetadataRequest

The original request that started the operation. Note that this will be in current version of the API. If the operation was started with v1beta2 API and a GetOperation is performed on v1 API, a v1 request will be returned.

See: operationMetadataRequest smart constructor.

Instances

Eq OperationMetadataRequest

Methods

(==) :: OperationMetadataRequest -> OperationMetadataRequest -> Bool

(/=) :: OperationMetadataRequest -> OperationMetadataRequest -> Bool

Data OperationMetadataRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationMetadataRequest -> c OperationMetadataRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationMetadataRequest

toConstr :: OperationMetadataRequest -> Constr

dataTypeOf :: OperationMetadataRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c OperationMetadataRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationMetadataRequest)

gmapT :: (forall b. Data b => b -> b) -> OperationMetadataRequest -> OperationMetadataRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> OperationMetadataRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationMetadataRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationMetadataRequest -> m OperationMetadataRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataRequest -> m OperationMetadataRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataRequest -> m OperationMetadataRequest

Show OperationMetadataRequest

Methods

showsPrec :: Int -> OperationMetadataRequest -> ShowS

show :: OperationMetadataRequest -> String

showList :: [OperationMetadataRequest] -> ShowS

Generic OperationMetadataRequest

Associated Types

type Rep OperationMetadataRequest :: * -> *

Methods

from :: OperationMetadataRequest -> Rep OperationMetadataRequest x

to :: Rep OperationMetadataRequest x -> OperationMetadataRequest

ToJSON OperationMetadataRequest

Methods

toJSON :: OperationMetadataRequest -> Value

toEncoding :: OperationMetadataRequest -> Encoding

toJSONList :: [OperationMetadataRequest] -> Value

toEncodingList :: [OperationMetadataRequest] -> Encoding

FromJSON OperationMetadataRequest

Methods

parseJSON :: Value -> Parser OperationMetadataRequest

parseJSONList :: Value -> Parser [OperationMetadataRequest]

type Rep OperationMetadataRequest

type Rep OperationMetadataRequest = D1 (MetaData "OperationMetadataRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "OperationMetadataRequest'" PrefixI True) (S1 (MetaSel (Just Symbol "_omrAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text JSONValue))))

operationMetadataRequest

Arguments

:: HashMap Text JSONValue

omrAddtional

-> OperationMetadataRequest

Creates a value of OperationMetadataRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• omrAddtional

omrAddtional :: Lens' OperationMetadataRequest (HashMap Text JSONValue)

Properties of the object. Contains field 'type with type URL.

MergeVariantsRequestInfoMergeConfig

data MergeVariantsRequestInfoMergeConfig

A mapping between info field keys and the InfoMergeOperations to be performed on them.

See: mergeVariantsRequestInfoMergeConfig smart constructor.

Instances

Eq MergeVariantsRequestInfoMergeConfig

Methods

(==) :: MergeVariantsRequestInfoMergeConfig -> MergeVariantsRequestInfoMergeConfig -> Bool

(/=) :: MergeVariantsRequestInfoMergeConfig -> MergeVariantsRequestInfoMergeConfig -> Bool

Data MergeVariantsRequestInfoMergeConfig

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> MergeVariantsRequestInfoMergeConfig -> c MergeVariantsRequestInfoMergeConfig

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c MergeVariantsRequestInfoMergeConfig

toConstr :: MergeVariantsRequestInfoMergeConfig -> Constr

dataTypeOf :: MergeVariantsRequestInfoMergeConfig -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c MergeVariantsRequestInfoMergeConfig)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c MergeVariantsRequestInfoMergeConfig)

gmapT :: (forall b. Data b => b -> b) -> MergeVariantsRequestInfoMergeConfig -> MergeVariantsRequestInfoMergeConfig

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> MergeVariantsRequestInfoMergeConfig -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> MergeVariantsRequestInfoMergeConfig -> r

gmapQ :: (forall d. Data d => d -> u) -> MergeVariantsRequestInfoMergeConfig -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> MergeVariantsRequestInfoMergeConfig -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> MergeVariantsRequestInfoMergeConfig -> m MergeVariantsRequestInfoMergeConfig

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> MergeVariantsRequestInfoMergeConfig -> m MergeVariantsRequestInfoMergeConfig

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> MergeVariantsRequestInfoMergeConfig -> m MergeVariantsRequestInfoMergeConfig

Show MergeVariantsRequestInfoMergeConfig

Methods

showsPrec :: Int -> MergeVariantsRequestInfoMergeConfig -> ShowS

show :: MergeVariantsRequestInfoMergeConfig -> String

showList :: [MergeVariantsRequestInfoMergeConfig] -> ShowS

Generic MergeVariantsRequestInfoMergeConfig

Associated Types

type Rep MergeVariantsRequestInfoMergeConfig :: * -> *

Methods

from :: MergeVariantsRequestInfoMergeConfig -> Rep MergeVariantsRequestInfoMergeConfig x

to :: Rep MergeVariantsRequestInfoMergeConfig x -> MergeVariantsRequestInfoMergeConfig

ToJSON MergeVariantsRequestInfoMergeConfig

Methods

toJSON :: MergeVariantsRequestInfoMergeConfig -> Value

toEncoding :: MergeVariantsRequestInfoMergeConfig -> Encoding

toJSONList :: [MergeVariantsRequestInfoMergeConfig] -> Value

toEncodingList :: [MergeVariantsRequestInfoMergeConfig] -> Encoding

FromJSON MergeVariantsRequestInfoMergeConfig

Methods

parseJSON :: Value -> Parser MergeVariantsRequestInfoMergeConfig

parseJSONList :: Value -> Parser [MergeVariantsRequestInfoMergeConfig]

type Rep MergeVariantsRequestInfoMergeConfig

type Rep MergeVariantsRequestInfoMergeConfig = D1 (MetaData "MergeVariantsRequestInfoMergeConfig" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "MergeVariantsRequestInfoMergeConfig'" PrefixI True) (S1 (MetaSel (Just Symbol "_mvrimcAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text Text))))

mergeVariantsRequestInfoMergeConfig

Arguments

:: HashMap Text Text

mvrimcAddtional

-> MergeVariantsRequestInfoMergeConfig

Creates a value of MergeVariantsRequestInfoMergeConfig with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• mvrimcAddtional

mvrimcAddtional :: Lens' MergeVariantsRequestInfoMergeConfig (HashMap Text Text)

VariantInfo

data VariantInfo

A map of additional variant information. This must be of the form map (string key mapping to a list of string values).

See: variantInfo smart constructor.

Instances

Eq VariantInfo

Methods

(==) :: VariantInfo -> VariantInfo -> Bool

(/=) :: VariantInfo -> VariantInfo -> Bool

Data VariantInfo

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantInfo -> c VariantInfo

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantInfo

toConstr :: VariantInfo -> Constr

dataTypeOf :: VariantInfo -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantInfo)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantInfo)

gmapT :: (forall b. Data b => b -> b) -> VariantInfo -> VariantInfo

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantInfo -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantInfo -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantInfo -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantInfo -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantInfo -> m VariantInfo

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantInfo -> m VariantInfo

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantInfo -> m VariantInfo

Show VariantInfo

Methods

showsPrec :: Int -> VariantInfo -> ShowS

show :: VariantInfo -> String

showList :: [VariantInfo] -> ShowS

Generic VariantInfo

Associated Types

type Rep VariantInfo :: * -> *

Methods

from :: VariantInfo -> Rep VariantInfo x

to :: Rep VariantInfo x -> VariantInfo

ToJSON VariantInfo

Methods

toJSON :: VariantInfo -> Value

toEncoding :: VariantInfo -> Encoding

toJSONList :: [VariantInfo] -> Value

toEncodingList :: [VariantInfo] -> Encoding

FromJSON VariantInfo

Methods

parseJSON :: Value -> Parser VariantInfo

parseJSONList :: Value -> Parser [VariantInfo]

type Rep VariantInfo

type Rep VariantInfo = D1 (MetaData "VariantInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "VariantInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_viAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

variantInfo

Arguments

:: HashMap Text [JSONValue]

viAddtional

-> VariantInfo

Creates a value of VariantInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• viAddtional

viAddtional :: Lens' VariantInfo (HashMap Text [JSONValue])

Experiment

data Experiment

Instances

Eq Experiment

Methods

(==) :: Experiment -> Experiment -> Bool

(/=) :: Experiment -> Experiment -> Bool

Data Experiment

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Experiment -> c Experiment

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Experiment

toConstr :: Experiment -> Constr

dataTypeOf :: Experiment -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Experiment)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Experiment)

gmapT :: (forall b. Data b => b -> b) -> Experiment -> Experiment

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Experiment -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Experiment -> r

gmapQ :: (forall d. Data d => d -> u) -> Experiment -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Experiment -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Experiment -> m Experiment

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Experiment -> m Experiment

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Experiment -> m Experiment

Show Experiment

Methods

showsPrec :: Int -> Experiment -> ShowS

show :: Experiment -> String

showList :: [Experiment] -> ShowS

Generic Experiment

Associated Types

type Rep Experiment :: * -> *

Methods

from :: Experiment -> Rep Experiment x

to :: Rep Experiment x -> Experiment

ToJSON Experiment

Methods

toJSON :: Experiment -> Value

toEncoding :: Experiment -> Encoding

toJSONList :: [Experiment] -> Value

toEncodingList :: [Experiment] -> Encoding

FromJSON Experiment

Methods

parseJSON :: Value -> Parser Experiment

parseJSONList :: Value -> Parser [Experiment]

type Rep Experiment

type Rep Experiment = D1 (MetaData "Experiment" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Experiment'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_eInstrumentModel") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ePlatformUnit") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_eSequencingCenter") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_eLibraryId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

experiment :: Experiment

Creates a value of Experiment with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• eInstrumentModel
• ePlatformUnit
• eSequencingCenter
• eLibraryId

eInstrumentModel :: Lens' Experiment (Maybe Text)

The instrument model used as part of this experiment. This maps to sequencing technology in the SAM spec.

ePlatformUnit :: Lens' Experiment (Maybe Text)

The platform unit used as part of this experiment, for example flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the 'RG PU field in the SAM spec.

eSequencingCenter :: Lens' Experiment (Maybe Text)

The sequencing center used as part of this experiment.

eLibraryId :: Lens' Experiment (Maybe Text)

A client-supplied library identifier; a library is a collection of DNA fragments which have been prepared for sequencing from a sample. This field is important for quality control as error or bias can be introduced during sample preparation.

SearchVariantSetsRequest

data SearchVariantSetsRequest

The search variant sets request.

See: searchVariantSetsRequest smart constructor.

Instances

Eq SearchVariantSetsRequest

Methods

(==) :: SearchVariantSetsRequest -> SearchVariantSetsRequest -> Bool

(/=) :: SearchVariantSetsRequest -> SearchVariantSetsRequest -> Bool

Data SearchVariantSetsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchVariantSetsRequest -> c SearchVariantSetsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchVariantSetsRequest

toConstr :: SearchVariantSetsRequest -> Constr

dataTypeOf :: SearchVariantSetsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchVariantSetsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchVariantSetsRequest)

gmapT :: (forall b. Data b => b -> b) -> SearchVariantSetsRequest -> SearchVariantSetsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantSetsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantSetsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchVariantSetsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchVariantSetsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchVariantSetsRequest -> m SearchVariantSetsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantSetsRequest -> m SearchVariantSetsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantSetsRequest -> m SearchVariantSetsRequest

Show SearchVariantSetsRequest

Methods

showsPrec :: Int -> SearchVariantSetsRequest -> ShowS

show :: SearchVariantSetsRequest -> String

showList :: [SearchVariantSetsRequest] -> ShowS

Generic SearchVariantSetsRequest

Associated Types

type Rep SearchVariantSetsRequest :: * -> *

Methods

from :: SearchVariantSetsRequest -> Rep SearchVariantSetsRequest x

to :: Rep SearchVariantSetsRequest x -> SearchVariantSetsRequest

ToJSON SearchVariantSetsRequest

Methods

toJSON :: SearchVariantSetsRequest -> Value

toEncoding :: SearchVariantSetsRequest -> Encoding

toJSONList :: [SearchVariantSetsRequest] -> Value

toEncodingList :: [SearchVariantSetsRequest] -> Encoding

FromJSON SearchVariantSetsRequest

Methods

parseJSON :: Value -> Parser SearchVariantSetsRequest

parseJSONList :: Value -> Parser [SearchVariantSetsRequest]

type Rep SearchVariantSetsRequest

type Rep SearchVariantSetsRequest = D1 (MetaData "SearchVariantSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchVariantSetsRequest'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_svsrDataSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) ((:*:) (S1 (MetaSel (Just Symbol "_svsrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_svsrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))))

searchVariantSetsRequest :: SearchVariantSetsRequest

Creates a value of SearchVariantSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• svsrDataSetIds
• svsrPageToken
• svsrPageSize

svsrDataSetIds :: Lens' SearchVariantSetsRequest [Text]

Exactly one dataset ID must be provided here. Only variant sets which belong to this dataset will be returned.

svsrPageToken :: Lens' SearchVariantSetsRequest (Maybe Text)

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

svsrPageSize :: Lens' SearchVariantSetsRequest (Maybe Int32)

The maximum number of results to return in a single page. If unspecified, defaults to 1024.

AnnotationInfo

data AnnotationInfo

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

See: annotationInfo smart constructor.

Instances

Eq AnnotationInfo

Methods

(==) :: AnnotationInfo -> AnnotationInfo -> Bool

(/=) :: AnnotationInfo -> AnnotationInfo -> Bool

Data AnnotationInfo

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> AnnotationInfo -> c AnnotationInfo

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c AnnotationInfo

toConstr :: AnnotationInfo -> Constr

dataTypeOf :: AnnotationInfo -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c AnnotationInfo)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c AnnotationInfo)

gmapT :: (forall b. Data b => b -> b) -> AnnotationInfo -> AnnotationInfo

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationInfo -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationInfo -> r

gmapQ :: (forall d. Data d => d -> u) -> AnnotationInfo -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> AnnotationInfo -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> AnnotationInfo -> m AnnotationInfo

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationInfo -> m AnnotationInfo

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationInfo -> m AnnotationInfo

Show AnnotationInfo

Methods

showsPrec :: Int -> AnnotationInfo -> ShowS

show :: AnnotationInfo -> String

showList :: [AnnotationInfo] -> ShowS

Generic AnnotationInfo

Associated Types

type Rep AnnotationInfo :: * -> *

Methods

from :: AnnotationInfo -> Rep AnnotationInfo x

to :: Rep AnnotationInfo x -> AnnotationInfo

ToJSON AnnotationInfo

Methods

toJSON :: AnnotationInfo -> Value

toEncoding :: AnnotationInfo -> Encoding

toJSONList :: [AnnotationInfo] -> Value

toEncodingList :: [AnnotationInfo] -> Encoding

FromJSON AnnotationInfo

Methods

parseJSON :: Value -> Parser AnnotationInfo

parseJSONList :: Value -> Parser [AnnotationInfo]

type Rep AnnotationInfo

type Rep AnnotationInfo = D1 (MetaData "AnnotationInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "AnnotationInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_aiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

annotationInfo

Arguments

:: HashMap Text [JSONValue]

aiAddtional

-> AnnotationInfo

Creates a value of AnnotationInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• aiAddtional

aiAddtional :: Lens' AnnotationInfo (HashMap Text [JSONValue])

SearchAnnotationsResponse

data SearchAnnotationsResponse

Instances

Eq SearchAnnotationsResponse

Methods

(==) :: SearchAnnotationsResponse -> SearchAnnotationsResponse -> Bool

(/=) :: SearchAnnotationsResponse -> SearchAnnotationsResponse -> Bool

Data SearchAnnotationsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchAnnotationsResponse -> c SearchAnnotationsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchAnnotationsResponse

toConstr :: SearchAnnotationsResponse -> Constr

dataTypeOf :: SearchAnnotationsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchAnnotationsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchAnnotationsResponse)

gmapT :: (forall b. Data b => b -> b) -> SearchAnnotationsResponse -> SearchAnnotationsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchAnnotationsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchAnnotationsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchAnnotationsResponse -> m SearchAnnotationsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationsResponse -> m SearchAnnotationsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationsResponse -> m SearchAnnotationsResponse

Show SearchAnnotationsResponse

Methods

showsPrec :: Int -> SearchAnnotationsResponse -> ShowS

show :: SearchAnnotationsResponse -> String

showList :: [SearchAnnotationsResponse] -> ShowS

Generic SearchAnnotationsResponse

Associated Types

type Rep SearchAnnotationsResponse :: * -> *

Methods

from :: SearchAnnotationsResponse -> Rep SearchAnnotationsResponse x

to :: Rep SearchAnnotationsResponse x -> SearchAnnotationsResponse

ToJSON SearchAnnotationsResponse

Methods

toJSON :: SearchAnnotationsResponse -> Value

toEncoding :: SearchAnnotationsResponse -> Encoding

toJSONList :: [SearchAnnotationsResponse] -> Value

toEncodingList :: [SearchAnnotationsResponse] -> Encoding

FromJSON SearchAnnotationsResponse

Methods

parseJSON :: Value -> Parser SearchAnnotationsResponse

parseJSONList :: Value -> Parser [SearchAnnotationsResponse]

type Rep SearchAnnotationsResponse

type Rep SearchAnnotationsResponse = D1 (MetaData "SearchAnnotationsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchAnnotationsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_sarAnnotations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Annotation]))) (S1 (MetaSel (Just Symbol "_sarNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

searchAnnotationsResponse :: SearchAnnotationsResponse

Creates a value of SearchAnnotationsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• sarAnnotations
• sarNextPageToken

sarAnnotations :: Lens' SearchAnnotationsResponse [Annotation]

The matching annotations.

sarNextPageToken :: Lens' SearchAnnotationsResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

SearchAnnotationSetsRequest

data SearchAnnotationSetsRequest

Instances

Eq SearchAnnotationSetsRequest

Methods

(==) :: SearchAnnotationSetsRequest -> SearchAnnotationSetsRequest -> Bool

(/=) :: SearchAnnotationSetsRequest -> SearchAnnotationSetsRequest -> Bool

Data SearchAnnotationSetsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchAnnotationSetsRequest -> c SearchAnnotationSetsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchAnnotationSetsRequest

toConstr :: SearchAnnotationSetsRequest -> Constr

dataTypeOf :: SearchAnnotationSetsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchAnnotationSetsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchAnnotationSetsRequest)

gmapT :: (forall b. Data b => b -> b) -> SearchAnnotationSetsRequest -> SearchAnnotationSetsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationSetsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationSetsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchAnnotationSetsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchAnnotationSetsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsRequest -> m SearchAnnotationSetsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsRequest -> m SearchAnnotationSetsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsRequest -> m SearchAnnotationSetsRequest

Show SearchAnnotationSetsRequest

Methods

showsPrec :: Int -> SearchAnnotationSetsRequest -> ShowS

show :: SearchAnnotationSetsRequest -> String

showList :: [SearchAnnotationSetsRequest] -> ShowS

Generic SearchAnnotationSetsRequest

Associated Types

type Rep SearchAnnotationSetsRequest :: * -> *

Methods

from :: SearchAnnotationSetsRequest -> Rep SearchAnnotationSetsRequest x

to :: Rep SearchAnnotationSetsRequest x -> SearchAnnotationSetsRequest

ToJSON SearchAnnotationSetsRequest

Methods

toJSON :: SearchAnnotationSetsRequest -> Value

toEncoding :: SearchAnnotationSetsRequest -> Encoding

toJSONList :: [SearchAnnotationSetsRequest] -> Value

toEncodingList :: [SearchAnnotationSetsRequest] -> Encoding

FromJSON SearchAnnotationSetsRequest

Methods

parseJSON :: Value -> Parser SearchAnnotationSetsRequest

parseJSONList :: Value -> Parser [SearchAnnotationSetsRequest]

type Rep SearchAnnotationSetsRequest

type Rep SearchAnnotationSetsRequest = D1 (MetaData "SearchAnnotationSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchAnnotationSetsRequest'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_sasrReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_sasrTypes") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_sasrDataSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))))) ((:*:) (S1 (MetaSel (Just Symbol "_sasrName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_sasrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sasrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))))))

searchAnnotationSetsRequest :: SearchAnnotationSetsRequest

Creates a value of SearchAnnotationSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• sasrReferenceSetId
• sasrTypes
• sasrDataSetIds
• sasrName
• sasrPageToken
• sasrPageSize

sasrReferenceSetId :: Lens' SearchAnnotationSetsRequest (Maybe Text)

If specified, only annotation sets associated with the given reference set are returned.

sasrTypes :: Lens' SearchAnnotationSetsRequest [Text]

If specified, only annotation sets that have any of these types are returned.

sasrDataSetIds :: Lens' SearchAnnotationSetsRequest [Text]

Required. The dataset IDs to search within. Caller must have `READ` access to these datasets.

sasrName :: Lens' SearchAnnotationSetsRequest (Maybe Text)

Only return annotations sets for which a substring of the name matches this string (case insensitive).

sasrPageToken :: Lens' SearchAnnotationSetsRequest (Maybe Text)

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

sasrPageSize :: Lens' SearchAnnotationSetsRequest (Maybe Int32)

The maximum number of results to return in a single page. If unspecified, defaults to 128. The maximum value is 1024.

ImportReadGroupSetsRequestPartitionStrategy

data ImportReadGroupSetsRequestPartitionStrategy

The partition strategy describes how read groups are partitioned into read group sets.

Constructors

PartitionStrategyUnspecified

PARTITION_STRATEGY_UNSPECIFIED

PerFilePerSample

PER_FILE_PER_SAMPLE In most cases, this strategy yields one read group set per file. This is the default behavior. Allocate one read group set per file per sample. For BAM files, read groups are considered to share a sample if they have identical sample names. Furthermore, all reads for each file which do not belong to a read group, if any, will be grouped into a single read group set per-file.

MergeAll

MERGE_ALL Includes all read groups in all imported files into a single read group set. Requires that the headers for all imported files are equivalent. All reads which do not belong to a read group, if any, will be grouped into a separate read group set.

Instances

Enum ImportReadGroupSetsRequestPartitionStrategy

Methods

succ :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy

pred :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy

toEnum :: Int -> ImportReadGroupSetsRequestPartitionStrategy

fromEnum :: ImportReadGroupSetsRequestPartitionStrategy -> Int

enumFrom :: ImportReadGroupSetsRequestPartitionStrategy -> [ImportReadGroupSetsRequestPartitionStrategy]

enumFromThen :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> [ImportReadGroupSetsRequestPartitionStrategy]

enumFromTo :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> [ImportReadGroupSetsRequestPartitionStrategy]

enumFromThenTo :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> [ImportReadGroupSetsRequestPartitionStrategy]

Eq ImportReadGroupSetsRequestPartitionStrategy

Methods

(==) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool

(/=) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool

Data ImportReadGroupSetsRequestPartitionStrategy

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportReadGroupSetsRequestPartitionStrategy -> c ImportReadGroupSetsRequestPartitionStrategy

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportReadGroupSetsRequestPartitionStrategy

toConstr :: ImportReadGroupSetsRequestPartitionStrategy -> Constr

dataTypeOf :: ImportReadGroupSetsRequestPartitionStrategy -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ImportReadGroupSetsRequestPartitionStrategy)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportReadGroupSetsRequestPartitionStrategy)

gmapT :: (forall b. Data b => b -> b) -> ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsRequestPartitionStrategy -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsRequestPartitionStrategy -> r

gmapQ :: (forall d. Data d => d -> u) -> ImportReadGroupSetsRequestPartitionStrategy -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportReadGroupSetsRequestPartitionStrategy -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequestPartitionStrategy -> m ImportReadGroupSetsRequestPartitionStrategy

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequestPartitionStrategy -> m ImportReadGroupSetsRequestPartitionStrategy

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequestPartitionStrategy -> m ImportReadGroupSetsRequestPartitionStrategy

Ord ImportReadGroupSetsRequestPartitionStrategy

Methods

compare :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Ordering

(<) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool

(<=) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool

(>) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool

(>=) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool

max :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy

min :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy

Read ImportReadGroupSetsRequestPartitionStrategy

Methods

readsPrec :: Int -> ReadS ImportReadGroupSetsRequestPartitionStrategy

readList :: ReadS [ImportReadGroupSetsRequestPartitionStrategy]

readPrec :: ReadPrec ImportReadGroupSetsRequestPartitionStrategy

readListPrec :: ReadPrec [ImportReadGroupSetsRequestPartitionStrategy]

Show ImportReadGroupSetsRequestPartitionStrategy

Methods

showsPrec :: Int -> ImportReadGroupSetsRequestPartitionStrategy -> ShowS

show :: ImportReadGroupSetsRequestPartitionStrategy -> String

showList :: [ImportReadGroupSetsRequestPartitionStrategy] -> ShowS

Generic ImportReadGroupSetsRequestPartitionStrategy

Associated Types

type Rep ImportReadGroupSetsRequestPartitionStrategy :: * -> *

Methods

from :: ImportReadGroupSetsRequestPartitionStrategy -> Rep ImportReadGroupSetsRequestPartitionStrategy x

to :: Rep ImportReadGroupSetsRequestPartitionStrategy x -> ImportReadGroupSetsRequestPartitionStrategy

Hashable ImportReadGroupSetsRequestPartitionStrategy

Methods

hashWithSalt :: Int -> ImportReadGroupSetsRequestPartitionStrategy -> Int

hash :: ImportReadGroupSetsRequestPartitionStrategy -> Int

ToJSON ImportReadGroupSetsRequestPartitionStrategy

Methods

toJSON :: ImportReadGroupSetsRequestPartitionStrategy -> Value

toEncoding :: ImportReadGroupSetsRequestPartitionStrategy -> Encoding

toJSONList :: [ImportReadGroupSetsRequestPartitionStrategy] -> Value

toEncodingList :: [ImportReadGroupSetsRequestPartitionStrategy] -> Encoding

FromJSON ImportReadGroupSetsRequestPartitionStrategy

Methods

parseJSON :: Value -> Parser ImportReadGroupSetsRequestPartitionStrategy

parseJSONList :: Value -> Parser [ImportReadGroupSetsRequestPartitionStrategy]

FromHttpApiData ImportReadGroupSetsRequestPartitionStrategy

Methods

parseUrlPiece :: Text -> Either Text ImportReadGroupSetsRequestPartitionStrategy

parseHeader :: ByteString -> Either Text ImportReadGroupSetsRequestPartitionStrategy

parseQueryParam :: Text -> Either Text ImportReadGroupSetsRequestPartitionStrategy

ToHttpApiData ImportReadGroupSetsRequestPartitionStrategy

Methods

toUrlPiece :: ImportReadGroupSetsRequestPartitionStrategy -> Text

toHeader :: ImportReadGroupSetsRequestPartitionStrategy -> ByteString

toQueryParam :: ImportReadGroupSetsRequestPartitionStrategy -> Text

type Rep ImportReadGroupSetsRequestPartitionStrategy

type Rep ImportReadGroupSetsRequestPartitionStrategy = D1 (MetaData "ImportReadGroupSetsRequestPartitionStrategy" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) ((:+:) (C1 (MetaCons "PartitionStrategyUnspecified" PrefixI False) U1) ((:+:) (C1 (MetaCons "PerFilePerSample" PrefixI False) U1) (C1 (MetaCons "MergeAll" PrefixI False) U1)))

SearchVariantsResponse

data SearchVariantsResponse

The variant search response.

See: searchVariantsResponse smart constructor.

Instances

Eq SearchVariantsResponse

Methods

(==) :: SearchVariantsResponse -> SearchVariantsResponse -> Bool

(/=) :: SearchVariantsResponse -> SearchVariantsResponse -> Bool

Data SearchVariantsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchVariantsResponse -> c SearchVariantsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchVariantsResponse

toConstr :: SearchVariantsResponse -> Constr

dataTypeOf :: SearchVariantsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchVariantsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchVariantsResponse)

gmapT :: (forall b. Data b => b -> b) -> SearchVariantsResponse -> SearchVariantsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchVariantsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchVariantsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchVariantsResponse -> m SearchVariantsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantsResponse -> m SearchVariantsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantsResponse -> m SearchVariantsResponse

Show SearchVariantsResponse

Methods

showsPrec :: Int -> SearchVariantsResponse -> ShowS

show :: SearchVariantsResponse -> String

showList :: [SearchVariantsResponse] -> ShowS

Generic SearchVariantsResponse

Associated Types

type Rep SearchVariantsResponse :: * -> *

Methods

from :: SearchVariantsResponse -> Rep SearchVariantsResponse x

to :: Rep SearchVariantsResponse x -> SearchVariantsResponse

ToJSON SearchVariantsResponse

Methods

toJSON :: SearchVariantsResponse -> Value

toEncoding :: SearchVariantsResponse -> Encoding

toJSONList :: [SearchVariantsResponse] -> Value

toEncodingList :: [SearchVariantsResponse] -> Encoding

FromJSON SearchVariantsResponse

Methods

parseJSON :: Value -> Parser SearchVariantsResponse

parseJSONList :: Value -> Parser [SearchVariantsResponse]

type Rep SearchVariantsResponse

type Rep SearchVariantsResponse = D1 (MetaData "SearchVariantsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchVariantsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_svrVariants") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Variant]))) (S1 (MetaSel (Just Symbol "_svrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

searchVariantsResponse :: SearchVariantsResponse

Creates a value of SearchVariantsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• svrVariants
• svrNextPageToken

svrVariants :: Lens' SearchVariantsResponse [Variant]

The list of matching Variants.

svrNextPageToken :: Lens' SearchVariantsResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

OperationMetadataRuntimeMetadata

data OperationMetadataRuntimeMetadata

Runtime metadata on this Operation.

See: operationMetadataRuntimeMetadata smart constructor.

Instances

Eq OperationMetadataRuntimeMetadata

Methods

(==) :: OperationMetadataRuntimeMetadata -> OperationMetadataRuntimeMetadata -> Bool

(/=) :: OperationMetadataRuntimeMetadata -> OperationMetadataRuntimeMetadata -> Bool

Data OperationMetadataRuntimeMetadata

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationMetadataRuntimeMetadata -> c OperationMetadataRuntimeMetadata

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationMetadataRuntimeMetadata

toConstr :: OperationMetadataRuntimeMetadata -> Constr

dataTypeOf :: OperationMetadataRuntimeMetadata -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c OperationMetadataRuntimeMetadata)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationMetadataRuntimeMetadata)

gmapT :: (forall b. Data b => b -> b) -> OperationMetadataRuntimeMetadata -> OperationMetadataRuntimeMetadata

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataRuntimeMetadata -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataRuntimeMetadata -> r

gmapQ :: (forall d. Data d => d -> u) -> OperationMetadataRuntimeMetadata -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationMetadataRuntimeMetadata -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationMetadataRuntimeMetadata -> m OperationMetadataRuntimeMetadata

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataRuntimeMetadata -> m OperationMetadataRuntimeMetadata

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataRuntimeMetadata -> m OperationMetadataRuntimeMetadata

Show OperationMetadataRuntimeMetadata

Methods

showsPrec :: Int -> OperationMetadataRuntimeMetadata -> ShowS

show :: OperationMetadataRuntimeMetadata -> String

showList :: [OperationMetadataRuntimeMetadata] -> ShowS

Generic OperationMetadataRuntimeMetadata

Associated Types

type Rep OperationMetadataRuntimeMetadata :: * -> *

Methods

from :: OperationMetadataRuntimeMetadata -> Rep OperationMetadataRuntimeMetadata x

to :: Rep OperationMetadataRuntimeMetadata x -> OperationMetadataRuntimeMetadata

ToJSON OperationMetadataRuntimeMetadata

Methods

toJSON :: OperationMetadataRuntimeMetadata -> Value

toEncoding :: OperationMetadataRuntimeMetadata -> Encoding

toJSONList :: [OperationMetadataRuntimeMetadata] -> Value

toEncodingList :: [OperationMetadataRuntimeMetadata] -> Encoding

FromJSON OperationMetadataRuntimeMetadata

Methods

parseJSON :: Value -> Parser OperationMetadataRuntimeMetadata

parseJSONList :: Value -> Parser [OperationMetadataRuntimeMetadata]

type Rep OperationMetadataRuntimeMetadata

type Rep OperationMetadataRuntimeMetadata = D1 (MetaData "OperationMetadataRuntimeMetadata" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "OperationMetadataRuntimeMetadata'" PrefixI True) (S1 (MetaSel (Just Symbol "_omrmAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text JSONValue))))

operationMetadataRuntimeMetadata

Arguments

:: HashMap Text JSONValue

omrmAddtional

-> OperationMetadataRuntimeMetadata

Creates a value of OperationMetadataRuntimeMetadata with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• omrmAddtional

omrmAddtional :: Lens' OperationMetadataRuntimeMetadata (HashMap Text JSONValue)

Properties of the object. Contains field 'type with type URL.

ClinicalCondition

data ClinicalCondition

Instances

Eq ClinicalCondition

Methods

(==) :: ClinicalCondition -> ClinicalCondition -> Bool

(/=) :: ClinicalCondition -> ClinicalCondition -> Bool

Data ClinicalCondition

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ClinicalCondition -> c ClinicalCondition

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ClinicalCondition

toConstr :: ClinicalCondition -> Constr

dataTypeOf :: ClinicalCondition -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ClinicalCondition)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ClinicalCondition)

gmapT :: (forall b. Data b => b -> b) -> ClinicalCondition -> ClinicalCondition

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ClinicalCondition -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ClinicalCondition -> r

gmapQ :: (forall d. Data d => d -> u) -> ClinicalCondition -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ClinicalCondition -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ClinicalCondition -> m ClinicalCondition

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ClinicalCondition -> m ClinicalCondition

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ClinicalCondition -> m ClinicalCondition

Show ClinicalCondition

Methods

showsPrec :: Int -> ClinicalCondition -> ShowS

show :: ClinicalCondition -> String

showList :: [ClinicalCondition] -> ShowS

Generic ClinicalCondition

Associated Types

type Rep ClinicalCondition :: * -> *

Methods

from :: ClinicalCondition -> Rep ClinicalCondition x

to :: Rep ClinicalCondition x -> ClinicalCondition

ToJSON ClinicalCondition

Methods

toJSON :: ClinicalCondition -> Value

toEncoding :: ClinicalCondition -> Encoding

toJSONList :: [ClinicalCondition] -> Value

toEncodingList :: [ClinicalCondition] -> Encoding

FromJSON ClinicalCondition

Methods

parseJSON :: Value -> Parser ClinicalCondition

parseJSONList :: Value -> Parser [ClinicalCondition]

type Rep ClinicalCondition

type Rep ClinicalCondition = D1 (MetaData "ClinicalCondition" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ClinicalCondition'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_ccExternalIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ExternalId]))) (S1 (MetaSel (Just Symbol "_ccNames") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((:*:) (S1 (MetaSel (Just Symbol "_ccConceptId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ccOmimId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

clinicalCondition :: ClinicalCondition

Creates a value of ClinicalCondition with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• ccExternalIds
• ccNames
• ccConceptId
• ccOmimId

ccExternalIds :: Lens' ClinicalCondition [ExternalId]

The set of external IDs for this condition.

ccNames :: Lens' ClinicalCondition [Text]

A set of names for the condition.

ccConceptId :: Lens' ClinicalCondition (Maybe Text)

The MedGen concept id associated with this gene. Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/

ccOmimId :: Lens' ClinicalCondition (Maybe Text)

The OMIM id for this condition. Search for these IDs at http://omim.org/

SearchCallSetsRequest

data SearchCallSetsRequest

The call set search request.

See: searchCallSetsRequest smart constructor.

Instances

Eq SearchCallSetsRequest

Methods

(==) :: SearchCallSetsRequest -> SearchCallSetsRequest -> Bool

(/=) :: SearchCallSetsRequest -> SearchCallSetsRequest -> Bool

Data SearchCallSetsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchCallSetsRequest -> c SearchCallSetsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchCallSetsRequest

toConstr :: SearchCallSetsRequest -> Constr

dataTypeOf :: SearchCallSetsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchCallSetsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchCallSetsRequest)

gmapT :: (forall b. Data b => b -> b) -> SearchCallSetsRequest -> SearchCallSetsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchCallSetsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchCallSetsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchCallSetsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchCallSetsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchCallSetsRequest -> m SearchCallSetsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchCallSetsRequest -> m SearchCallSetsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchCallSetsRequest -> m SearchCallSetsRequest

Show SearchCallSetsRequest

Methods

showsPrec :: Int -> SearchCallSetsRequest -> ShowS

show :: SearchCallSetsRequest -> String

showList :: [SearchCallSetsRequest] -> ShowS

Generic SearchCallSetsRequest

Associated Types

type Rep SearchCallSetsRequest :: * -> *

Methods

from :: SearchCallSetsRequest -> Rep SearchCallSetsRequest x

to :: Rep SearchCallSetsRequest x -> SearchCallSetsRequest

ToJSON SearchCallSetsRequest

Methods

toJSON :: SearchCallSetsRequest -> Value

toEncoding :: SearchCallSetsRequest -> Encoding

toJSONList :: [SearchCallSetsRequest] -> Value

toEncodingList :: [SearchCallSetsRequest] -> Encoding

FromJSON SearchCallSetsRequest

Methods

parseJSON :: Value -> Parser SearchCallSetsRequest

parseJSONList :: Value -> Parser [SearchCallSetsRequest]

type Rep SearchCallSetsRequest

type Rep SearchCallSetsRequest = D1 (MetaData "SearchCallSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchCallSetsRequest'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_scsrName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_scsrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_scsrVariantSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_scsrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))))

searchCallSetsRequest :: SearchCallSetsRequest

Creates a value of SearchCallSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• scsrName
• scsrPageToken
• scsrVariantSetIds
• scsrPageSize

scsrName :: Lens' SearchCallSetsRequest (Maybe Text)

Only return call sets for which a substring of the name matches this string.

scsrPageToken :: Lens' SearchCallSetsRequest (Maybe Text)

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

scsrVariantSetIds :: Lens' SearchCallSetsRequest [Text]

Restrict the query to call sets within the given variant sets. At least one ID must be provided.

scsrPageSize :: Lens' SearchCallSetsRequest (Maybe Int32)

The maximum number of results to return in a single page. If unspecified, defaults to 1024.

Entry

data Entry

Instances

Eq Entry

Methods

(==) :: Entry -> Entry -> Bool

(/=) :: Entry -> Entry -> Bool

Data Entry

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Entry -> c Entry

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Entry

toConstr :: Entry -> Constr

dataTypeOf :: Entry -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Entry)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Entry)

gmapT :: (forall b. Data b => b -> b) -> Entry -> Entry

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Entry -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Entry -> r

gmapQ :: (forall d. Data d => d -> u) -> Entry -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Entry -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Entry -> m Entry

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Entry -> m Entry

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Entry -> m Entry

Show Entry

Methods

showsPrec :: Int -> Entry -> ShowS

show :: Entry -> String

showList :: [Entry] -> ShowS

Generic Entry

Associated Types

type Rep Entry :: * -> *

Methods

from :: Entry -> Rep Entry x

to :: Rep Entry x -> Entry

ToJSON Entry

Methods

toJSON :: Entry -> Value

toEncoding :: Entry -> Encoding

toJSONList :: [Entry] -> Value

toEncodingList :: [Entry] -> Encoding

FromJSON Entry

Methods

parseJSON :: Value -> Parser Entry

parseJSONList :: Value -> Parser [Entry]

type Rep Entry

type Rep Entry = D1 (MetaData "Entry" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Entry'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_eStatus") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Status))) (S1 (MetaSel (Just Symbol "_eAnnotation") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Annotation)))))

entry :: Entry

Creates a value of Entry with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• eStatus
• eAnnotation

eStatus :: Lens' Entry (Maybe Status)

The creation status.

eAnnotation :: Lens' Entry (Maybe Annotation)

The created annotation, if creation was successful.

SearchReadsResponse

data SearchReadsResponse

The read search response.

See: searchReadsResponse smart constructor.

Instances

Eq SearchReadsResponse

Methods

(==) :: SearchReadsResponse -> SearchReadsResponse -> Bool

(/=) :: SearchReadsResponse -> SearchReadsResponse -> Bool

Data SearchReadsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReadsResponse -> c SearchReadsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReadsResponse

toConstr :: SearchReadsResponse -> Constr

dataTypeOf :: SearchReadsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReadsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReadsResponse)

gmapT :: (forall b. Data b => b -> b) -> SearchReadsResponse -> SearchReadsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchReadsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReadsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReadsResponse -> m SearchReadsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadsResponse -> m SearchReadsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadsResponse -> m SearchReadsResponse

Show SearchReadsResponse

Methods

showsPrec :: Int -> SearchReadsResponse -> ShowS

show :: SearchReadsResponse -> String

showList :: [SearchReadsResponse] -> ShowS

Generic SearchReadsResponse

Associated Types

type Rep SearchReadsResponse :: * -> *

Methods

from :: SearchReadsResponse -> Rep SearchReadsResponse x

to :: Rep SearchReadsResponse x -> SearchReadsResponse

ToJSON SearchReadsResponse

Methods

toJSON :: SearchReadsResponse -> Value

toEncoding :: SearchReadsResponse -> Encoding

toJSONList :: [SearchReadsResponse] -> Value

toEncodingList :: [SearchReadsResponse] -> Encoding

FromJSON SearchReadsResponse

Methods

parseJSON :: Value -> Parser SearchReadsResponse

parseJSONList :: Value -> Parser [SearchReadsResponse]

type Rep SearchReadsResponse

type Rep SearchReadsResponse = D1 (MetaData "SearchReadsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchReadsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_sNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sAlignments") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Read'])))))

searchReadsResponse :: SearchReadsResponse

Creates a value of SearchReadsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• sNextPageToken
• sAlignments

sNextPageToken :: Lens' SearchReadsResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

sAlignments :: Lens' SearchReadsResponse [Read']

The list of matching alignments sorted by mapped genomic coordinate, if any, ascending in position within the same reference. Unmapped reads, which have no position, are returned contiguously and are sorted in ascending lexicographic order by fragment name.

Program

data Program

Instances

Eq Program

Methods

(==) :: Program -> Program -> Bool

(/=) :: Program -> Program -> Bool

Data Program

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Program -> c Program

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Program

toConstr :: Program -> Constr

dataTypeOf :: Program -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Program)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Program)

gmapT :: (forall b. Data b => b -> b) -> Program -> Program

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Program -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Program -> r

gmapQ :: (forall d. Data d => d -> u) -> Program -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Program -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Program -> m Program

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Program -> m Program

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Program -> m Program

Show Program

Methods

showsPrec :: Int -> Program -> ShowS

show :: Program -> String

showList :: [Program] -> ShowS

Generic Program

Associated Types

type Rep Program :: * -> *

Methods

from :: Program -> Rep Program x

to :: Rep Program x -> Program

ToJSON Program

Methods

toJSON :: Program -> Value

toEncoding :: Program -> Encoding

toJSONList :: [Program] -> Value

toEncodingList :: [Program] -> Encoding

FromJSON Program

Methods

parseJSON :: Value -> Parser Program

parseJSONList :: Value -> Parser [Program]

type Rep Program

type Rep Program = D1 (MetaData "Program" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Program'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_pPrevProgramId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_pName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_pVersion") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_pId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_pCommandLine") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

program :: Program

Creates a value of Program with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• pPrevProgramId
• pName
• pVersion
• pId
• pCommandLine

pPrevProgramId :: Lens' Program (Maybe Text)

The ID of the program run before this one.

pName :: Lens' Program (Maybe Text)

The display name of the program. This is typically the colloquial name of the tool used, for example 'bwa' or 'picard'.

pVersion :: Lens' Program (Maybe Text)

The version of the program run.

pId :: Lens' Program (Maybe Text)

The user specified locally unique ID of the program. Used along with `prevProgramId` to define an ordering between programs.

pCommandLine :: Lens' Program (Maybe Text)

The command line used to run this program.

SearchReferencesRequest

data SearchReferencesRequest

Instances

Eq SearchReferencesRequest

Methods

(==) :: SearchReferencesRequest -> SearchReferencesRequest -> Bool

(/=) :: SearchReferencesRequest -> SearchReferencesRequest -> Bool

Data SearchReferencesRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReferencesRequest -> c SearchReferencesRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReferencesRequest

toConstr :: SearchReferencesRequest -> Constr

dataTypeOf :: SearchReferencesRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReferencesRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReferencesRequest)

gmapT :: (forall b. Data b => b -> b) -> SearchReferencesRequest -> SearchReferencesRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferencesRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferencesRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchReferencesRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReferencesRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReferencesRequest -> m SearchReferencesRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferencesRequest -> m SearchReferencesRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferencesRequest -> m SearchReferencesRequest

Show SearchReferencesRequest

Methods

showsPrec :: Int -> SearchReferencesRequest -> ShowS

show :: SearchReferencesRequest -> String

showList :: [SearchReferencesRequest] -> ShowS

Generic SearchReferencesRequest

Associated Types

type Rep SearchReferencesRequest :: * -> *

Methods

from :: SearchReferencesRequest -> Rep SearchReferencesRequest x

to :: Rep SearchReferencesRequest x -> SearchReferencesRequest

ToJSON SearchReferencesRequest

Methods

toJSON :: SearchReferencesRequest -> Value

toEncoding :: SearchReferencesRequest -> Encoding

toJSONList :: [SearchReferencesRequest] -> Value

toEncodingList :: [SearchReferencesRequest] -> Encoding

FromJSON SearchReferencesRequest

Methods

parseJSON :: Value -> Parser SearchReferencesRequest

parseJSONList :: Value -> Parser [SearchReferencesRequest]

type Rep SearchReferencesRequest

type Rep SearchReferencesRequest = D1 (MetaData "SearchReferencesRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchReferencesRequest'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_sReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sMD5checksums") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((:*:) (S1 (MetaSel (Just Symbol "_sAccessions") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) ((:*:) (S1 (MetaSel (Just Symbol "_sPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))))))

searchReferencesRequest :: SearchReferencesRequest

Creates a value of SearchReferencesRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• sReferenceSetId
• sMD5checksums
• sAccessions
• sPageToken
• sPageSize

sReferenceSetId :: Lens' SearchReferencesRequest (Maybe Text)

If present, return only references which belong to this reference set.

sMD5checksums :: Lens' SearchReferencesRequest [Text]

If present, return references for which the md5checksum matches exactly.

sAccessions :: Lens' SearchReferencesRequest [Text]

If present, return references for which a prefix of any of sourceAccessions match any of these strings. Accession numbers typically have a main number and a version, for example `GCF_000001405.26`.

sPageToken :: Lens' SearchReferencesRequest (Maybe Text)

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

sPageSize :: Lens' SearchReferencesRequest (Maybe Int32)

The maximum number of results to return in a single page. If unspecified, defaults to 1024. The maximum value is 4096.

BatchCreateAnnotationsResponse

data BatchCreateAnnotationsResponse

Instances

Eq BatchCreateAnnotationsResponse

Methods

(==) :: BatchCreateAnnotationsResponse -> BatchCreateAnnotationsResponse -> Bool

(/=) :: BatchCreateAnnotationsResponse -> BatchCreateAnnotationsResponse -> Bool

Data BatchCreateAnnotationsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> BatchCreateAnnotationsResponse -> c BatchCreateAnnotationsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c BatchCreateAnnotationsResponse

toConstr :: BatchCreateAnnotationsResponse -> Constr

dataTypeOf :: BatchCreateAnnotationsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c BatchCreateAnnotationsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c BatchCreateAnnotationsResponse)

gmapT :: (forall b. Data b => b -> b) -> BatchCreateAnnotationsResponse -> BatchCreateAnnotationsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> BatchCreateAnnotationsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> BatchCreateAnnotationsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> BatchCreateAnnotationsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> BatchCreateAnnotationsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsResponse -> m BatchCreateAnnotationsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsResponse -> m BatchCreateAnnotationsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsResponse -> m BatchCreateAnnotationsResponse

Show BatchCreateAnnotationsResponse

Methods

showsPrec :: Int -> BatchCreateAnnotationsResponse -> ShowS

show :: BatchCreateAnnotationsResponse -> String

showList :: [BatchCreateAnnotationsResponse] -> ShowS

Generic BatchCreateAnnotationsResponse

Associated Types

type Rep BatchCreateAnnotationsResponse :: * -> *

Methods

from :: BatchCreateAnnotationsResponse -> Rep BatchCreateAnnotationsResponse x

to :: Rep BatchCreateAnnotationsResponse x -> BatchCreateAnnotationsResponse

ToJSON BatchCreateAnnotationsResponse

Methods

toJSON :: BatchCreateAnnotationsResponse -> Value

toEncoding :: BatchCreateAnnotationsResponse -> Encoding

toJSONList :: [BatchCreateAnnotationsResponse] -> Value

toEncodingList :: [BatchCreateAnnotationsResponse] -> Encoding

FromJSON BatchCreateAnnotationsResponse

Methods

parseJSON :: Value -> Parser BatchCreateAnnotationsResponse

parseJSONList :: Value -> Parser [BatchCreateAnnotationsResponse]

type Rep BatchCreateAnnotationsResponse

type Rep BatchCreateAnnotationsResponse = D1 (MetaData "BatchCreateAnnotationsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "BatchCreateAnnotationsResponse'" PrefixI True) (S1 (MetaSel (Just Symbol "_bcarEntries") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe [Entry]))))

batchCreateAnnotationsResponse :: BatchCreateAnnotationsResponse

Creates a value of BatchCreateAnnotationsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• bcarEntries

bcarEntries :: Lens' BatchCreateAnnotationsResponse [Entry]

The resulting per-annotation entries, ordered consistently with the original request.

CodingSequence

data CodingSequence

Instances

Eq CodingSequence

Methods

(==) :: CodingSequence -> CodingSequence -> Bool

(/=) :: CodingSequence -> CodingSequence -> Bool

Data CodingSequence

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CodingSequence -> c CodingSequence

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CodingSequence

toConstr :: CodingSequence -> Constr

dataTypeOf :: CodingSequence -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c CodingSequence)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CodingSequence)

gmapT :: (forall b. Data b => b -> b) -> CodingSequence -> CodingSequence

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CodingSequence -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CodingSequence -> r

gmapQ :: (forall d. Data d => d -> u) -> CodingSequence -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> CodingSequence -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> CodingSequence -> m CodingSequence

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CodingSequence -> m CodingSequence

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CodingSequence -> m CodingSequence

Show CodingSequence

Methods

showsPrec :: Int -> CodingSequence -> ShowS

show :: CodingSequence -> String

showList :: [CodingSequence] -> ShowS

Generic CodingSequence

Associated Types

type Rep CodingSequence :: * -> *

Methods

from :: CodingSequence -> Rep CodingSequence x

to :: Rep CodingSequence x -> CodingSequence

ToJSON CodingSequence

Methods

toJSON :: CodingSequence -> Value

toEncoding :: CodingSequence -> Encoding

toJSONList :: [CodingSequence] -> Value

toEncodingList :: [CodingSequence] -> Encoding

FromJSON CodingSequence

Methods

parseJSON :: Value -> Parser CodingSequence

parseJSONList :: Value -> Parser [CodingSequence]

type Rep CodingSequence

type Rep CodingSequence = D1 (MetaData "CodingSequence" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "CodingSequence'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_csStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_csEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64))))))

codingSequence :: CodingSequence

Creates a value of CodingSequence with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• csStart
• csEnd

csStart :: Lens' CodingSequence (Maybe Int64)

The start of the coding sequence on this annotation's reference sequence, 0-based inclusive. Note that this position is relative to the reference start, and *not* the containing annotation start.

csEnd :: Lens' CodingSequence (Maybe Int64)

The end of the coding sequence on this annotation's reference sequence, 0-based exclusive. Note that this position is relative to the reference start, and *not* the containing annotation start.

AnnotationType

data AnnotationType

The data type for this annotation. Must match the containing annotation set's type.

Constructors

ATAnnotationTypeUnspecified

ANNOTATION_TYPE_UNSPECIFIED

ATGeneric

GENERIC A `GENERIC` annotation type should be used when no other annotation type will suffice. This represents an untyped annotation of the reference genome.

ATVariant

VARIANT A `VARIANT` annotation type.

ATGene

GENE A `GENE` annotation type represents the existence of a gene at the associated reference coordinates. The start coordinate is typically the gene's transcription start site and the end is typically the end of the gene's last exon.

ATTranscript

TRANSCRIPT A `TRANSCRIPT` annotation type represents the assertion that a particular region of the reference genome may be transcribed as RNA.

Instances

Enum AnnotationType

Methods

succ :: AnnotationType -> AnnotationType

pred :: AnnotationType -> AnnotationType

toEnum :: Int -> AnnotationType

fromEnum :: AnnotationType -> Int

enumFrom :: AnnotationType -> [AnnotationType]

enumFromThen :: AnnotationType -> AnnotationType -> [AnnotationType]

enumFromTo :: AnnotationType -> AnnotationType -> [AnnotationType]

enumFromThenTo :: AnnotationType -> AnnotationType -> AnnotationType -> [AnnotationType]

Eq AnnotationType

Methods

(==) :: AnnotationType -> AnnotationType -> Bool

(/=) :: AnnotationType -> AnnotationType -> Bool

Data AnnotationType

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> AnnotationType -> c AnnotationType

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c AnnotationType

toConstr :: AnnotationType -> Constr

dataTypeOf :: AnnotationType -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c AnnotationType)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c AnnotationType)

gmapT :: (forall b. Data b => b -> b) -> AnnotationType -> AnnotationType

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationType -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationType -> r

gmapQ :: (forall d. Data d => d -> u) -> AnnotationType -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> AnnotationType -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> AnnotationType -> m AnnotationType

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationType -> m AnnotationType

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationType -> m AnnotationType

Ord AnnotationType

Methods

compare :: AnnotationType -> AnnotationType -> Ordering

(<) :: AnnotationType -> AnnotationType -> Bool

(<=) :: AnnotationType -> AnnotationType -> Bool

(>) :: AnnotationType -> AnnotationType -> Bool

(>=) :: AnnotationType -> AnnotationType -> Bool

max :: AnnotationType -> AnnotationType -> AnnotationType

min :: AnnotationType -> AnnotationType -> AnnotationType

Read AnnotationType

Methods

readsPrec :: Int -> ReadS AnnotationType

readList :: ReadS [AnnotationType]

readPrec :: ReadPrec AnnotationType

readListPrec :: ReadPrec [AnnotationType]

Show AnnotationType

Methods

showsPrec :: Int -> AnnotationType -> ShowS

show :: AnnotationType -> String

showList :: [AnnotationType] -> ShowS

Generic AnnotationType

Associated Types

type Rep AnnotationType :: * -> *

Methods

from :: AnnotationType -> Rep AnnotationType x

to :: Rep AnnotationType x -> AnnotationType

Hashable AnnotationType

Methods

hashWithSalt :: Int -> AnnotationType -> Int

hash :: AnnotationType -> Int

ToJSON AnnotationType

Methods

toJSON :: AnnotationType -> Value

toEncoding :: AnnotationType -> Encoding

toJSONList :: [AnnotationType] -> Value

toEncodingList :: [AnnotationType] -> Encoding

FromJSON AnnotationType

Methods

parseJSON :: Value -> Parser AnnotationType

parseJSONList :: Value -> Parser [AnnotationType]

FromHttpApiData AnnotationType

Methods

parseUrlPiece :: Text -> Either Text AnnotationType

parseHeader :: ByteString -> Either Text AnnotationType

parseQueryParam :: Text -> Either Text AnnotationType

ToHttpApiData AnnotationType

Methods

toUrlPiece :: AnnotationType -> Text

toHeader :: AnnotationType -> ByteString

toQueryParam :: AnnotationType -> Text

type Rep AnnotationType

type Rep AnnotationType = D1 (MetaData "AnnotationType" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) ((:+:) ((:+:) (C1 (MetaCons "ATAnnotationTypeUnspecified" PrefixI False) U1) (C1 (MetaCons "ATGeneric" PrefixI False) U1)) ((:+:) (C1 (MetaCons "ATVariant" PrefixI False) U1) ((:+:) (C1 (MetaCons "ATGene" PrefixI False) U1) (C1 (MetaCons "ATTranscript" PrefixI False) U1))))

SearchReferenceSetsResponse

data SearchReferenceSetsResponse

Instances

Eq SearchReferenceSetsResponse

Methods

(==) :: SearchReferenceSetsResponse -> SearchReferenceSetsResponse -> Bool

(/=) :: SearchReferenceSetsResponse -> SearchReferenceSetsResponse -> Bool

Data SearchReferenceSetsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReferenceSetsResponse -> c SearchReferenceSetsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReferenceSetsResponse

toConstr :: SearchReferenceSetsResponse -> Constr

dataTypeOf :: SearchReferenceSetsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReferenceSetsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReferenceSetsResponse)

gmapT :: (forall b. Data b => b -> b) -> SearchReferenceSetsResponse -> SearchReferenceSetsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferenceSetsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferenceSetsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchReferenceSetsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReferenceSetsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReferenceSetsResponse -> m SearchReferenceSetsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferenceSetsResponse -> m SearchReferenceSetsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferenceSetsResponse -> m SearchReferenceSetsResponse

Show SearchReferenceSetsResponse

Methods

showsPrec :: Int -> SearchReferenceSetsResponse -> ShowS

show :: SearchReferenceSetsResponse -> String

showList :: [SearchReferenceSetsResponse] -> ShowS

Generic SearchReferenceSetsResponse

Associated Types

type Rep SearchReferenceSetsResponse :: * -> *

Methods

from :: SearchReferenceSetsResponse -> Rep SearchReferenceSetsResponse x

to :: Rep SearchReferenceSetsResponse x -> SearchReferenceSetsResponse

ToJSON SearchReferenceSetsResponse

Methods

toJSON :: SearchReferenceSetsResponse -> Value

toEncoding :: SearchReferenceSetsResponse -> Encoding

toJSONList :: [SearchReferenceSetsResponse] -> Value

toEncodingList :: [SearchReferenceSetsResponse] -> Encoding

FromJSON SearchReferenceSetsResponse

Methods

parseJSON :: Value -> Parser SearchReferenceSetsResponse

parseJSONList :: Value -> Parser [SearchReferenceSetsResponse]

type Rep SearchReferenceSetsResponse

type Rep SearchReferenceSetsResponse = D1 (MetaData "SearchReferenceSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchReferenceSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_srsrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_srsrReferenceSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ReferenceSet])))))

searchReferenceSetsResponse :: SearchReferenceSetsResponse

Creates a value of SearchReferenceSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• srsrNextPageToken
• srsrReferenceSets

srsrNextPageToken :: Lens' SearchReferenceSetsResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

srsrReferenceSets :: Lens' SearchReferenceSetsResponse [ReferenceSet]

The matching references sets.

Range

data Range

A 0-based half-open genomic coordinate range for search requests.

See: range smart constructor.

Instances

Eq Range

Methods

(==) :: Range -> Range -> Bool

(/=) :: Range -> Range -> Bool

Data Range

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Range -> c Range

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Range

toConstr :: Range -> Constr

dataTypeOf :: Range -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Range)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Range)

gmapT :: (forall b. Data b => b -> b) -> Range -> Range

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Range -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Range -> r

gmapQ :: (forall d. Data d => d -> u) -> Range -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Range -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Range -> m Range

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Range -> m Range

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Range -> m Range

Show Range

Methods

showsPrec :: Int -> Range -> ShowS

show :: Range -> String

showList :: [Range] -> ShowS

Generic Range

Associated Types

type Rep Range :: * -> *

Methods

from :: Range -> Rep Range x

to :: Rep Range x -> Range

ToJSON Range

Methods

toJSON :: Range -> Value

toEncoding :: Range -> Encoding

toJSONList :: [Range] -> Value

toEncodingList :: [Range] -> Encoding

FromJSON Range

Methods

parseJSON :: Value -> Parser Range

parseJSONList :: Value -> Parser [Range]

type Rep Range

type Rep Range = D1 (MetaData "Range" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Range'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_rStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((:*:) (S1 (MetaSel (Just Symbol "_rReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))))))

range :: Range

Creates a value of Range with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• rStart
• rReferenceName
• rEnd

rStart :: Lens' Range (Maybe Int64)

The start position of the range on the reference, 0-based inclusive.

rReferenceName :: Lens' Range (Maybe Text)

The reference sequence name, for example `chr1`, `1`, or `chrX`.

rEnd :: Lens' Range (Maybe Int64)

The end position of the range on the reference, 0-based exclusive.

ReadGroupSet

data ReadGroupSet

A read group set is a logical collection of read groups, which are collections of reads produced by a sequencer. A read group set typically models reads corresponding to one sample, sequenced one way, and aligned one way. * A read group set belongs to one dataset. * A read group belongs to one read group set. * A read belongs to one read group. For more genomics resource definitions, see Fundamentals of Google Genomics

See: readGroupSet smart constructor.

Instances

Eq ReadGroupSet

Methods

(==) :: ReadGroupSet -> ReadGroupSet -> Bool

(/=) :: ReadGroupSet -> ReadGroupSet -> Bool

Data ReadGroupSet

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReadGroupSet -> c ReadGroupSet

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReadGroupSet

toConstr :: ReadGroupSet -> Constr

dataTypeOf :: ReadGroupSet -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ReadGroupSet)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReadGroupSet)

gmapT :: (forall b. Data b => b -> b) -> ReadGroupSet -> ReadGroupSet

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupSet -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupSet -> r

gmapQ :: (forall d. Data d => d -> u) -> ReadGroupSet -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ReadGroupSet -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReadGroupSet -> m ReadGroupSet

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupSet -> m ReadGroupSet

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupSet -> m ReadGroupSet

Show ReadGroupSet

Methods

showsPrec :: Int -> ReadGroupSet -> ShowS

show :: ReadGroupSet -> String

showList :: [ReadGroupSet] -> ShowS

Generic ReadGroupSet

Associated Types

type Rep ReadGroupSet :: * -> *

Methods

from :: ReadGroupSet -> Rep ReadGroupSet x

to :: Rep ReadGroupSet x -> ReadGroupSet

ToJSON ReadGroupSet

Methods

toJSON :: ReadGroupSet -> Value

toEncoding :: ReadGroupSet -> Encoding

toJSONList :: [ReadGroupSet] -> Value

toEncodingList :: [ReadGroupSet] -> Encoding

FromJSON ReadGroupSet

Methods

parseJSON :: Value -> Parser ReadGroupSet

parseJSONList :: Value -> Parser [ReadGroupSet]

type Rep ReadGroupSet

type Rep ReadGroupSet = D1 (MetaData "ReadGroupSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ReadGroupSet'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_rgsReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_rgsName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rgsDataSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_rgsId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rgsInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ReadGroupSetInfo)))) ((:*:) (S1 (MetaSel (Just Symbol "_rgsReadGroups") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ReadGroup]))) (S1 (MetaSel (Just Symbol "_rgsFilename") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

readGroupSet :: ReadGroupSet

Creates a value of ReadGroupSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• rgsReferenceSetId
• rgsName
• rgsDataSetId
• rgsId
• rgsInfo
• rgsReadGroups
• rgsFilename

rgsReferenceSetId :: Lens' ReadGroupSet (Maybe Text)

The reference set to which the reads in this read group set are aligned.

rgsName :: Lens' ReadGroupSet (Maybe Text)

The read group set name. By default this will be initialized to the sample name of the sequenced data contained in this set.

rgsDataSetId :: Lens' ReadGroupSet (Maybe Text)

The dataset to which this read group set belongs.

rgsId :: Lens' ReadGroupSet (Maybe Text)

The server-generated read group set ID, unique for all read group sets.

rgsInfo :: Lens' ReadGroupSet (Maybe ReadGroupSetInfo)

A map of additional read group set information.

rgsReadGroups :: Lens' ReadGroupSet [ReadGroup]

The read groups in this set. There are typically 1-10 read groups in a read group set.

rgsFilename :: Lens' ReadGroupSet (Maybe Text)

The filename of the original source file for this read group set, if any.

Xgafv

data Xgafv

V1 error format.

Constructors

X1

1 v1 error format

X2

2 v2 error format

Instances

Enum Xgafv

Methods

succ :: Xgafv -> Xgafv

pred :: Xgafv -> Xgafv

toEnum :: Int -> Xgafv

fromEnum :: Xgafv -> Int

enumFrom :: Xgafv -> [Xgafv]

enumFromThen :: Xgafv -> Xgafv -> [Xgafv]

enumFromTo :: Xgafv -> Xgafv -> [Xgafv]

enumFromThenTo :: Xgafv -> Xgafv -> Xgafv -> [Xgafv]

Eq Xgafv

Methods

(==) :: Xgafv -> Xgafv -> Bool

(/=) :: Xgafv -> Xgafv -> Bool

Data Xgafv

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Xgafv -> c Xgafv

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Xgafv

toConstr :: Xgafv -> Constr

dataTypeOf :: Xgafv -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Xgafv)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Xgafv)

gmapT :: (forall b. Data b => b -> b) -> Xgafv -> Xgafv

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Xgafv -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Xgafv -> r

gmapQ :: (forall d. Data d => d -> u) -> Xgafv -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Xgafv -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Xgafv -> m Xgafv

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Xgafv -> m Xgafv

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Xgafv -> m Xgafv

Ord Xgafv

Methods

compare :: Xgafv -> Xgafv -> Ordering

(<) :: Xgafv -> Xgafv -> Bool

(<=) :: Xgafv -> Xgafv -> Bool

(>) :: Xgafv -> Xgafv -> Bool

(>=) :: Xgafv -> Xgafv -> Bool

max :: Xgafv -> Xgafv -> Xgafv

min :: Xgafv -> Xgafv -> Xgafv

Read Xgafv

Methods

readsPrec :: Int -> ReadS Xgafv

readList :: ReadS [Xgafv]

readPrec :: ReadPrec Xgafv

readListPrec :: ReadPrec [Xgafv]

Show Xgafv

Methods

showsPrec :: Int -> Xgafv -> ShowS

show :: Xgafv -> String

showList :: [Xgafv] -> ShowS

Generic Xgafv

Associated Types

type Rep Xgafv :: * -> *

Methods

from :: Xgafv -> Rep Xgafv x

to :: Rep Xgafv x -> Xgafv

Hashable Xgafv

Methods

hashWithSalt :: Int -> Xgafv -> Int

hash :: Xgafv -> Int

ToJSON Xgafv

Methods

toJSON :: Xgafv -> Value

toEncoding :: Xgafv -> Encoding

toJSONList :: [Xgafv] -> Value

toEncodingList :: [Xgafv] -> Encoding

FromJSON Xgafv

Methods

parseJSON :: Value -> Parser Xgafv

parseJSONList :: Value -> Parser [Xgafv]

FromHttpApiData Xgafv

Methods

parseUrlPiece :: Text -> Either Text Xgafv

parseHeader :: ByteString -> Either Text Xgafv

parseQueryParam :: Text -> Either Text Xgafv

ToHttpApiData Xgafv

Methods

toUrlPiece :: Xgafv -> Text

toHeader :: Xgafv -> ByteString

toQueryParam :: Xgafv -> Text

type Rep Xgafv

type Rep Xgafv = D1 (MetaData "Xgafv" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) ((:+:) (C1 (MetaCons "X1" PrefixI False) U1) (C1 (MetaCons "X2" PrefixI False) U1))

ExportReadGroupSetRequest

data ExportReadGroupSetRequest

The read group set export request.

See: exportReadGroupSetRequest smart constructor.

Instances

Eq ExportReadGroupSetRequest

Methods

(==) :: ExportReadGroupSetRequest -> ExportReadGroupSetRequest -> Bool

(/=) :: ExportReadGroupSetRequest -> ExportReadGroupSetRequest -> Bool

Data ExportReadGroupSetRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ExportReadGroupSetRequest -> c ExportReadGroupSetRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ExportReadGroupSetRequest

toConstr :: ExportReadGroupSetRequest -> Constr

dataTypeOf :: ExportReadGroupSetRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ExportReadGroupSetRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ExportReadGroupSetRequest)

gmapT :: (forall b. Data b => b -> b) -> ExportReadGroupSetRequest -> ExportReadGroupSetRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ExportReadGroupSetRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ExportReadGroupSetRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> ExportReadGroupSetRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ExportReadGroupSetRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ExportReadGroupSetRequest -> m ExportReadGroupSetRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportReadGroupSetRequest -> m ExportReadGroupSetRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportReadGroupSetRequest -> m ExportReadGroupSetRequest

Show ExportReadGroupSetRequest

Methods

showsPrec :: Int -> ExportReadGroupSetRequest -> ShowS

show :: ExportReadGroupSetRequest -> String

showList :: [ExportReadGroupSetRequest] -> ShowS

Generic ExportReadGroupSetRequest

Associated Types

type Rep ExportReadGroupSetRequest :: * -> *

Methods

from :: ExportReadGroupSetRequest -> Rep ExportReadGroupSetRequest x

to :: Rep ExportReadGroupSetRequest x -> ExportReadGroupSetRequest

ToJSON ExportReadGroupSetRequest

Methods

toJSON :: ExportReadGroupSetRequest -> Value

toEncoding :: ExportReadGroupSetRequest -> Encoding

toJSONList :: [ExportReadGroupSetRequest] -> Value

toEncodingList :: [ExportReadGroupSetRequest] -> Encoding

FromJSON ExportReadGroupSetRequest

Methods

parseJSON :: Value -> Parser ExportReadGroupSetRequest

parseJSONList :: Value -> Parser [ExportReadGroupSetRequest]

type Rep ExportReadGroupSetRequest

type Rep ExportReadGroupSetRequest = D1 (MetaData "ExportReadGroupSetRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ExportReadGroupSetRequest'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_ergsrReferenceNames") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) ((:*:) (S1 (MetaSel (Just Symbol "_ergsrExportURI") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ergsrProjectId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

exportReadGroupSetRequest :: ExportReadGroupSetRequest

Creates a value of ExportReadGroupSetRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• ergsrReferenceNames
• ergsrExportURI
• ergsrProjectId

ergsrReferenceNames :: Lens' ExportReadGroupSetRequest [Text]

The reference names to export. If this is not specified, all reference sequences, including unmapped reads, are exported. Use `*` to export only unmapped reads.

ergsrExportURI :: Lens' ExportReadGroupSetRequest (Maybe Text)

Required. A Google Cloud Storage URI for the exported BAM file. The currently authenticated user must have write access to the new file. An error will be returned if the URI already contains data.

ergsrProjectId :: Lens' ExportReadGroupSetRequest (Maybe Text)

Required. The Google Cloud project ID that owns this export. The caller must have WRITE access to this project.

ImportVariantsResponse

data ImportVariantsResponse

The variant data import response.

See: importVariantsResponse smart constructor.

Instances

Eq ImportVariantsResponse

Methods

(==) :: ImportVariantsResponse -> ImportVariantsResponse -> Bool

(/=) :: ImportVariantsResponse -> ImportVariantsResponse -> Bool

Data ImportVariantsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportVariantsResponse -> c ImportVariantsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportVariantsResponse

toConstr :: ImportVariantsResponse -> Constr

dataTypeOf :: ImportVariantsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ImportVariantsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportVariantsResponse)

gmapT :: (forall b. Data b => b -> b) -> ImportVariantsResponse -> ImportVariantsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> ImportVariantsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportVariantsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportVariantsResponse -> m ImportVariantsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsResponse -> m ImportVariantsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsResponse -> m ImportVariantsResponse

Show ImportVariantsResponse

Methods

showsPrec :: Int -> ImportVariantsResponse -> ShowS

show :: ImportVariantsResponse -> String

showList :: [ImportVariantsResponse] -> ShowS

Generic ImportVariantsResponse

Associated Types

type Rep ImportVariantsResponse :: * -> *

Methods

from :: ImportVariantsResponse -> Rep ImportVariantsResponse x

to :: Rep ImportVariantsResponse x -> ImportVariantsResponse

ToJSON ImportVariantsResponse

Methods

toJSON :: ImportVariantsResponse -> Value

toEncoding :: ImportVariantsResponse -> Encoding

toJSONList :: [ImportVariantsResponse] -> Value

toEncodingList :: [ImportVariantsResponse] -> Encoding

FromJSON ImportVariantsResponse

Methods

parseJSON :: Value -> Parser ImportVariantsResponse

parseJSONList :: Value -> Parser [ImportVariantsResponse]

type Rep ImportVariantsResponse

type Rep ImportVariantsResponse = D1 (MetaData "ImportVariantsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "ImportVariantsResponse'" PrefixI True) (S1 (MetaSel (Just Symbol "_ivrCallSetIds") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe [Text]))))

importVariantsResponse :: ImportVariantsResponse

Creates a value of ImportVariantsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• ivrCallSetIds

ivrCallSetIds :: Lens' ImportVariantsResponse [Text]

IDs of the call sets created during the import.

ListCoverageBucketsResponse

data ListCoverageBucketsResponse

Instances

Eq ListCoverageBucketsResponse

Methods

(==) :: ListCoverageBucketsResponse -> ListCoverageBucketsResponse -> Bool

(/=) :: ListCoverageBucketsResponse -> ListCoverageBucketsResponse -> Bool

Data ListCoverageBucketsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ListCoverageBucketsResponse -> c ListCoverageBucketsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ListCoverageBucketsResponse

toConstr :: ListCoverageBucketsResponse -> Constr

dataTypeOf :: ListCoverageBucketsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ListCoverageBucketsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ListCoverageBucketsResponse)

gmapT :: (forall b. Data b => b -> b) -> ListCoverageBucketsResponse -> ListCoverageBucketsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ListCoverageBucketsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ListCoverageBucketsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> ListCoverageBucketsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ListCoverageBucketsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ListCoverageBucketsResponse -> m ListCoverageBucketsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ListCoverageBucketsResponse -> m ListCoverageBucketsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ListCoverageBucketsResponse -> m ListCoverageBucketsResponse

Show ListCoverageBucketsResponse

Methods

showsPrec :: Int -> ListCoverageBucketsResponse -> ShowS

show :: ListCoverageBucketsResponse -> String

showList :: [ListCoverageBucketsResponse] -> ShowS

Generic ListCoverageBucketsResponse

Associated Types

type Rep ListCoverageBucketsResponse :: * -> *

Methods

from :: ListCoverageBucketsResponse -> Rep ListCoverageBucketsResponse x

to :: Rep ListCoverageBucketsResponse x -> ListCoverageBucketsResponse

ToJSON ListCoverageBucketsResponse

Methods

toJSON :: ListCoverageBucketsResponse -> Value

toEncoding :: ListCoverageBucketsResponse -> Encoding

toJSONList :: [ListCoverageBucketsResponse] -> Value

toEncodingList :: [ListCoverageBucketsResponse] -> Encoding

FromJSON ListCoverageBucketsResponse

Methods

parseJSON :: Value -> Parser ListCoverageBucketsResponse

parseJSONList :: Value -> Parser [ListCoverageBucketsResponse]

type Rep ListCoverageBucketsResponse

type Rep ListCoverageBucketsResponse = D1 (MetaData "ListCoverageBucketsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ListCoverageBucketsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_lcbrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_lcbrBucketWidth") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_lcbrCoverageBuckets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [CoverageBucket]))))))

listCoverageBucketsResponse :: ListCoverageBucketsResponse

Creates a value of ListCoverageBucketsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• lcbrNextPageToken
• lcbrBucketWidth
• lcbrCoverageBuckets

lcbrNextPageToken :: Lens' ListCoverageBucketsResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

lcbrBucketWidth :: Lens' ListCoverageBucketsResponse (Maybe Int64)

The length of each coverage bucket in base pairs. Note that buckets at the end of a reference sequence may be shorter. This value is omitted if the bucket width is infinity (the default behaviour, with no range or `targetBucketWidth`).

lcbrCoverageBuckets :: Lens' ListCoverageBucketsResponse [CoverageBucket]

The coverage buckets. The list of buckets is sparse; a bucket with 0 overlapping reads is not returned. A bucket never crosses more than one reference sequence. Each bucket has width `bucketWidth`, unless its end is the end of the reference sequence.

TestIAMPermissionsRequest

data TestIAMPermissionsRequest

Request message for `TestIamPermissions` method.

See: testIAMPermissionsRequest smart constructor.

Instances

Eq TestIAMPermissionsRequest

Methods

(==) :: TestIAMPermissionsRequest -> TestIAMPermissionsRequest -> Bool

(/=) :: TestIAMPermissionsRequest -> TestIAMPermissionsRequest -> Bool

Data TestIAMPermissionsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> TestIAMPermissionsRequest -> c TestIAMPermissionsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c TestIAMPermissionsRequest

toConstr :: TestIAMPermissionsRequest -> Constr

dataTypeOf :: TestIAMPermissionsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c TestIAMPermissionsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c TestIAMPermissionsRequest)

gmapT :: (forall b. Data b => b -> b) -> TestIAMPermissionsRequest -> TestIAMPermissionsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> TestIAMPermissionsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> TestIAMPermissionsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> TestIAMPermissionsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> TestIAMPermissionsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> TestIAMPermissionsRequest -> m TestIAMPermissionsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> TestIAMPermissionsRequest -> m TestIAMPermissionsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> TestIAMPermissionsRequest -> m TestIAMPermissionsRequest

Show TestIAMPermissionsRequest

Methods

showsPrec :: Int -> TestIAMPermissionsRequest -> ShowS

show :: TestIAMPermissionsRequest -> String

showList :: [TestIAMPermissionsRequest] -> ShowS

Generic TestIAMPermissionsRequest

Associated Types

type Rep TestIAMPermissionsRequest :: * -> *

Methods

from :: TestIAMPermissionsRequest -> Rep TestIAMPermissionsRequest x

to :: Rep TestIAMPermissionsRequest x -> TestIAMPermissionsRequest

ToJSON TestIAMPermissionsRequest

Methods

toJSON :: TestIAMPermissionsRequest -> Value

toEncoding :: TestIAMPermissionsRequest -> Encoding

toJSONList :: [TestIAMPermissionsRequest] -> Value

toEncodingList :: [TestIAMPermissionsRequest] -> Encoding

FromJSON TestIAMPermissionsRequest

Methods

parseJSON :: Value -> Parser TestIAMPermissionsRequest

parseJSONList :: Value -> Parser [TestIAMPermissionsRequest]

type Rep TestIAMPermissionsRequest

type Rep TestIAMPermissionsRequest = D1 (MetaData "TestIAMPermissionsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "TestIAMPermissionsRequest'" PrefixI True) (S1 (MetaSel (Just Symbol "_tiprPermissions") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe [Text]))))

testIAMPermissionsRequest :: TestIAMPermissionsRequest

Creates a value of TestIAMPermissionsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• tiprPermissions

tiprPermissions :: Lens' TestIAMPermissionsRequest [Text]

REQUIRED: The set of permissions to check for the 'resource'. Permissions with wildcards (such as '*' or 'storage.*') are not allowed. Allowed permissions are: * `genomics.datasets.create` * `genomics.datasets.delete` * `genomics.datasets.get` * `genomics.datasets.list` * `genomics.datasets.update` * `genomics.datasets.getIamPolicy` * `genomics.datasets.setIamPolicy`

ImportReadGroupSetsResponse

data ImportReadGroupSetsResponse

The read group set import response.

See: importReadGroupSetsResponse smart constructor.

Instances

Eq ImportReadGroupSetsResponse

Methods

(==) :: ImportReadGroupSetsResponse -> ImportReadGroupSetsResponse -> Bool

(/=) :: ImportReadGroupSetsResponse -> ImportReadGroupSetsResponse -> Bool

Data ImportReadGroupSetsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportReadGroupSetsResponse -> c ImportReadGroupSetsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportReadGroupSetsResponse

toConstr :: ImportReadGroupSetsResponse -> Constr

dataTypeOf :: ImportReadGroupSetsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ImportReadGroupSetsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportReadGroupSetsResponse)

gmapT :: (forall b. Data b => b -> b) -> ImportReadGroupSetsResponse -> ImportReadGroupSetsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> ImportReadGroupSetsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportReadGroupSetsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsResponse -> m ImportReadGroupSetsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsResponse -> m ImportReadGroupSetsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsResponse -> m ImportReadGroupSetsResponse

Show ImportReadGroupSetsResponse

Methods

showsPrec :: Int -> ImportReadGroupSetsResponse -> ShowS

show :: ImportReadGroupSetsResponse -> String

showList :: [ImportReadGroupSetsResponse] -> ShowS

Generic ImportReadGroupSetsResponse

Associated Types

type Rep ImportReadGroupSetsResponse :: * -> *

Methods

from :: ImportReadGroupSetsResponse -> Rep ImportReadGroupSetsResponse x

to :: Rep ImportReadGroupSetsResponse x -> ImportReadGroupSetsResponse

ToJSON ImportReadGroupSetsResponse

Methods

toJSON :: ImportReadGroupSetsResponse -> Value

toEncoding :: ImportReadGroupSetsResponse -> Encoding

toJSONList :: [ImportReadGroupSetsResponse] -> Value

toEncodingList :: [ImportReadGroupSetsResponse] -> Encoding

FromJSON ImportReadGroupSetsResponse

Methods

parseJSON :: Value -> Parser ImportReadGroupSetsResponse

parseJSONList :: Value -> Parser [ImportReadGroupSetsResponse]

type Rep ImportReadGroupSetsResponse

type Rep ImportReadGroupSetsResponse = D1 (MetaData "ImportReadGroupSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "ImportReadGroupSetsResponse'" PrefixI True) (S1 (MetaSel (Just Symbol "_irgsrReadGroupSetIds") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe [Text]))))

importReadGroupSetsResponse :: ImportReadGroupSetsResponse

Creates a value of ImportReadGroupSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• irgsrReadGroupSetIds

irgsrReadGroupSetIds :: Lens' ImportReadGroupSetsResponse [Text]

IDs of the read group sets that were created.

LinearAlignment

data LinearAlignment

A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

See: linearAlignment smart constructor.

Instances

Eq LinearAlignment

Methods

(==) :: LinearAlignment -> LinearAlignment -> Bool

(/=) :: LinearAlignment -> LinearAlignment -> Bool

Data LinearAlignment

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> LinearAlignment -> c LinearAlignment

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c LinearAlignment

toConstr :: LinearAlignment -> Constr

dataTypeOf :: LinearAlignment -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c LinearAlignment)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c LinearAlignment)

gmapT :: (forall b. Data b => b -> b) -> LinearAlignment -> LinearAlignment

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> LinearAlignment -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> LinearAlignment -> r

gmapQ :: (forall d. Data d => d -> u) -> LinearAlignment -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> LinearAlignment -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> LinearAlignment -> m LinearAlignment

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> LinearAlignment -> m LinearAlignment

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> LinearAlignment -> m LinearAlignment

Show LinearAlignment

Methods

showsPrec :: Int -> LinearAlignment -> ShowS

show :: LinearAlignment -> String

showList :: [LinearAlignment] -> ShowS

Generic LinearAlignment

Associated Types

type Rep LinearAlignment :: * -> *

Methods

from :: LinearAlignment -> Rep LinearAlignment x

to :: Rep LinearAlignment x -> LinearAlignment

ToJSON LinearAlignment

Methods

toJSON :: LinearAlignment -> Value

toEncoding :: LinearAlignment -> Encoding

toJSONList :: [LinearAlignment] -> Value

toEncodingList :: [LinearAlignment] -> Encoding

FromJSON LinearAlignment

Methods

parseJSON :: Value -> Parser LinearAlignment

parseJSONList :: Value -> Parser [LinearAlignment]

type Rep LinearAlignment

type Rep LinearAlignment = D1 (MetaData "LinearAlignment" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "LinearAlignment'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_laCigar") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [CigarUnit]))) ((:*:) (S1 (MetaSel (Just Symbol "_laMAppingQuality") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_laPosition") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Position))))))

linearAlignment :: LinearAlignment

Creates a value of LinearAlignment with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• laCigar
• laMAppingQuality
• laPosition

laCigar :: Lens' LinearAlignment [CigarUnit]

Represents the local alignment of this sequence (alignment matches, indels, etc) against the reference.

laMAppingQuality :: Lens' LinearAlignment (Maybe Int32)

The mapping quality of this alignment. Represents how likely the read maps to this position as opposed to other locations. Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to the nearest integer.

laPosition :: Lens' LinearAlignment (Maybe Position)

The position of this alignment.

AnnotationSet

data AnnotationSet

An annotation set is a logical grouping of annotations that share consistent type information and provenance. Examples of annotation sets include 'all genes from refseq', and 'all variant annotations from ClinVar'.

See: annotationSet smart constructor.

Instances

Eq AnnotationSet

Methods

(==) :: AnnotationSet -> AnnotationSet -> Bool

(/=) :: AnnotationSet -> AnnotationSet -> Bool

Data AnnotationSet

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> AnnotationSet -> c AnnotationSet

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c AnnotationSet

toConstr :: AnnotationSet -> Constr

dataTypeOf :: AnnotationSet -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c AnnotationSet)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c AnnotationSet)

gmapT :: (forall b. Data b => b -> b) -> AnnotationSet -> AnnotationSet

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSet -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSet -> r

gmapQ :: (forall d. Data d => d -> u) -> AnnotationSet -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> AnnotationSet -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> AnnotationSet -> m AnnotationSet

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSet -> m AnnotationSet

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSet -> m AnnotationSet

Show AnnotationSet

Methods

showsPrec :: Int -> AnnotationSet -> ShowS

show :: AnnotationSet -> String

showList :: [AnnotationSet] -> ShowS

Generic AnnotationSet

Associated Types

type Rep AnnotationSet :: * -> *

Methods

from :: AnnotationSet -> Rep AnnotationSet x

to :: Rep AnnotationSet x -> AnnotationSet

ToJSON AnnotationSet

Methods

toJSON :: AnnotationSet -> Value

toEncoding :: AnnotationSet -> Encoding

toJSONList :: [AnnotationSet] -> Value

toEncodingList :: [AnnotationSet] -> Encoding

FromJSON AnnotationSet

Methods

parseJSON :: Value -> Parser AnnotationSet

parseJSONList :: Value -> Parser [AnnotationSet]

type Rep AnnotationSet

type Rep AnnotationSet = D1 (MetaData "AnnotationSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "AnnotationSet'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_asReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_asName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_asDataSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_asId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_asType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe AnnotationSetType)))) ((:*:) (S1 (MetaSel (Just Symbol "_asSourceURI") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_asInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe AnnotationSetInfo)))))))

annotationSet :: AnnotationSet

Creates a value of AnnotationSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• asReferenceSetId
• asName
• asDataSetId
• asId
• asType
• asSourceURI
• asInfo

asReferenceSetId :: Lens' AnnotationSet (Maybe Text)

The ID of the reference set that defines the coordinate space for this set's annotations.

asName :: Lens' AnnotationSet (Maybe Text)

The display name for this annotation set.

asDataSetId :: Lens' AnnotationSet (Maybe Text)

The dataset to which this annotation set belongs.

asId :: Lens' AnnotationSet (Maybe Text)

The server-generated annotation set ID, unique across all annotation sets.

asType :: Lens' AnnotationSet (Maybe AnnotationSetType)

The type of annotations contained within this set.

asSourceURI :: Lens' AnnotationSet (Maybe Text)

The source URI describing the file from which this annotation set was generated, if any.

asInfo :: Lens' AnnotationSet (Maybe AnnotationSetInfo)

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

VariantSet

data VariantSet

A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset. For more genomics resource definitions, see Fundamentals of Google Genomics

See: variantSet smart constructor.

Instances

Eq VariantSet

Methods

(==) :: VariantSet -> VariantSet -> Bool

(/=) :: VariantSet -> VariantSet -> Bool

Data VariantSet

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantSet -> c VariantSet

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantSet

toConstr :: VariantSet -> Constr

dataTypeOf :: VariantSet -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantSet)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantSet)

gmapT :: (forall b. Data b => b -> b) -> VariantSet -> VariantSet

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantSet -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantSet -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantSet -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantSet -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantSet -> m VariantSet

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSet -> m VariantSet

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSet -> m VariantSet

Show VariantSet

Methods

showsPrec :: Int -> VariantSet -> ShowS

show :: VariantSet -> String

showList :: [VariantSet] -> ShowS

Generic VariantSet

Associated Types

type Rep VariantSet :: * -> *

Methods

from :: VariantSet -> Rep VariantSet x

to :: Rep VariantSet x -> VariantSet

ToJSON VariantSet

Methods

toJSON :: VariantSet -> Value

toEncoding :: VariantSet -> Encoding

toJSONList :: [VariantSet] -> Value

toEncodingList :: [VariantSet] -> Encoding

FromJSON VariantSet

Methods

parseJSON :: Value -> Parser VariantSet

parseJSONList :: Value -> Parser [VariantSet]

type Rep VariantSet

type Rep VariantSet = D1 (MetaData "VariantSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "VariantSet'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_vsReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_vsName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vsDataSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_vsReferenceBounds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ReferenceBound]))) (S1 (MetaSel (Just Symbol "_vsMetadata") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [VariantSetMetadata])))) ((:*:) (S1 (MetaSel (Just Symbol "_vsId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vsDescription") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

variantSet :: VariantSet

Creates a value of VariantSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• vsReferenceSetId
• vsName
• vsDataSetId
• vsReferenceBounds
• vsMetadata
• vsId
• vsDescription

vsReferenceSetId :: Lens' VariantSet (Maybe Text)

The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.

vsName :: Lens' VariantSet (Maybe Text)

User-specified, mutable name.

vsDataSetId :: Lens' VariantSet (Maybe Text)

The dataset to which this variant set belongs.

vsReferenceBounds :: Lens' VariantSet [ReferenceBound]

A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.

vsMetadata :: Lens' VariantSet [VariantSetMetadata]

The metadata associated with this variant set.

vsId :: Lens' VariantSet (Maybe Text)

The server-generated variant set ID, unique across all variant sets.

vsDescription :: Lens' VariantSet (Maybe Text)

A textual description of this variant set.

CigarUnitOperation

data CigarUnitOperation

Constructors

OperationUnspecified

OPERATION_UNSPECIFIED

AlignmentMatch

ALIGNMENT_MATCH An alignment match indicates that a sequence can be aligned to the reference without evidence of an INDEL. Unlike the `SEQUENCE_MATCH` and `SEQUENCE_MISMATCH` operators, the `ALIGNMENT_MATCH` operator does not indicate whether the reference and read sequences are an exact match. This operator is equivalent to SAM's `M`.

Insert

INSERT The insert operator indicates that the read contains evidence of bases being inserted into the reference. This operator is equivalent to SAM's `I`.

Delete'

DELETE The delete operator indicates that the read contains evidence of bases being deleted from the reference. This operator is equivalent to SAM's `D`.

Skip

SKIP The skip operator indicates that this read skips a long segment of the reference, but the bases have not been deleted. This operator is commonly used when working with RNA-seq data, where reads may skip long segments of the reference between exons. This operator is equivalent to SAM's `N`.

ClipSoft

CLIP_SOFT The soft clip operator indicates that bases at the start/end of a read have not been considered during alignment. This may occur if the majority of a read maps, except for low quality bases at the start/end of a read. This operator is equivalent to SAM's `S`. Bases that are soft clipped will still be stored in the read.

ClipHard

CLIP_HARD The hard clip operator indicates that bases at the start/end of a read have been omitted from this alignment. This may occur if this linear alignment is part of a chimeric alignment, or if the read has been trimmed (for example, during error correction or to trim poly-A tails for RNA-seq). This operator is equivalent to SAM's `H`.

Pad

PAD The pad operator indicates that there is padding in an alignment. This operator is equivalent to SAM's `P`.

SequenceMatch

SEQUENCE_MATCH This operator indicates that this portion of the aligned sequence exactly matches the reference. This operator is equivalent to SAM's `=`.

SequenceMismatch

SEQUENCE_MISMATCH This operator indicates that this portion of the aligned sequence is an alignment match to the reference, but a sequence mismatch. This can indicate a SNP or a read error. This operator is equivalent to SAM's `X`.

Instances

Enum CigarUnitOperation

Methods

succ :: CigarUnitOperation -> CigarUnitOperation

pred :: CigarUnitOperation -> CigarUnitOperation

toEnum :: Int -> CigarUnitOperation

fromEnum :: CigarUnitOperation -> Int

enumFrom :: CigarUnitOperation -> [CigarUnitOperation]

enumFromThen :: CigarUnitOperation -> CigarUnitOperation -> [CigarUnitOperation]

enumFromTo :: CigarUnitOperation -> CigarUnitOperation -> [CigarUnitOperation]

enumFromThenTo :: CigarUnitOperation -> CigarUnitOperation -> CigarUnitOperation -> [CigarUnitOperation]

Eq CigarUnitOperation

Methods

(==) :: CigarUnitOperation -> CigarUnitOperation -> Bool

(/=) :: CigarUnitOperation -> CigarUnitOperation -> Bool

Data CigarUnitOperation

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CigarUnitOperation -> c CigarUnitOperation

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CigarUnitOperation

toConstr :: CigarUnitOperation -> Constr

dataTypeOf :: CigarUnitOperation -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c CigarUnitOperation)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CigarUnitOperation)

gmapT :: (forall b. Data b => b -> b) -> CigarUnitOperation -> CigarUnitOperation

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CigarUnitOperation -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CigarUnitOperation -> r

gmapQ :: (forall d. Data d => d -> u) -> CigarUnitOperation -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> CigarUnitOperation -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> CigarUnitOperation -> m CigarUnitOperation

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CigarUnitOperation -> m CigarUnitOperation

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CigarUnitOperation -> m CigarUnitOperation

Ord CigarUnitOperation

Methods

compare :: CigarUnitOperation -> CigarUnitOperation -> Ordering

(<) :: CigarUnitOperation -> CigarUnitOperation -> Bool

(<=) :: CigarUnitOperation -> CigarUnitOperation -> Bool

(>) :: CigarUnitOperation -> CigarUnitOperation -> Bool

(>=) :: CigarUnitOperation -> CigarUnitOperation -> Bool

max :: CigarUnitOperation -> CigarUnitOperation -> CigarUnitOperation

min :: CigarUnitOperation -> CigarUnitOperation -> CigarUnitOperation

Read CigarUnitOperation

Methods

readsPrec :: Int -> ReadS CigarUnitOperation

readList :: ReadS [CigarUnitOperation]

readPrec :: ReadPrec CigarUnitOperation

readListPrec :: ReadPrec [CigarUnitOperation]

Show CigarUnitOperation

Methods

showsPrec :: Int -> CigarUnitOperation -> ShowS

show :: CigarUnitOperation -> String

showList :: [CigarUnitOperation] -> ShowS

Generic CigarUnitOperation

Associated Types

type Rep CigarUnitOperation :: * -> *

Methods

from :: CigarUnitOperation -> Rep CigarUnitOperation x

to :: Rep CigarUnitOperation x -> CigarUnitOperation

Hashable CigarUnitOperation

Methods

hashWithSalt :: Int -> CigarUnitOperation -> Int

hash :: CigarUnitOperation -> Int

ToJSON CigarUnitOperation

Methods

toJSON :: CigarUnitOperation -> Value

toEncoding :: CigarUnitOperation -> Encoding

toJSONList :: [CigarUnitOperation] -> Value

toEncodingList :: [CigarUnitOperation] -> Encoding

FromJSON CigarUnitOperation

Methods

parseJSON :: Value -> Parser CigarUnitOperation

parseJSONList :: Value -> Parser [CigarUnitOperation]

FromHttpApiData CigarUnitOperation

Methods

parseUrlPiece :: Text -> Either Text CigarUnitOperation

parseHeader :: ByteString -> Either Text CigarUnitOperation

parseQueryParam :: Text -> Either Text CigarUnitOperation

ToHttpApiData CigarUnitOperation

Methods

toUrlPiece :: CigarUnitOperation -> Text

toHeader :: CigarUnitOperation -> ByteString

toQueryParam :: CigarUnitOperation -> Text

type Rep CigarUnitOperation

type Rep CigarUnitOperation = D1 (MetaData "CigarUnitOperation" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) ((:+:) ((:+:) ((:+:) (C1 (MetaCons "OperationUnspecified" PrefixI False) U1) (C1 (MetaCons "AlignmentMatch" PrefixI False) U1)) ((:+:) (C1 (MetaCons "Insert" PrefixI False) U1) ((:+:) (C1 (MetaCons "Delete'" PrefixI False) U1) (C1 (MetaCons "Skip" PrefixI False) U1)))) ((:+:) ((:+:) (C1 (MetaCons "ClipSoft" PrefixI False) U1) (C1 (MetaCons "ClipHard" PrefixI False) U1)) ((:+:) (C1 (MetaCons "Pad" PrefixI False) U1) ((:+:) (C1 (MetaCons "SequenceMatch" PrefixI False) U1) (C1 (MetaCons "SequenceMismatch" PrefixI False) U1)))))

VariantSetMetadataType

data VariantSetMetadataType

The type of data. Possible types include: Integer, Float, Flag, Character, and String.

Constructors

TypeUnspecified

TYPE_UNSPECIFIED

Integer

INTEGER

Float

FLOAT

Flag

FLAG

Character

CHARACTER

String

STRING

Instances

Enum VariantSetMetadataType

Methods

succ :: VariantSetMetadataType -> VariantSetMetadataType

pred :: VariantSetMetadataType -> VariantSetMetadataType

toEnum :: Int -> VariantSetMetadataType

fromEnum :: VariantSetMetadataType -> Int

enumFrom :: VariantSetMetadataType -> [VariantSetMetadataType]

enumFromThen :: VariantSetMetadataType -> VariantSetMetadataType -> [VariantSetMetadataType]

enumFromTo :: VariantSetMetadataType -> VariantSetMetadataType -> [VariantSetMetadataType]

enumFromThenTo :: VariantSetMetadataType -> VariantSetMetadataType -> VariantSetMetadataType -> [VariantSetMetadataType]

Eq VariantSetMetadataType

Methods

(==) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool

(/=) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool

Data VariantSetMetadataType

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantSetMetadataType -> c VariantSetMetadataType

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantSetMetadataType

toConstr :: VariantSetMetadataType -> Constr

dataTypeOf :: VariantSetMetadataType -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantSetMetadataType)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantSetMetadataType)

gmapT :: (forall b. Data b => b -> b) -> VariantSetMetadataType -> VariantSetMetadataType

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadataType -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadataType -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantSetMetadataType -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantSetMetadataType -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantSetMetadataType -> m VariantSetMetadataType

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadataType -> m VariantSetMetadataType

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadataType -> m VariantSetMetadataType

Ord VariantSetMetadataType

Methods

compare :: VariantSetMetadataType -> VariantSetMetadataType -> Ordering

(<) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool

(<=) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool

(>) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool

(>=) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool

max :: VariantSetMetadataType -> VariantSetMetadataType -> VariantSetMetadataType

min :: VariantSetMetadataType -> VariantSetMetadataType -> VariantSetMetadataType

Read VariantSetMetadataType

Methods

readsPrec :: Int -> ReadS VariantSetMetadataType

readList :: ReadS [VariantSetMetadataType]

readPrec :: ReadPrec VariantSetMetadataType

readListPrec :: ReadPrec [VariantSetMetadataType]

Show VariantSetMetadataType

Methods

showsPrec :: Int -> VariantSetMetadataType -> ShowS

show :: VariantSetMetadataType -> String

showList :: [VariantSetMetadataType] -> ShowS

Generic VariantSetMetadataType

Associated Types

type Rep VariantSetMetadataType :: * -> *

Methods

from :: VariantSetMetadataType -> Rep VariantSetMetadataType x

to :: Rep VariantSetMetadataType x -> VariantSetMetadataType

Hashable VariantSetMetadataType

Methods

hashWithSalt :: Int -> VariantSetMetadataType -> Int

hash :: VariantSetMetadataType -> Int

ToJSON VariantSetMetadataType

Methods

toJSON :: VariantSetMetadataType -> Value

toEncoding :: VariantSetMetadataType -> Encoding

toJSONList :: [VariantSetMetadataType] -> Value

toEncodingList :: [VariantSetMetadataType] -> Encoding

FromJSON VariantSetMetadataType

Methods

parseJSON :: Value -> Parser VariantSetMetadataType

parseJSONList :: Value -> Parser [VariantSetMetadataType]

FromHttpApiData VariantSetMetadataType

Methods

parseUrlPiece :: Text -> Either Text VariantSetMetadataType

parseHeader :: ByteString -> Either Text VariantSetMetadataType

parseQueryParam :: Text -> Either Text VariantSetMetadataType

ToHttpApiData VariantSetMetadataType

Methods

toUrlPiece :: VariantSetMetadataType -> Text

toHeader :: VariantSetMetadataType -> ByteString

toQueryParam :: VariantSetMetadataType -> Text

type Rep VariantSetMetadataType

type Rep VariantSetMetadataType = D1 (MetaData "VariantSetMetadataType" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) ((:+:) ((:+:) (C1 (MetaCons "TypeUnspecified" PrefixI False) U1) ((:+:) (C1 (MetaCons "Integer" PrefixI False) U1) (C1 (MetaCons "Float" PrefixI False) U1))) ((:+:) (C1 (MetaCons "Flag" PrefixI False) U1) ((:+:) (C1 (MetaCons "Character" PrefixI False) U1) (C1 (MetaCons "String" PrefixI False) U1))))

TestIAMPermissionsResponse

data TestIAMPermissionsResponse

Response message for `TestIamPermissions` method.

See: testIAMPermissionsResponse smart constructor.

Instances

Eq TestIAMPermissionsResponse

Methods

(==) :: TestIAMPermissionsResponse -> TestIAMPermissionsResponse -> Bool

(/=) :: TestIAMPermissionsResponse -> TestIAMPermissionsResponse -> Bool

Data TestIAMPermissionsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> TestIAMPermissionsResponse -> c TestIAMPermissionsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c TestIAMPermissionsResponse

toConstr :: TestIAMPermissionsResponse -> Constr

dataTypeOf :: TestIAMPermissionsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c TestIAMPermissionsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c TestIAMPermissionsResponse)

gmapT :: (forall b. Data b => b -> b) -> TestIAMPermissionsResponse -> TestIAMPermissionsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> TestIAMPermissionsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> TestIAMPermissionsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> TestIAMPermissionsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> TestIAMPermissionsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> TestIAMPermissionsResponse -> m TestIAMPermissionsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> TestIAMPermissionsResponse -> m TestIAMPermissionsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> TestIAMPermissionsResponse -> m TestIAMPermissionsResponse

Show TestIAMPermissionsResponse

Methods

showsPrec :: Int -> TestIAMPermissionsResponse -> ShowS

show :: TestIAMPermissionsResponse -> String

showList :: [TestIAMPermissionsResponse] -> ShowS

Generic TestIAMPermissionsResponse

Associated Types

type Rep TestIAMPermissionsResponse :: * -> *

Methods

from :: TestIAMPermissionsResponse -> Rep TestIAMPermissionsResponse x

to :: Rep TestIAMPermissionsResponse x -> TestIAMPermissionsResponse

ToJSON TestIAMPermissionsResponse

Methods

toJSON :: TestIAMPermissionsResponse -> Value

toEncoding :: TestIAMPermissionsResponse -> Encoding

toJSONList :: [TestIAMPermissionsResponse] -> Value

toEncodingList :: [TestIAMPermissionsResponse] -> Encoding

FromJSON TestIAMPermissionsResponse

Methods

parseJSON :: Value -> Parser TestIAMPermissionsResponse

parseJSONList :: Value -> Parser [TestIAMPermissionsResponse]

type Rep TestIAMPermissionsResponse

type Rep TestIAMPermissionsResponse = D1 (MetaData "TestIAMPermissionsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "TestIAMPermissionsResponse'" PrefixI True) (S1 (MetaSel (Just Symbol "_tiamprPermissions") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe [Text]))))

testIAMPermissionsResponse :: TestIAMPermissionsResponse

Creates a value of TestIAMPermissionsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• tiamprPermissions

tiamprPermissions :: Lens' TestIAMPermissionsResponse [Text]

A subset of `TestPermissionsRequest.permissions` that the caller is allowed.

ListDataSetsResponse

data ListDataSetsResponse

The dataset list response.

See: listDataSetsResponse smart constructor.

Instances

Eq ListDataSetsResponse

Methods

(==) :: ListDataSetsResponse -> ListDataSetsResponse -> Bool

(/=) :: ListDataSetsResponse -> ListDataSetsResponse -> Bool

Data ListDataSetsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ListDataSetsResponse -> c ListDataSetsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ListDataSetsResponse

toConstr :: ListDataSetsResponse -> Constr

dataTypeOf :: ListDataSetsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ListDataSetsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ListDataSetsResponse)

gmapT :: (forall b. Data b => b -> b) -> ListDataSetsResponse -> ListDataSetsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ListDataSetsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ListDataSetsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> ListDataSetsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ListDataSetsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ListDataSetsResponse -> m ListDataSetsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ListDataSetsResponse -> m ListDataSetsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ListDataSetsResponse -> m ListDataSetsResponse

Show ListDataSetsResponse

Methods

showsPrec :: Int -> ListDataSetsResponse -> ShowS

show :: ListDataSetsResponse -> String

showList :: [ListDataSetsResponse] -> ShowS

Generic ListDataSetsResponse

Associated Types

type Rep ListDataSetsResponse :: * -> *

Methods

from :: ListDataSetsResponse -> Rep ListDataSetsResponse x

to :: Rep ListDataSetsResponse x -> ListDataSetsResponse

ToJSON ListDataSetsResponse

Methods

toJSON :: ListDataSetsResponse -> Value

toEncoding :: ListDataSetsResponse -> Encoding

toJSONList :: [ListDataSetsResponse] -> Value

toEncodingList :: [ListDataSetsResponse] -> Encoding

FromJSON ListDataSetsResponse

Methods

parseJSON :: Value -> Parser ListDataSetsResponse

parseJSONList :: Value -> Parser [ListDataSetsResponse]

type Rep ListDataSetsResponse

type Rep ListDataSetsResponse = D1 (MetaData "ListDataSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ListDataSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_ldsrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ldsrDataSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [DataSet])))))

listDataSetsResponse :: ListDataSetsResponse

Creates a value of ListDataSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• ldsrNextPageToken
• ldsrDataSets

ldsrNextPageToken :: Lens' ListDataSetsResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

ldsrDataSets :: Lens' ListDataSetsResponse [DataSet]

The list of matching Datasets.

ImportReadGroupSetsRequest

data ImportReadGroupSetsRequest

The read group set import request.

See: importReadGroupSetsRequest smart constructor.

Instances

Eq ImportReadGroupSetsRequest

Methods

(==) :: ImportReadGroupSetsRequest -> ImportReadGroupSetsRequest -> Bool

(/=) :: ImportReadGroupSetsRequest -> ImportReadGroupSetsRequest -> Bool

Data ImportReadGroupSetsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportReadGroupSetsRequest -> c ImportReadGroupSetsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportReadGroupSetsRequest

toConstr :: ImportReadGroupSetsRequest -> Constr

dataTypeOf :: ImportReadGroupSetsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ImportReadGroupSetsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportReadGroupSetsRequest)

gmapT :: (forall b. Data b => b -> b) -> ImportReadGroupSetsRequest -> ImportReadGroupSetsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> ImportReadGroupSetsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportReadGroupSetsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequest -> m ImportReadGroupSetsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequest -> m ImportReadGroupSetsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequest -> m ImportReadGroupSetsRequest

Show ImportReadGroupSetsRequest

Methods

showsPrec :: Int -> ImportReadGroupSetsRequest -> ShowS

show :: ImportReadGroupSetsRequest -> String

showList :: [ImportReadGroupSetsRequest] -> ShowS

Generic ImportReadGroupSetsRequest

Associated Types

type Rep ImportReadGroupSetsRequest :: * -> *

Methods

from :: ImportReadGroupSetsRequest -> Rep ImportReadGroupSetsRequest x

to :: Rep ImportReadGroupSetsRequest x -> ImportReadGroupSetsRequest

ToJSON ImportReadGroupSetsRequest

Methods

toJSON :: ImportReadGroupSetsRequest -> Value

toEncoding :: ImportReadGroupSetsRequest -> Encoding

toJSONList :: [ImportReadGroupSetsRequest] -> Value

toEncodingList :: [ImportReadGroupSetsRequest] -> Encoding

FromJSON ImportReadGroupSetsRequest

Methods

parseJSON :: Value -> Parser ImportReadGroupSetsRequest

parseJSONList :: Value -> Parser [ImportReadGroupSetsRequest]

type Rep ImportReadGroupSetsRequest

type Rep ImportReadGroupSetsRequest = D1 (MetaData "ImportReadGroupSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ImportReadGroupSetsRequest'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_irgsrReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_irgsrDataSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_irgsrSourceURIs") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_irgsrPartitionStrategy") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ImportReadGroupSetsRequestPartitionStrategy))))))

importReadGroupSetsRequest :: ImportReadGroupSetsRequest

Creates a value of ImportReadGroupSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• irgsrReferenceSetId
• irgsrDataSetId
• irgsrSourceURIs
• irgsrPartitionStrategy

irgsrReferenceSetId :: Lens' ImportReadGroupSetsRequest (Maybe Text)

The reference set to which the imported read group sets are aligned to, if any. The reference names of this reference set must be a superset of those found in the imported file headers. If no reference set id is provided, a best effort is made to associate with a matching reference set.

irgsrDataSetId :: Lens' ImportReadGroupSetsRequest (Maybe Text)

Required. The ID of the dataset these read group sets will belong to. The caller must have WRITE permissions to this dataset.

irgsrSourceURIs :: Lens' ImportReadGroupSetsRequest [Text]

A list of URIs pointing at BAM files in Google Cloud Storage. Those URIs can include wildcards (*), but do not add or remove matching files before import has completed. Note that Google Cloud Storage object listing is only eventually consistent: files added may be not be immediately visible to everyone. Thus, if using a wildcard it is preferable not to start the import immediately after the files are created.

irgsrPartitionStrategy :: Lens' ImportReadGroupSetsRequest (Maybe ImportReadGroupSetsRequestPartitionStrategy)

The partition strategy describes how read groups are partitioned into read group sets.

ImportVariantsRequest

data ImportVariantsRequest

The variant data import request.

See: importVariantsRequest smart constructor.

Instances

Eq ImportVariantsRequest

Methods

(==) :: ImportVariantsRequest -> ImportVariantsRequest -> Bool

(/=) :: ImportVariantsRequest -> ImportVariantsRequest -> Bool

Data ImportVariantsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportVariantsRequest -> c ImportVariantsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportVariantsRequest

toConstr :: ImportVariantsRequest -> Constr

dataTypeOf :: ImportVariantsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ImportVariantsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportVariantsRequest)

gmapT :: (forall b. Data b => b -> b) -> ImportVariantsRequest -> ImportVariantsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> ImportVariantsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportVariantsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportVariantsRequest -> m ImportVariantsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequest -> m ImportVariantsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequest -> m ImportVariantsRequest

Show ImportVariantsRequest

Methods

showsPrec :: Int -> ImportVariantsRequest -> ShowS

show :: ImportVariantsRequest -> String

showList :: [ImportVariantsRequest] -> ShowS

Generic ImportVariantsRequest

Associated Types

type Rep ImportVariantsRequest :: * -> *

Methods

from :: ImportVariantsRequest -> Rep ImportVariantsRequest x

to :: Rep ImportVariantsRequest x -> ImportVariantsRequest

ToJSON ImportVariantsRequest

Methods

toJSON :: ImportVariantsRequest -> Value

toEncoding :: ImportVariantsRequest -> Encoding

toJSONList :: [ImportVariantsRequest] -> Value

toEncodingList :: [ImportVariantsRequest] -> Encoding

FromJSON ImportVariantsRequest

Methods

parseJSON :: Value -> Parser ImportVariantsRequest

parseJSONList :: Value -> Parser [ImportVariantsRequest]

type Rep ImportVariantsRequest

type Rep ImportVariantsRequest = D1 (MetaData "ImportVariantsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ImportVariantsRequest'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_ivrVariantSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ivrFormat") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ImportVariantsRequestFormat)))) ((:*:) (S1 (MetaSel (Just Symbol "_ivrInfoMergeConfig") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ImportVariantsRequestInfoMergeConfig))) ((:*:) (S1 (MetaSel (Just Symbol "_ivrNormalizeReferenceNames") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))) (S1 (MetaSel (Just Symbol "_ivrSourceURIs") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))))))

importVariantsRequest :: ImportVariantsRequest

Creates a value of ImportVariantsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• ivrVariantSetId
• ivrFormat
• ivrInfoMergeConfig
• ivrNormalizeReferenceNames
• ivrSourceURIs

ivrVariantSetId :: Lens' ImportVariantsRequest (Maybe Text)

Required. The variant set to which variant data should be imported.

ivrFormat :: Lens' ImportVariantsRequest (Maybe ImportVariantsRequestFormat)

The format of the variant data being imported. If unspecified, defaults to to `VCF`.

ivrInfoMergeConfig :: Lens' ImportVariantsRequest (Maybe ImportVariantsRequestInfoMergeConfig)

A mapping between info field keys and the InfoMergeOperations to be performed on them. This is plumbed down to the MergeVariantRequests generated by the resulting import job.

ivrNormalizeReferenceNames :: Lens' ImportVariantsRequest (Maybe Bool)

Convert reference names to the canonical representation. hg19 haploytypes (those reference names containing "_hap") are not modified in any way. All other reference names are modified according to the following rules: The reference name is capitalized. The "chr" prefix is dropped for all autosomes and sex chromsomes. For example "chr17" becomes "17" and "chrX" becomes "X". All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".

ivrSourceURIs :: Lens' ImportVariantsRequest [Text]

A list of URIs referencing variant files in Google Cloud Storage. URIs can include wildcards as described here. Note that recursive wildcards ('**') are not supported.

ExternalId

data ExternalId

Instances

Eq ExternalId

Methods

(==) :: ExternalId -> ExternalId -> Bool

(/=) :: ExternalId -> ExternalId -> Bool

Data ExternalId

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ExternalId -> c ExternalId

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ExternalId

toConstr :: ExternalId -> Constr

dataTypeOf :: ExternalId -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ExternalId)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ExternalId)

gmapT :: (forall b. Data b => b -> b) -> ExternalId -> ExternalId

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ExternalId -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ExternalId -> r

gmapQ :: (forall d. Data d => d -> u) -> ExternalId -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ExternalId -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ExternalId -> m ExternalId

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ExternalId -> m ExternalId

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ExternalId -> m ExternalId

Show ExternalId

Methods

showsPrec :: Int -> ExternalId -> ShowS

show :: ExternalId -> String

showList :: [ExternalId] -> ShowS

Generic ExternalId

Associated Types

type Rep ExternalId :: * -> *

Methods

from :: ExternalId -> Rep ExternalId x

to :: Rep ExternalId x -> ExternalId

ToJSON ExternalId

Methods

toJSON :: ExternalId -> Value

toEncoding :: ExternalId -> Encoding

toJSONList :: [ExternalId] -> Value

toEncodingList :: [ExternalId] -> Encoding

FromJSON ExternalId

Methods

parseJSON :: Value -> Parser ExternalId

parseJSONList :: Value -> Parser [ExternalId]

type Rep ExternalId

type Rep ExternalId = D1 (MetaData "ExternalId" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ExternalId'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_eiSourceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_eiId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

externalId :: ExternalId

Creates a value of ExternalId with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• eiSourceName
• eiId

eiSourceName :: Lens' ExternalId (Maybe Text)

The name of the source of this data.

eiId :: Lens' ExternalId (Maybe Text)

The id used by the source of this data.

CigarUnit

data CigarUnit

A single CIGAR operation.

See: cigarUnit smart constructor.

Instances

Eq CigarUnit

Methods

(==) :: CigarUnit -> CigarUnit -> Bool

(/=) :: CigarUnit -> CigarUnit -> Bool

Data CigarUnit

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CigarUnit -> c CigarUnit

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CigarUnit

toConstr :: CigarUnit -> Constr

dataTypeOf :: CigarUnit -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c CigarUnit)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CigarUnit)

gmapT :: (forall b. Data b => b -> b) -> CigarUnit -> CigarUnit

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CigarUnit -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CigarUnit -> r

gmapQ :: (forall d. Data d => d -> u) -> CigarUnit -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> CigarUnit -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> CigarUnit -> m CigarUnit

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CigarUnit -> m CigarUnit

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CigarUnit -> m CigarUnit

Show CigarUnit

Methods

showsPrec :: Int -> CigarUnit -> ShowS

show :: CigarUnit -> String

showList :: [CigarUnit] -> ShowS

Generic CigarUnit

Associated Types

type Rep CigarUnit :: * -> *

Methods

from :: CigarUnit -> Rep CigarUnit x

to :: Rep CigarUnit x -> CigarUnit

ToJSON CigarUnit

Methods

toJSON :: CigarUnit -> Value

toEncoding :: CigarUnit -> Encoding

toJSONList :: [CigarUnit] -> Value

toEncodingList :: [CigarUnit] -> Encoding

FromJSON CigarUnit

Methods

parseJSON :: Value -> Parser CigarUnit

parseJSONList :: Value -> Parser [CigarUnit]

type Rep CigarUnit

type Rep CigarUnit = D1 (MetaData "CigarUnit" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "CigarUnit'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_cuOperation") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe CigarUnitOperation))) ((:*:) (S1 (MetaSel (Just Symbol "_cuOperationLength") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_cuReferenceSequence") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

cigarUnit :: CigarUnit

Creates a value of CigarUnit with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• cuOperation
• cuOperationLength
• cuReferenceSequence

cuOperation :: Lens' CigarUnit (Maybe CigarUnitOperation)

cuOperationLength :: Lens' CigarUnit (Maybe Int64)

The number of genomic bases that the operation runs for. Required.

cuReferenceSequence :: Lens' CigarUnit (Maybe Text)

`referenceSequence` is only used at mismatches (`SEQUENCE_MISMATCH`) and deletions (`DELETE`). Filling this field replaces SAM's MD tag. If the relevant information is not available, this field is unset.

Policy

data Policy

Defines an Identity and Access Management (IAM) policy. It is used to specify access control policies for Cloud Platform resources. A `Policy` consists of a list of `bindings`. A `Binding` binds a list of `members` to a `role`, where the members can be user accounts, Google groups, Google domains, and service accounts. A `role` is a named list of permissions defined by IAM. **Example** { "bindings": [ { "role": "roles/owner", "members": [ "user:mike'example.com", "group:admins'example.com", "domain:google.com", "serviceAccount:my-other-app'appspot.gserviceaccount.com", ] }, { "role": "roles/viewer", "members": ["user:sean'example.com"] } ] } For a description of IAM and its features, see the IAM developer's guide.

See: policy smart constructor.

Instances

Eq Policy

Methods

(==) :: Policy -> Policy -> Bool

(/=) :: Policy -> Policy -> Bool

Data Policy

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Policy -> c Policy

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Policy

toConstr :: Policy -> Constr

dataTypeOf :: Policy -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Policy)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Policy)

gmapT :: (forall b. Data b => b -> b) -> Policy -> Policy

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Policy -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Policy -> r

gmapQ :: (forall d. Data d => d -> u) -> Policy -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Policy -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Policy -> m Policy

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Policy -> m Policy

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Policy -> m Policy

Show Policy

Methods

showsPrec :: Int -> Policy -> ShowS

show :: Policy -> String

showList :: [Policy] -> ShowS

Generic Policy

Associated Types

type Rep Policy :: * -> *

Methods

from :: Policy -> Rep Policy x

to :: Rep Policy x -> Policy

ToJSON Policy

Methods

toJSON :: Policy -> Value

toEncoding :: Policy -> Encoding

toJSONList :: [Policy] -> Value

toEncodingList :: [Policy] -> Encoding

FromJSON Policy

Methods

parseJSON :: Value -> Parser Policy

parseJSONList :: Value -> Parser [Policy]

type Rep Policy

type Rep Policy = D1 (MetaData "Policy" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Policy'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_polEtag") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bytes))) ((:*:) (S1 (MetaSel (Just Symbol "_polVersion") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_polBindings") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Binding]))))))

policy :: Policy

Creates a value of Policy with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• polEtag
• polVersion
• polBindings

polEtag :: Lens' Policy (Maybe ByteString)

`etag` is used for optimistic concurrency control as a way to help prevent simultaneous updates of a policy from overwriting each other. It is strongly suggested that systems make use of the `etag` in the read-modify-write cycle to perform policy updates in order to avoid race conditions: An `etag` is returned in the response to `getIamPolicy`, and systems are expected to put that etag in the request to `setIamPolicy` to ensure that their change will be applied to the same version of the policy. If no `etag` is provided in the call to `setIamPolicy`, then the existing policy is overwritten blindly.

polVersion :: Lens' Policy (Maybe Int32)

Version of the `Policy`. The default version is 0.

polBindings :: Lens' Policy [Binding]

Associates a list of `members` to a `role`. Multiple `bindings` must not be specified for the same `role`. `bindings` with no members will result in an error.

ExportVariantSetRequest

data ExportVariantSetRequest

The variant data export request.

See: exportVariantSetRequest smart constructor.

Instances

Eq ExportVariantSetRequest

Methods

(==) :: ExportVariantSetRequest -> ExportVariantSetRequest -> Bool

(/=) :: ExportVariantSetRequest -> ExportVariantSetRequest -> Bool

Data ExportVariantSetRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ExportVariantSetRequest -> c ExportVariantSetRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ExportVariantSetRequest

toConstr :: ExportVariantSetRequest -> Constr

dataTypeOf :: ExportVariantSetRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ExportVariantSetRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ExportVariantSetRequest)

gmapT :: (forall b. Data b => b -> b) -> ExportVariantSetRequest -> ExportVariantSetRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ExportVariantSetRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ExportVariantSetRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> ExportVariantSetRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ExportVariantSetRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ExportVariantSetRequest -> m ExportVariantSetRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportVariantSetRequest -> m ExportVariantSetRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportVariantSetRequest -> m ExportVariantSetRequest

Show ExportVariantSetRequest

Methods

showsPrec :: Int -> ExportVariantSetRequest -> ShowS

show :: ExportVariantSetRequest -> String

showList :: [ExportVariantSetRequest] -> ShowS

Generic ExportVariantSetRequest

Associated Types

type Rep ExportVariantSetRequest :: * -> *

Methods

from :: ExportVariantSetRequest -> Rep ExportVariantSetRequest x

to :: Rep ExportVariantSetRequest x -> ExportVariantSetRequest

ToJSON ExportVariantSetRequest

Methods

toJSON :: ExportVariantSetRequest -> Value

toEncoding :: ExportVariantSetRequest -> Encoding

toJSONList :: [ExportVariantSetRequest] -> Value

toEncodingList :: [ExportVariantSetRequest] -> Encoding

FromJSON ExportVariantSetRequest

Methods

parseJSON :: Value -> Parser ExportVariantSetRequest

parseJSONList :: Value -> Parser [ExportVariantSetRequest]

type Rep ExportVariantSetRequest

type Rep ExportVariantSetRequest = D1 (MetaData "ExportVariantSetRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ExportVariantSetRequest'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_evsrBigQueryDataSet") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_evsrBigQueryTable") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_evsrFormat") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ExportVariantSetRequestFormat))) ((:*:) (S1 (MetaSel (Just Symbol "_evsrCallSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_evsrProjectId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

exportVariantSetRequest :: ExportVariantSetRequest

Creates a value of ExportVariantSetRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• evsrBigQueryDataSet
• evsrBigQueryTable
• evsrFormat
• evsrCallSetIds
• evsrProjectId

evsrBigQueryDataSet :: Lens' ExportVariantSetRequest (Maybe Text)

Required. The BigQuery dataset to export data to. This dataset must already exist. Note that this is distinct from the Genomics concept of "dataset".

evsrBigQueryTable :: Lens' ExportVariantSetRequest (Maybe Text)

Required. The BigQuery table to export data to. If the table doesn't exist, it will be created. If it already exists, it will be overwritten.

evsrFormat :: Lens' ExportVariantSetRequest (Maybe ExportVariantSetRequestFormat)

The format for the exported data.

evsrCallSetIds :: Lens' ExportVariantSetRequest [Text]

If provided, only variant call information from the specified call sets will be exported. By default all variant calls are exported.

evsrProjectId :: Lens' ExportVariantSetRequest (Maybe Text)

Required. The Google Cloud project ID that owns the destination BigQuery dataset. The caller must have WRITE access to this project. This project will also own the resulting export job.

VariantAnnotationType

data VariantAnnotationType

Type has been adapted from ClinVar's list of variant types.

Constructors

VATTypeUnspecified

TYPE_UNSPECIFIED

VATTypeOther

TYPE_OTHER `TYPE_OTHER` should be used when no other Type will suffice. Further explanation of the variant type may be included in the info field.

VATInsertion

INSERTION `INSERTION` indicates an insertion.

VATDeletion

DELETION `DELETION` indicates a deletion.

VATSubstitution

SUBSTITUTION `SUBSTITUTION` indicates a block substitution of two or more nucleotides.

VATSnp

SNP `SNP` indicates a single nucleotide polymorphism.

VATStructural

STRUCTURAL `STRUCTURAL` indicates a large structural variant, including chromosomal fusions, inversions, etc.

VATCnv

CNV `CNV` indicates a variation in copy number.

Instances

Enum VariantAnnotationType

Methods

succ :: VariantAnnotationType -> VariantAnnotationType

pred :: VariantAnnotationType -> VariantAnnotationType

toEnum :: Int -> VariantAnnotationType

fromEnum :: VariantAnnotationType -> Int

enumFrom :: VariantAnnotationType -> [VariantAnnotationType]

enumFromThen :: VariantAnnotationType -> VariantAnnotationType -> [VariantAnnotationType]

enumFromTo :: VariantAnnotationType -> VariantAnnotationType -> [VariantAnnotationType]

enumFromThenTo :: VariantAnnotationType -> VariantAnnotationType -> VariantAnnotationType -> [VariantAnnotationType]

Eq VariantAnnotationType

Methods

(==) :: VariantAnnotationType -> VariantAnnotationType -> Bool

(/=) :: VariantAnnotationType -> VariantAnnotationType -> Bool

Data VariantAnnotationType

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantAnnotationType -> c VariantAnnotationType

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantAnnotationType

toConstr :: VariantAnnotationType -> Constr

dataTypeOf :: VariantAnnotationType -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantAnnotationType)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantAnnotationType)

gmapT :: (forall b. Data b => b -> b) -> VariantAnnotationType -> VariantAnnotationType

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationType -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationType -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantAnnotationType -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantAnnotationType -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantAnnotationType -> m VariantAnnotationType

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationType -> m VariantAnnotationType

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationType -> m VariantAnnotationType

Ord VariantAnnotationType

Methods

compare :: VariantAnnotationType -> VariantAnnotationType -> Ordering

(<) :: VariantAnnotationType -> VariantAnnotationType -> Bool

(<=) :: VariantAnnotationType -> VariantAnnotationType -> Bool

(>) :: VariantAnnotationType -> VariantAnnotationType -> Bool

(>=) :: VariantAnnotationType -> VariantAnnotationType -> Bool

max :: VariantAnnotationType -> VariantAnnotationType -> VariantAnnotationType

min :: VariantAnnotationType -> VariantAnnotationType -> VariantAnnotationType

Read VariantAnnotationType

Methods

readsPrec :: Int -> ReadS VariantAnnotationType

readList :: ReadS [VariantAnnotationType]

readPrec :: ReadPrec VariantAnnotationType

readListPrec :: ReadPrec [VariantAnnotationType]

Show VariantAnnotationType

Methods

showsPrec :: Int -> VariantAnnotationType -> ShowS

show :: VariantAnnotationType -> String

showList :: [VariantAnnotationType] -> ShowS

Generic VariantAnnotationType

Associated Types

type Rep VariantAnnotationType :: * -> *

Methods

from :: VariantAnnotationType -> Rep VariantAnnotationType x

to :: Rep VariantAnnotationType x -> VariantAnnotationType

Hashable VariantAnnotationType

Methods

hashWithSalt :: Int -> VariantAnnotationType -> Int

hash :: VariantAnnotationType -> Int

ToJSON VariantAnnotationType

Methods

toJSON :: VariantAnnotationType -> Value

toEncoding :: VariantAnnotationType -> Encoding

toJSONList :: [VariantAnnotationType] -> Value

toEncodingList :: [VariantAnnotationType] -> Encoding

FromJSON VariantAnnotationType

Methods

parseJSON :: Value -> Parser VariantAnnotationType

parseJSONList :: Value -> Parser [VariantAnnotationType]

FromHttpApiData VariantAnnotationType

Methods

parseUrlPiece :: Text -> Either Text VariantAnnotationType

parseHeader :: ByteString -> Either Text VariantAnnotationType

parseQueryParam :: Text -> Either Text VariantAnnotationType

ToHttpApiData VariantAnnotationType

Methods

toUrlPiece :: VariantAnnotationType -> Text

toHeader :: VariantAnnotationType -> ByteString

toQueryParam :: VariantAnnotationType -> Text

type Rep VariantAnnotationType

type Rep VariantAnnotationType = D1 (MetaData "VariantAnnotationType" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) ((:+:) ((:+:) ((:+:) (C1 (MetaCons "VATTypeUnspecified" PrefixI False) U1) (C1 (MetaCons "VATTypeOther" PrefixI False) U1)) ((:+:) (C1 (MetaCons "VATInsertion" PrefixI False) U1) (C1 (MetaCons "VATDeletion" PrefixI False) U1))) ((:+:) ((:+:) (C1 (MetaCons "VATSubstitution" PrefixI False) U1) (C1 (MetaCons "VATSnp" PrefixI False) U1)) ((:+:) (C1 (MetaCons "VATStructural" PrefixI False) U1) (C1 (MetaCons "VATCnv" PrefixI False) U1))))

OperationMetadata

data OperationMetadata

Metadata describing an Operation.

See: operationMetadata smart constructor.

Instances

Eq OperationMetadata

Methods

(==) :: OperationMetadata -> OperationMetadata -> Bool

(/=) :: OperationMetadata -> OperationMetadata -> Bool

Data OperationMetadata

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationMetadata -> c OperationMetadata

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationMetadata

toConstr :: OperationMetadata -> Constr

dataTypeOf :: OperationMetadata -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c OperationMetadata)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationMetadata)

gmapT :: (forall b. Data b => b -> b) -> OperationMetadata -> OperationMetadata

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadata -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadata -> r

gmapQ :: (forall d. Data d => d -> u) -> OperationMetadata -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationMetadata -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationMetadata -> m OperationMetadata

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadata -> m OperationMetadata

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadata -> m OperationMetadata

Show OperationMetadata

Methods

showsPrec :: Int -> OperationMetadata -> ShowS

show :: OperationMetadata -> String

showList :: [OperationMetadata] -> ShowS

Generic OperationMetadata

Associated Types

type Rep OperationMetadata :: * -> *

Methods

from :: OperationMetadata -> Rep OperationMetadata x

to :: Rep OperationMetadata x -> OperationMetadata

ToJSON OperationMetadata

Methods

toJSON :: OperationMetadata -> Value

toEncoding :: OperationMetadata -> Encoding

toJSONList :: [OperationMetadata] -> Value

toEncodingList :: [OperationMetadata] -> Encoding

FromJSON OperationMetadata

Methods

parseJSON :: Value -> Parser OperationMetadata

parseJSONList :: Value -> Parser [OperationMetadata]

type Rep OperationMetadata

type Rep OperationMetadata = D1 (MetaData "OperationMetadata" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "OperationMetadata'" PrefixI True) ((:*:) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_omClientId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_omStartTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime')))) ((:*:) (S1 (MetaSel (Just Symbol "_omEvents") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [OperationEvent]))) (S1 (MetaSel (Just Symbol "_omEndTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime'))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_omLabels") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe OperationMetadataLabels))) (S1 (MetaSel (Just Symbol "_omProjectId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_omCreateTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime'))) ((:*:) (S1 (MetaSel (Just Symbol "_omRuntimeMetadata") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe OperationMetadataRuntimeMetadata))) (S1 (MetaSel (Just Symbol "_omRequest") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe OperationMetadataRequest))))))))

operationMetadata :: OperationMetadata

Creates a value of OperationMetadata with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• omClientId
• omStartTime
• omEvents
• omEndTime
• omLabels
• omProjectId
• omCreateTime
• omRuntimeMetadata
• omRequest

omClientId :: Lens' OperationMetadata (Maybe Text)

This field is deprecated. Use `labels` instead. Optionally provided by the caller when submitting the request that creates the operation.

omStartTime :: Lens' OperationMetadata (Maybe UTCTime)

The time at which the job began to run.

omEvents :: Lens' OperationMetadata [OperationEvent]

Optional event messages that were generated during the job's execution. This also contains any warnings that were generated during import or export.

omEndTime :: Lens' OperationMetadata (Maybe UTCTime)

The time at which the job stopped running.

omLabels :: Lens' OperationMetadata (Maybe OperationMetadataLabels)

Optionally provided by the caller when submitting the request that creates the operation.

omProjectId :: Lens' OperationMetadata (Maybe Text)

The Google Cloud Project in which the job is scoped.

omCreateTime :: Lens' OperationMetadata (Maybe UTCTime)

The time at which the job was submitted to the Genomics service.

omRuntimeMetadata :: Lens' OperationMetadata (Maybe OperationMetadataRuntimeMetadata)

Runtime metadata on this Operation.

omRequest :: Lens' OperationMetadata (Maybe OperationMetadataRequest)

The original request that started the operation. Note that this will be in current version of the API. If the operation was started with v1beta2 API and a GetOperation is performed on v1 API, a v1 request will be returned.

ImportVariantsRequestFormat

data ImportVariantsRequestFormat

The format of the variant data being imported. If unspecified, defaults to to `VCF`.

Constructors

FormatUnspecified

FORMAT_UNSPECIFIED

FormatVcf

FORMAT_VCF VCF (Variant Call Format). The VCF files may be gzip compressed. gVCF is also supported.

FormatCompleteGenomics

FORMAT_COMPLETE_GENOMICS Complete Genomics masterVarBeta format. The masterVarBeta files may be bzip2 compressed.

Instances

Enum ImportVariantsRequestFormat

Methods

succ :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat

pred :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat

toEnum :: Int -> ImportVariantsRequestFormat

fromEnum :: ImportVariantsRequestFormat -> Int

enumFrom :: ImportVariantsRequestFormat -> [ImportVariantsRequestFormat]

enumFromThen :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> [ImportVariantsRequestFormat]

enumFromTo :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> [ImportVariantsRequestFormat]

enumFromThenTo :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> [ImportVariantsRequestFormat]

Eq ImportVariantsRequestFormat

Methods

(==) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool

(/=) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool

Data ImportVariantsRequestFormat

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportVariantsRequestFormat -> c ImportVariantsRequestFormat

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportVariantsRequestFormat

toConstr :: ImportVariantsRequestFormat -> Constr

dataTypeOf :: ImportVariantsRequestFormat -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ImportVariantsRequestFormat)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportVariantsRequestFormat)

gmapT :: (forall b. Data b => b -> b) -> ImportVariantsRequestFormat -> ImportVariantsRequestFormat

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequestFormat -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequestFormat -> r

gmapQ :: (forall d. Data d => d -> u) -> ImportVariantsRequestFormat -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportVariantsRequestFormat -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportVariantsRequestFormat -> m ImportVariantsRequestFormat

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequestFormat -> m ImportVariantsRequestFormat

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequestFormat -> m ImportVariantsRequestFormat

Ord ImportVariantsRequestFormat

Methods

compare :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Ordering

(<) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool

(<=) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool

(>) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool

(>=) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool

max :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> ImportVariantsRequestFormat

min :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> ImportVariantsRequestFormat

Read ImportVariantsRequestFormat

Methods

readsPrec :: Int -> ReadS ImportVariantsRequestFormat

readList :: ReadS [ImportVariantsRequestFormat]

readPrec :: ReadPrec ImportVariantsRequestFormat

readListPrec :: ReadPrec [ImportVariantsRequestFormat]

Show ImportVariantsRequestFormat

Methods

showsPrec :: Int -> ImportVariantsRequestFormat -> ShowS

show :: ImportVariantsRequestFormat -> String

showList :: [ImportVariantsRequestFormat] -> ShowS

Generic ImportVariantsRequestFormat

Associated Types

type Rep ImportVariantsRequestFormat :: * -> *

Methods

from :: ImportVariantsRequestFormat -> Rep ImportVariantsRequestFormat x

to :: Rep ImportVariantsRequestFormat x -> ImportVariantsRequestFormat

Hashable ImportVariantsRequestFormat

Methods

hashWithSalt :: Int -> ImportVariantsRequestFormat -> Int

hash :: ImportVariantsRequestFormat -> Int

ToJSON ImportVariantsRequestFormat

Methods

toJSON :: ImportVariantsRequestFormat -> Value

toEncoding :: ImportVariantsRequestFormat -> Encoding

toJSONList :: [ImportVariantsRequestFormat] -> Value

toEncodingList :: [ImportVariantsRequestFormat] -> Encoding

FromJSON ImportVariantsRequestFormat

Methods

parseJSON :: Value -> Parser ImportVariantsRequestFormat

parseJSONList :: Value -> Parser [ImportVariantsRequestFormat]

FromHttpApiData ImportVariantsRequestFormat

Methods

parseUrlPiece :: Text -> Either Text ImportVariantsRequestFormat

parseHeader :: ByteString -> Either Text ImportVariantsRequestFormat

parseQueryParam :: Text -> Either Text ImportVariantsRequestFormat

ToHttpApiData ImportVariantsRequestFormat

Methods

toUrlPiece :: ImportVariantsRequestFormat -> Text

toHeader :: ImportVariantsRequestFormat -> ByteString

toQueryParam :: ImportVariantsRequestFormat -> Text

type Rep ImportVariantsRequestFormat

type Rep ImportVariantsRequestFormat = D1 (MetaData "ImportVariantsRequestFormat" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) ((:+:) (C1 (MetaCons "FormatUnspecified" PrefixI False) U1) ((:+:) (C1 (MetaCons "FormatVcf" PrefixI False) U1) (C1 (MetaCons "FormatCompleteGenomics" PrefixI False) U1)))

SearchAnnotationsRequest

data SearchAnnotationsRequest

Instances

Eq SearchAnnotationsRequest

Methods

(==) :: SearchAnnotationsRequest -> SearchAnnotationsRequest -> Bool

(/=) :: SearchAnnotationsRequest -> SearchAnnotationsRequest -> Bool

Data SearchAnnotationsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchAnnotationsRequest -> c SearchAnnotationsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchAnnotationsRequest

toConstr :: SearchAnnotationsRequest -> Constr

dataTypeOf :: SearchAnnotationsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchAnnotationsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchAnnotationsRequest)

gmapT :: (forall b. Data b => b -> b) -> SearchAnnotationsRequest -> SearchAnnotationsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchAnnotationsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchAnnotationsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchAnnotationsRequest -> m SearchAnnotationsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationsRequest -> m SearchAnnotationsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationsRequest -> m SearchAnnotationsRequest

Show SearchAnnotationsRequest

Methods

showsPrec :: Int -> SearchAnnotationsRequest -> ShowS

show :: SearchAnnotationsRequest -> String

showList :: [SearchAnnotationsRequest] -> ShowS

Generic SearchAnnotationsRequest

Associated Types

type Rep SearchAnnotationsRequest :: * -> *

Methods

from :: SearchAnnotationsRequest -> Rep SearchAnnotationsRequest x

to :: Rep SearchAnnotationsRequest x -> SearchAnnotationsRequest

ToJSON SearchAnnotationsRequest

Methods

toJSON :: SearchAnnotationsRequest -> Value

toEncoding :: SearchAnnotationsRequest -> Encoding

toJSONList :: [SearchAnnotationsRequest] -> Value

toEncodingList :: [SearchAnnotationsRequest] -> Encoding

FromJSON SearchAnnotationsRequest

Methods

parseJSON :: Value -> Parser SearchAnnotationsRequest

parseJSONList :: Value -> Parser [SearchAnnotationsRequest]

type Rep SearchAnnotationsRequest

type Rep SearchAnnotationsRequest = D1 (MetaData "SearchAnnotationsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchAnnotationsRequest'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_sarStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((:*:) (S1 (MetaSel (Just Symbol "_sarReferenceId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sarReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_sarEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_sarPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_sarAnnotationSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_sarPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))))))

searchAnnotationsRequest :: SearchAnnotationsRequest

Creates a value of SearchAnnotationsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• sarStart
• sarReferenceId
• sarReferenceName
• sarEnd
• sarPageToken
• sarAnnotationSetIds
• sarPageSize

sarStart :: Lens' SearchAnnotationsRequest (Maybe Int64)

The start position of the range on the reference, 0-based inclusive. If specified, referenceId or referenceName must be specified. Defaults to 0.

sarReferenceId :: Lens' SearchAnnotationsRequest (Maybe Text)

The ID of the reference to query.

sarReferenceName :: Lens' SearchAnnotationsRequest (Maybe Text)

The name of the reference to query, within the reference set associated with this query.

sarEnd :: Lens' SearchAnnotationsRequest (Maybe Int64)

The end position of the range on the reference, 0-based exclusive. If referenceId or referenceName must be specified, Defaults to the length of the reference.

sarPageToken :: Lens' SearchAnnotationsRequest (Maybe Text)

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

sarAnnotationSetIds :: Lens' SearchAnnotationsRequest [Text]

Required. The annotation sets to search within. The caller must have `READ` access to these annotation sets. All queried annotation sets must have the same type.

sarPageSize :: Lens' SearchAnnotationsRequest (Maybe Int32)

The maximum number of results to return in a single page. If unspecified, defaults to 256. The maximum value is 2048.

SearchVariantSetsResponse

data SearchVariantSetsResponse

The search variant sets response.

See: searchVariantSetsResponse smart constructor.

Instances

Eq SearchVariantSetsResponse

Methods

(==) :: SearchVariantSetsResponse -> SearchVariantSetsResponse -> Bool

(/=) :: SearchVariantSetsResponse -> SearchVariantSetsResponse -> Bool

Data SearchVariantSetsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchVariantSetsResponse -> c SearchVariantSetsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchVariantSetsResponse

toConstr :: SearchVariantSetsResponse -> Constr

dataTypeOf :: SearchVariantSetsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchVariantSetsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchVariantSetsResponse)

gmapT :: (forall b. Data b => b -> b) -> SearchVariantSetsResponse -> SearchVariantSetsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantSetsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantSetsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchVariantSetsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchVariantSetsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchVariantSetsResponse -> m SearchVariantSetsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantSetsResponse -> m SearchVariantSetsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantSetsResponse -> m SearchVariantSetsResponse

Show SearchVariantSetsResponse

Methods

showsPrec :: Int -> SearchVariantSetsResponse -> ShowS

show :: SearchVariantSetsResponse -> String

showList :: [SearchVariantSetsResponse] -> ShowS

Generic SearchVariantSetsResponse

Associated Types

type Rep SearchVariantSetsResponse :: * -> *

Methods

from :: SearchVariantSetsResponse -> Rep SearchVariantSetsResponse x

to :: Rep SearchVariantSetsResponse x -> SearchVariantSetsResponse

ToJSON SearchVariantSetsResponse

Methods

toJSON :: SearchVariantSetsResponse -> Value

toEncoding :: SearchVariantSetsResponse -> Encoding

toJSONList :: [SearchVariantSetsResponse] -> Value

toEncodingList :: [SearchVariantSetsResponse] -> Encoding

FromJSON SearchVariantSetsResponse

Methods

parseJSON :: Value -> Parser SearchVariantSetsResponse

parseJSONList :: Value -> Parser [SearchVariantSetsResponse]

type Rep SearchVariantSetsResponse

type Rep SearchVariantSetsResponse = D1 (MetaData "SearchVariantSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchVariantSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_svsrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_svsrVariantSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [VariantSet])))))

searchVariantSetsResponse :: SearchVariantSetsResponse

Creates a value of SearchVariantSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• svsrNextPageToken
• svsrVariantSets

svsrNextPageToken :: Lens' SearchVariantSetsResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

svsrVariantSets :: Lens' SearchVariantSetsResponse [VariantSet]

The variant sets belonging to the requested dataset.

SearchVariantsRequest

data SearchVariantsRequest

The variant search request.

See: searchVariantsRequest smart constructor.

Instances

Eq SearchVariantsRequest

Methods

(==) :: SearchVariantsRequest -> SearchVariantsRequest -> Bool

(/=) :: SearchVariantsRequest -> SearchVariantsRequest -> Bool

Data SearchVariantsRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchVariantsRequest -> c SearchVariantsRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchVariantsRequest

toConstr :: SearchVariantsRequest -> Constr

dataTypeOf :: SearchVariantsRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchVariantsRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchVariantsRequest)

gmapT :: (forall b. Data b => b -> b) -> SearchVariantsRequest -> SearchVariantsRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantsRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantsRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchVariantsRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchVariantsRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchVariantsRequest -> m SearchVariantsRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantsRequest -> m SearchVariantsRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantsRequest -> m SearchVariantsRequest

Show SearchVariantsRequest

Methods

showsPrec :: Int -> SearchVariantsRequest -> ShowS

show :: SearchVariantsRequest -> String

showList :: [SearchVariantsRequest] -> ShowS

Generic SearchVariantsRequest

Associated Types

type Rep SearchVariantsRequest :: * -> *

Methods

from :: SearchVariantsRequest -> Rep SearchVariantsRequest x

to :: Rep SearchVariantsRequest x -> SearchVariantsRequest

ToJSON SearchVariantsRequest

Methods

toJSON :: SearchVariantsRequest -> Value

toEncoding :: SearchVariantsRequest -> Encoding

toJSONList :: [SearchVariantsRequest] -> Value

toEncodingList :: [SearchVariantsRequest] -> Encoding

FromJSON SearchVariantsRequest

Methods

parseJSON :: Value -> Parser SearchVariantsRequest

parseJSONList :: Value -> Parser [SearchVariantsRequest]

type Rep SearchVariantsRequest

type Rep SearchVariantsRequest = D1 (MetaData "SearchVariantsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchVariantsRequest'" PrefixI True) ((:*:) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_svrStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_svrCallSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((:*:) (S1 (MetaSel (Just Symbol "_svrReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_svrEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_svrMaxCalls") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_svrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_svrVariantName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_svrVariantSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_svrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))))))

searchVariantsRequest :: SearchVariantsRequest

Creates a value of SearchVariantsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• svrStart
• svrCallSetIds
• svrReferenceName
• svrEnd
• svrMaxCalls
• svrPageToken
• svrVariantName
• svrVariantSetIds
• svrPageSize

svrStart :: Lens' SearchVariantsRequest (Maybe Int64)

The beginning of the window (0-based, inclusive) for which overlapping variants should be returned. If unspecified, defaults to 0.

svrCallSetIds :: Lens' SearchVariantsRequest [Text]

Only return variant calls which belong to call sets with these ids. Leaving this blank returns all variant calls. If a variant has no calls belonging to any of these call sets, it won't be returned at all.

svrReferenceName :: Lens' SearchVariantsRequest (Maybe Text)

Required. Only return variants in this reference sequence.

svrEnd :: Lens' SearchVariantsRequest (Maybe Int64)

The end of the window, 0-based exclusive. If unspecified or 0, defaults to the length of the reference.

svrMaxCalls :: Lens' SearchVariantsRequest (Maybe Int32)

The maximum number of calls to return in a single page. Note that this limit may be exceeded in the event that a matching variant contains more calls than the requested maximum. If unspecified, defaults to 5000. The maximum value is 10000.

svrPageToken :: Lens' SearchVariantsRequest (Maybe Text)

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

svrVariantName :: Lens' SearchVariantsRequest (Maybe Text)

Only return variants which have exactly this name.

svrVariantSetIds :: Lens' SearchVariantsRequest [Text]

At most one variant set ID must be provided. Only variants from this variant set will be returned. If omitted, a call set id must be included in the request.

svrPageSize :: Lens' SearchVariantsRequest (Maybe Int32)

The maximum number of variants to return in a single page. If unspecified, defaults to 5000. The maximum value is 10000.

ExportVariantSetRequestFormat

data ExportVariantSetRequestFormat

The format for the exported data.

Constructors

EVSRFFormatUnspecified

FORMAT_UNSPECIFIED

EVSRFFormatBigQuery

FORMAT_BIGQUERY Export the data to Google BigQuery.

Instances

Enum ExportVariantSetRequestFormat

Methods

succ :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat

pred :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat

toEnum :: Int -> ExportVariantSetRequestFormat

fromEnum :: ExportVariantSetRequestFormat -> Int

enumFrom :: ExportVariantSetRequestFormat -> [ExportVariantSetRequestFormat]

enumFromThen :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> [ExportVariantSetRequestFormat]

enumFromTo :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> [ExportVariantSetRequestFormat]

enumFromThenTo :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> [ExportVariantSetRequestFormat]

Eq ExportVariantSetRequestFormat

Methods

(==) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool

(/=) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool

Data ExportVariantSetRequestFormat

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ExportVariantSetRequestFormat -> c ExportVariantSetRequestFormat

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ExportVariantSetRequestFormat

toConstr :: ExportVariantSetRequestFormat -> Constr

dataTypeOf :: ExportVariantSetRequestFormat -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ExportVariantSetRequestFormat)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ExportVariantSetRequestFormat)

gmapT :: (forall b. Data b => b -> b) -> ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ExportVariantSetRequestFormat -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ExportVariantSetRequestFormat -> r

gmapQ :: (forall d. Data d => d -> u) -> ExportVariantSetRequestFormat -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ExportVariantSetRequestFormat -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ExportVariantSetRequestFormat -> m ExportVariantSetRequestFormat

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportVariantSetRequestFormat -> m ExportVariantSetRequestFormat

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportVariantSetRequestFormat -> m ExportVariantSetRequestFormat

Ord ExportVariantSetRequestFormat

Methods

compare :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Ordering

(<) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool

(<=) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool

(>) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool

(>=) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool

max :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat

min :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat

Read ExportVariantSetRequestFormat

Methods

readsPrec :: Int -> ReadS ExportVariantSetRequestFormat

readList :: ReadS [ExportVariantSetRequestFormat]

readPrec :: ReadPrec ExportVariantSetRequestFormat

readListPrec :: ReadPrec [ExportVariantSetRequestFormat]

Show ExportVariantSetRequestFormat

Methods

showsPrec :: Int -> ExportVariantSetRequestFormat -> ShowS

show :: ExportVariantSetRequestFormat -> String

showList :: [ExportVariantSetRequestFormat] -> ShowS

Generic ExportVariantSetRequestFormat

Associated Types

type Rep ExportVariantSetRequestFormat :: * -> *

Methods

from :: ExportVariantSetRequestFormat -> Rep ExportVariantSetRequestFormat x

to :: Rep ExportVariantSetRequestFormat x -> ExportVariantSetRequestFormat

Hashable ExportVariantSetRequestFormat

Methods

hashWithSalt :: Int -> ExportVariantSetRequestFormat -> Int

hash :: ExportVariantSetRequestFormat -> Int

ToJSON ExportVariantSetRequestFormat

Methods

toJSON :: ExportVariantSetRequestFormat -> Value

toEncoding :: ExportVariantSetRequestFormat -> Encoding

toJSONList :: [ExportVariantSetRequestFormat] -> Value

toEncodingList :: [ExportVariantSetRequestFormat] -> Encoding

FromJSON ExportVariantSetRequestFormat

Methods

parseJSON :: Value -> Parser ExportVariantSetRequestFormat

parseJSONList :: Value -> Parser [ExportVariantSetRequestFormat]

FromHttpApiData ExportVariantSetRequestFormat

Methods

parseUrlPiece :: Text -> Either Text ExportVariantSetRequestFormat

parseHeader :: ByteString -> Either Text ExportVariantSetRequestFormat

parseQueryParam :: Text -> Either Text ExportVariantSetRequestFormat

ToHttpApiData ExportVariantSetRequestFormat

Methods

toUrlPiece :: ExportVariantSetRequestFormat -> Text

toHeader :: ExportVariantSetRequestFormat -> ByteString

toQueryParam :: ExportVariantSetRequestFormat -> Text

type Rep ExportVariantSetRequestFormat

type Rep ExportVariantSetRequestFormat = D1 (MetaData "ExportVariantSetRequestFormat" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) ((:+:) (C1 (MetaCons "EVSRFFormatUnspecified" PrefixI False) U1) (C1 (MetaCons "EVSRFFormatBigQuery" PrefixI False) U1))

AnnotationSetInfo

data AnnotationSetInfo

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

See: annotationSetInfo smart constructor.

Instances

Eq AnnotationSetInfo

Methods

(==) :: AnnotationSetInfo -> AnnotationSetInfo -> Bool

(/=) :: AnnotationSetInfo -> AnnotationSetInfo -> Bool

Data AnnotationSetInfo

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> AnnotationSetInfo -> c AnnotationSetInfo

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c AnnotationSetInfo

toConstr :: AnnotationSetInfo -> Constr

dataTypeOf :: AnnotationSetInfo -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c AnnotationSetInfo)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c AnnotationSetInfo)

gmapT :: (forall b. Data b => b -> b) -> AnnotationSetInfo -> AnnotationSetInfo

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSetInfo -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSetInfo -> r

gmapQ :: (forall d. Data d => d -> u) -> AnnotationSetInfo -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> AnnotationSetInfo -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> AnnotationSetInfo -> m AnnotationSetInfo

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSetInfo -> m AnnotationSetInfo

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSetInfo -> m AnnotationSetInfo

Show AnnotationSetInfo

Methods

showsPrec :: Int -> AnnotationSetInfo -> ShowS

show :: AnnotationSetInfo -> String

showList :: [AnnotationSetInfo] -> ShowS

Generic AnnotationSetInfo

Associated Types

type Rep AnnotationSetInfo :: * -> *

Methods

from :: AnnotationSetInfo -> Rep AnnotationSetInfo x

to :: Rep AnnotationSetInfo x -> AnnotationSetInfo

ToJSON AnnotationSetInfo

Methods

toJSON :: AnnotationSetInfo -> Value

toEncoding :: AnnotationSetInfo -> Encoding

toJSONList :: [AnnotationSetInfo] -> Value

toEncodingList :: [AnnotationSetInfo] -> Encoding

FromJSON AnnotationSetInfo

Methods

parseJSON :: Value -> Parser AnnotationSetInfo

parseJSONList :: Value -> Parser [AnnotationSetInfo]

type Rep AnnotationSetInfo

type Rep AnnotationSetInfo = D1 (MetaData "AnnotationSetInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "AnnotationSetInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_asiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

annotationSetInfo

Arguments

:: HashMap Text [JSONValue]

asiAddtional

-> AnnotationSetInfo

Creates a value of AnnotationSetInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• asiAddtional

asiAddtional :: Lens' AnnotationSetInfo (HashMap Text [JSONValue])

ComputeEngine

data ComputeEngine

Describes a Compute Engine resource that is being managed by a running pipeline.

See: computeEngine smart constructor.

Instances

Eq ComputeEngine

Methods

(==) :: ComputeEngine -> ComputeEngine -> Bool

(/=) :: ComputeEngine -> ComputeEngine -> Bool

Data ComputeEngine

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ComputeEngine -> c ComputeEngine

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ComputeEngine

toConstr :: ComputeEngine -> Constr

dataTypeOf :: ComputeEngine -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ComputeEngine)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ComputeEngine)

gmapT :: (forall b. Data b => b -> b) -> ComputeEngine -> ComputeEngine

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ComputeEngine -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ComputeEngine -> r

gmapQ :: (forall d. Data d => d -> u) -> ComputeEngine -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ComputeEngine -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ComputeEngine -> m ComputeEngine

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ComputeEngine -> m ComputeEngine

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ComputeEngine -> m ComputeEngine

Show ComputeEngine

Methods

showsPrec :: Int -> ComputeEngine -> ShowS

show :: ComputeEngine -> String

showList :: [ComputeEngine] -> ShowS

Generic ComputeEngine

Associated Types

type Rep ComputeEngine :: * -> *

Methods

from :: ComputeEngine -> Rep ComputeEngine x

to :: Rep ComputeEngine x -> ComputeEngine

ToJSON ComputeEngine

Methods

toJSON :: ComputeEngine -> Value

toEncoding :: ComputeEngine -> Encoding

toJSONList :: [ComputeEngine] -> Value

toEncodingList :: [ComputeEngine] -> Encoding

FromJSON ComputeEngine

Methods

parseJSON :: Value -> Parser ComputeEngine

parseJSONList :: Value -> Parser [ComputeEngine]

type Rep ComputeEngine

type Rep ComputeEngine = D1 (MetaData "ComputeEngine" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ComputeEngine'" PrefixI True) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_ceZone") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ceDiskNames") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((:*:) (S1 (MetaSel (Just Symbol "_ceMachineType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ceInstanceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

computeEngine :: ComputeEngine

Creates a value of ComputeEngine with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• ceZone
• ceDiskNames
• ceMachineType
• ceInstanceName

ceZone :: Lens' ComputeEngine (Maybe Text)

The availability zone in which the instance resides.

ceDiskNames :: Lens' ComputeEngine [Text]

The names of the disks that were created for this pipeline.

ceMachineType :: Lens' ComputeEngine (Maybe Text)

The machine type of the instance.

ceInstanceName :: Lens' ComputeEngine (Maybe Text)

The instance on which the operation is running.

SearchAnnotationSetsResponse

data SearchAnnotationSetsResponse

Instances

Eq SearchAnnotationSetsResponse

Methods

(==) :: SearchAnnotationSetsResponse -> SearchAnnotationSetsResponse -> Bool

(/=) :: SearchAnnotationSetsResponse -> SearchAnnotationSetsResponse -> Bool

Data SearchAnnotationSetsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchAnnotationSetsResponse -> c SearchAnnotationSetsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchAnnotationSetsResponse

toConstr :: SearchAnnotationSetsResponse -> Constr

dataTypeOf :: SearchAnnotationSetsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchAnnotationSetsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchAnnotationSetsResponse)

gmapT :: (forall b. Data b => b -> b) -> SearchAnnotationSetsResponse -> SearchAnnotationSetsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationSetsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationSetsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchAnnotationSetsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchAnnotationSetsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsResponse -> m SearchAnnotationSetsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsResponse -> m SearchAnnotationSetsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsResponse -> m SearchAnnotationSetsResponse

Show SearchAnnotationSetsResponse

Methods

showsPrec :: Int -> SearchAnnotationSetsResponse -> ShowS

show :: SearchAnnotationSetsResponse -> String

showList :: [SearchAnnotationSetsResponse] -> ShowS

Generic SearchAnnotationSetsResponse

Associated Types

type Rep SearchAnnotationSetsResponse :: * -> *

Methods

from :: SearchAnnotationSetsResponse -> Rep SearchAnnotationSetsResponse x

to :: Rep SearchAnnotationSetsResponse x -> SearchAnnotationSetsResponse

ToJSON SearchAnnotationSetsResponse

Methods

toJSON :: SearchAnnotationSetsResponse -> Value

toEncoding :: SearchAnnotationSetsResponse -> Encoding

toJSONList :: [SearchAnnotationSetsResponse] -> Value

toEncodingList :: [SearchAnnotationSetsResponse] -> Encoding

FromJSON SearchAnnotationSetsResponse

Methods

parseJSON :: Value -> Parser SearchAnnotationSetsResponse

parseJSONList :: Value -> Parser [SearchAnnotationSetsResponse]

type Rep SearchAnnotationSetsResponse

type Rep SearchAnnotationSetsResponse = D1 (MetaData "SearchAnnotationSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchAnnotationSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_sasrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sasrAnnotationSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [AnnotationSet])))))

searchAnnotationSetsResponse :: SearchAnnotationSetsResponse

Creates a value of SearchAnnotationSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• sasrNextPageToken
• sasrAnnotationSets

sasrNextPageToken :: Lens' SearchAnnotationSetsResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

sasrAnnotationSets :: Lens' SearchAnnotationSetsResponse [AnnotationSet]

The matching annotation sets.

CallSetInfo

data CallSetInfo

A map of additional call set information. This must be of the form map (string key mapping to a list of string values).

See: callSetInfo smart constructor.

Instances

Eq CallSetInfo

Methods

(==) :: CallSetInfo -> CallSetInfo -> Bool

(/=) :: CallSetInfo -> CallSetInfo -> Bool

Data CallSetInfo

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CallSetInfo -> c CallSetInfo

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CallSetInfo

toConstr :: CallSetInfo -> Constr

dataTypeOf :: CallSetInfo -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c CallSetInfo)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CallSetInfo)

gmapT :: (forall b. Data b => b -> b) -> CallSetInfo -> CallSetInfo

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CallSetInfo -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CallSetInfo -> r

gmapQ :: (forall d. Data d => d -> u) -> CallSetInfo -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> CallSetInfo -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> CallSetInfo -> m CallSetInfo

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CallSetInfo -> m CallSetInfo

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CallSetInfo -> m CallSetInfo

Show CallSetInfo

Methods

showsPrec :: Int -> CallSetInfo -> ShowS

show :: CallSetInfo -> String

showList :: [CallSetInfo] -> ShowS

Generic CallSetInfo

Associated Types

type Rep CallSetInfo :: * -> *

Methods

from :: CallSetInfo -> Rep CallSetInfo x

to :: Rep CallSetInfo x -> CallSetInfo

ToJSON CallSetInfo

Methods

toJSON :: CallSetInfo -> Value

toEncoding :: CallSetInfo -> Encoding

toJSONList :: [CallSetInfo] -> Value

toEncodingList :: [CallSetInfo] -> Encoding

FromJSON CallSetInfo

Methods

parseJSON :: Value -> Parser CallSetInfo

parseJSONList :: Value -> Parser [CallSetInfo]

type Rep CallSetInfo

type Rep CallSetInfo = D1 (MetaData "CallSetInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "CallSetInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_csiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

callSetInfo

Arguments

:: HashMap Text [JSONValue]

csiAddtional

-> CallSetInfo

Creates a value of CallSetInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• csiAddtional

csiAddtional :: Lens' CallSetInfo (HashMap Text [JSONValue])

VariantSetMetadataInfo

data VariantSetMetadataInfo

Remaining structured metadata key-value pairs. This must be of the form map (string key mapping to a list of string values).

See: variantSetMetadataInfo smart constructor.

Instances

Eq VariantSetMetadataInfo

Methods

(==) :: VariantSetMetadataInfo -> VariantSetMetadataInfo -> Bool

(/=) :: VariantSetMetadataInfo -> VariantSetMetadataInfo -> Bool

Data VariantSetMetadataInfo

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantSetMetadataInfo -> c VariantSetMetadataInfo

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantSetMetadataInfo

toConstr :: VariantSetMetadataInfo -> Constr

dataTypeOf :: VariantSetMetadataInfo -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c VariantSetMetadataInfo)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantSetMetadataInfo)

gmapT :: (forall b. Data b => b -> b) -> VariantSetMetadataInfo -> VariantSetMetadataInfo

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadataInfo -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadataInfo -> r

gmapQ :: (forall d. Data d => d -> u) -> VariantSetMetadataInfo -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantSetMetadataInfo -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantSetMetadataInfo -> m VariantSetMetadataInfo

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadataInfo -> m VariantSetMetadataInfo

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadataInfo -> m VariantSetMetadataInfo

Show VariantSetMetadataInfo

Methods

showsPrec :: Int -> VariantSetMetadataInfo -> ShowS

show :: VariantSetMetadataInfo -> String

showList :: [VariantSetMetadataInfo] -> ShowS

Generic VariantSetMetadataInfo

Associated Types

type Rep VariantSetMetadataInfo :: * -> *

Methods

from :: VariantSetMetadataInfo -> Rep VariantSetMetadataInfo x

to :: Rep VariantSetMetadataInfo x -> VariantSetMetadataInfo

ToJSON VariantSetMetadataInfo

Methods

toJSON :: VariantSetMetadataInfo -> Value

toEncoding :: VariantSetMetadataInfo -> Encoding

toJSONList :: [VariantSetMetadataInfo] -> Value

toEncodingList :: [VariantSetMetadataInfo] -> Encoding

FromJSON VariantSetMetadataInfo

Methods

parseJSON :: Value -> Parser VariantSetMetadataInfo

parseJSONList :: Value -> Parser [VariantSetMetadataInfo]

type Rep VariantSetMetadataInfo

type Rep VariantSetMetadataInfo = D1 (MetaData "VariantSetMetadataInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "VariantSetMetadataInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_vsmiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

variantSetMetadataInfo

Arguments

:: HashMap Text [JSONValue]

vsmiAddtional

-> VariantSetMetadataInfo

Creates a value of VariantSetMetadataInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• vsmiAddtional

vsmiAddtional :: Lens' VariantSetMetadataInfo (HashMap Text [JSONValue])

OperationResponse

data OperationResponse

If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If importing Variants, an ImportVariantsResponse is returned. For pipelines and exports, an empty response is returned.

See: operationResponse smart constructor.

Instances

Eq OperationResponse

Methods

(==) :: OperationResponse -> OperationResponse -> Bool

(/=) :: OperationResponse -> OperationResponse -> Bool

Data OperationResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationResponse -> c OperationResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationResponse

toConstr :: OperationResponse -> Constr

dataTypeOf :: OperationResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c OperationResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationResponse)

gmapT :: (forall b. Data b => b -> b) -> OperationResponse -> OperationResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> OperationResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationResponse -> m OperationResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationResponse -> m OperationResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationResponse -> m OperationResponse

Show OperationResponse

Methods

showsPrec :: Int -> OperationResponse -> ShowS

show :: OperationResponse -> String

showList :: [OperationResponse] -> ShowS

Generic OperationResponse

Associated Types

type Rep OperationResponse :: * -> *

Methods

from :: OperationResponse -> Rep OperationResponse x

to :: Rep OperationResponse x -> OperationResponse

ToJSON OperationResponse

Methods

toJSON :: OperationResponse -> Value

toEncoding :: OperationResponse -> Encoding

toJSONList :: [OperationResponse] -> Value

toEncodingList :: [OperationResponse] -> Encoding

FromJSON OperationResponse

Methods

parseJSON :: Value -> Parser OperationResponse

parseJSONList :: Value -> Parser [OperationResponse]

type Rep OperationResponse

type Rep OperationResponse = D1 (MetaData "OperationResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "OperationResponse'" PrefixI True) (S1 (MetaSel (Just Symbol "_orAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text JSONValue))))

operationResponse

Arguments

:: HashMap Text JSONValue

orAddtional

-> OperationResponse

Creates a value of OperationResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• orAddtional

orAddtional :: Lens' OperationResponse (HashMap Text JSONValue)

Properties of the object. Contains field 'type with type URL.

Transcript

data Transcript

A transcript represents the assertion that a particular region of the reference genome may be transcribed as RNA.

See: transcript smart constructor.

Instances

Eq Transcript

Methods

(==) :: Transcript -> Transcript -> Bool

(/=) :: Transcript -> Transcript -> Bool

Data Transcript

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Transcript -> c Transcript

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Transcript

toConstr :: Transcript -> Constr

dataTypeOf :: Transcript -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Transcript)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Transcript)

gmapT :: (forall b. Data b => b -> b) -> Transcript -> Transcript

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Transcript -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Transcript -> r

gmapQ :: (forall d. Data d => d -> u) -> Transcript -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Transcript -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Transcript -> m Transcript

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Transcript -> m Transcript

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Transcript -> m Transcript

Show Transcript

Methods

showsPrec :: Int -> Transcript -> ShowS

show :: Transcript -> String

showList :: [Transcript] -> ShowS

Generic Transcript

Associated Types

type Rep Transcript :: * -> *

Methods

from :: Transcript -> Rep Transcript x

to :: Rep Transcript x -> Transcript

ToJSON Transcript

Methods

toJSON :: Transcript -> Value

toEncoding :: Transcript -> Encoding

toJSONList :: [Transcript] -> Value

toEncodingList :: [Transcript] -> Encoding

FromJSON Transcript

Methods

parseJSON :: Value -> Parser Transcript

parseJSONList :: Value -> Parser [Transcript]

type Rep Transcript

type Rep Transcript = D1 (MetaData "Transcript" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Transcript'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_tGeneId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_tCodingSequence") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe CodingSequence))) (S1 (MetaSel (Just Symbol "_tExons") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Exon]))))))

transcript :: Transcript

Creates a value of Transcript with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• tGeneId
• tCodingSequence
• tExons

tGeneId :: Lens' Transcript (Maybe Text)

The annotation ID of the gene from which this transcript is transcribed.

tCodingSequence :: Lens' Transcript (Maybe CodingSequence)

The range of the coding sequence for this transcript, if any. To determine the exact ranges of coding sequence, intersect this range with those of the exons, if any. If there are any exons, the codingSequence must start and end within them. Note that in some cases, the reference genome will not exactly match the observed mRNA transcript e.g. due to variance in the source genome from reference. In these cases, exon.frame will not necessarily match the expected reference reading frame and coding exon reference bases cannot necessarily be concatenated to produce the original transcript mRNA.

tExons :: Lens' Transcript [Exon]

The exons that compose this transcript. This field should be unset for genomes where transcript splicing does not occur, for example prokaryotes. Introns are regions of the transcript that are not included in the spliced RNA product. Though not explicitly modeled here, intron ranges can be deduced; all regions of this transcript that are not exons are introns. Exonic sequences do not necessarily code for a translational product (amino acids). Only the regions of exons bounded by the codingSequence correspond to coding DNA sequence. Exons are ordered by start position and may not overlap.

OperationEvent

data OperationEvent

An event that occurred during an Operation.

See: operationEvent smart constructor.

Instances

Eq OperationEvent

Methods

(==) :: OperationEvent -> OperationEvent -> Bool

(/=) :: OperationEvent -> OperationEvent -> Bool

Data OperationEvent

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationEvent -> c OperationEvent

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationEvent

toConstr :: OperationEvent -> Constr

dataTypeOf :: OperationEvent -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c OperationEvent)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationEvent)

gmapT :: (forall b. Data b => b -> b) -> OperationEvent -> OperationEvent

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationEvent -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationEvent -> r

gmapQ :: (forall d. Data d => d -> u) -> OperationEvent -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationEvent -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationEvent -> m OperationEvent

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationEvent -> m OperationEvent

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationEvent -> m OperationEvent

Show OperationEvent

Methods

showsPrec :: Int -> OperationEvent -> ShowS

show :: OperationEvent -> String

showList :: [OperationEvent] -> ShowS

Generic OperationEvent

Associated Types

type Rep OperationEvent :: * -> *

Methods

from :: OperationEvent -> Rep OperationEvent x

to :: Rep OperationEvent x -> OperationEvent

ToJSON OperationEvent

Methods

toJSON :: OperationEvent -> Value

toEncoding :: OperationEvent -> Encoding

toJSONList :: [OperationEvent] -> Value

toEncodingList :: [OperationEvent] -> Encoding

FromJSON OperationEvent

Methods

parseJSON :: Value -> Parser OperationEvent

parseJSONList :: Value -> Parser [OperationEvent]

type Rep OperationEvent

type Rep OperationEvent = D1 (MetaData "OperationEvent" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "OperationEvent'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_oeStartTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime'))) ((:*:) (S1 (MetaSel (Just Symbol "_oeEndTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime'))) (S1 (MetaSel (Just Symbol "_oeDescription") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

operationEvent :: OperationEvent

Creates a value of OperationEvent with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• oeStartTime
• oeEndTime
• oeDescription

oeStartTime :: Lens' OperationEvent (Maybe UTCTime)

Optional time of when event started.

oeEndTime :: Lens' OperationEvent (Maybe UTCTime)

Optional time of when event finished. An event can have a start time and no finish time. If an event has a finish time, there must be a start time.

oeDescription :: Lens' OperationEvent (Maybe Text)

Required description of event.

ReferenceBound

data ReferenceBound

ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.

See: referenceBound smart constructor.

Instances

Eq ReferenceBound

Methods

(==) :: ReferenceBound -> ReferenceBound -> Bool

(/=) :: ReferenceBound -> ReferenceBound -> Bool

Data ReferenceBound

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReferenceBound -> c ReferenceBound

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReferenceBound

toConstr :: ReferenceBound -> Constr

dataTypeOf :: ReferenceBound -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ReferenceBound)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReferenceBound)

gmapT :: (forall b. Data b => b -> b) -> ReferenceBound -> ReferenceBound

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReferenceBound -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReferenceBound -> r

gmapQ :: (forall d. Data d => d -> u) -> ReferenceBound -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ReferenceBound -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReferenceBound -> m ReferenceBound

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReferenceBound -> m ReferenceBound

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReferenceBound -> m ReferenceBound

Show ReferenceBound

Methods

showsPrec :: Int -> ReferenceBound -> ShowS

show :: ReferenceBound -> String

showList :: [ReferenceBound] -> ShowS

Generic ReferenceBound

Associated Types

type Rep ReferenceBound :: * -> *

Methods

from :: ReferenceBound -> Rep ReferenceBound x

to :: Rep ReferenceBound x -> ReferenceBound

ToJSON ReferenceBound

Methods

toJSON :: ReferenceBound -> Value

toEncoding :: ReferenceBound -> Encoding

toJSONList :: [ReferenceBound] -> Value

toEncodingList :: [ReferenceBound] -> Encoding

FromJSON ReferenceBound

Methods

parseJSON :: Value -> Parser ReferenceBound

parseJSONList :: Value -> Parser [ReferenceBound]

type Rep ReferenceBound

type Rep ReferenceBound = D1 (MetaData "ReferenceBound" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ReferenceBound'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_rbUpperBound") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_rbReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

referenceBound :: ReferenceBound

Creates a value of ReferenceBound with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• rbUpperBound
• rbReferenceName

rbUpperBound :: Lens' ReferenceBound (Maybe Int64)

An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.

rbReferenceName :: Lens' ReferenceBound (Maybe Text)

The name of the reference associated with this reference bound.

UndeleteDataSetRequest

data UndeleteDataSetRequest

Instances

Eq UndeleteDataSetRequest

Methods

(==) :: UndeleteDataSetRequest -> UndeleteDataSetRequest -> Bool

(/=) :: UndeleteDataSetRequest -> UndeleteDataSetRequest -> Bool

Data UndeleteDataSetRequest

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> UndeleteDataSetRequest -> c UndeleteDataSetRequest

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c UndeleteDataSetRequest

toConstr :: UndeleteDataSetRequest -> Constr

dataTypeOf :: UndeleteDataSetRequest -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c UndeleteDataSetRequest)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c UndeleteDataSetRequest)

gmapT :: (forall b. Data b => b -> b) -> UndeleteDataSetRequest -> UndeleteDataSetRequest

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> UndeleteDataSetRequest -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> UndeleteDataSetRequest -> r

gmapQ :: (forall d. Data d => d -> u) -> UndeleteDataSetRequest -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> UndeleteDataSetRequest -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> UndeleteDataSetRequest -> m UndeleteDataSetRequest

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> UndeleteDataSetRequest -> m UndeleteDataSetRequest

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> UndeleteDataSetRequest -> m UndeleteDataSetRequest

Show UndeleteDataSetRequest

Methods

showsPrec :: Int -> UndeleteDataSetRequest -> ShowS

show :: UndeleteDataSetRequest -> String

showList :: [UndeleteDataSetRequest] -> ShowS

Generic UndeleteDataSetRequest

Associated Types

type Rep UndeleteDataSetRequest :: * -> *

Methods

from :: UndeleteDataSetRequest -> Rep UndeleteDataSetRequest x

to :: Rep UndeleteDataSetRequest x -> UndeleteDataSetRequest

ToJSON UndeleteDataSetRequest

Methods

toJSON :: UndeleteDataSetRequest -> Value

toEncoding :: UndeleteDataSetRequest -> Encoding

toJSONList :: [UndeleteDataSetRequest] -> Value

toEncodingList :: [UndeleteDataSetRequest] -> Encoding

FromJSON UndeleteDataSetRequest

Methods

parseJSON :: Value -> Parser UndeleteDataSetRequest

parseJSONList :: Value -> Parser [UndeleteDataSetRequest]

type Rep UndeleteDataSetRequest

type Rep UndeleteDataSetRequest = D1 (MetaData "UndeleteDataSetRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "UndeleteDataSetRequest'" PrefixI False) U1)

undeleteDataSetRequest :: UndeleteDataSetRequest

Creates a value of UndeleteDataSetRequest with the minimum fields required to make a request.

Binding

data Binding

Associates `members` with a `role`.

See: binding smart constructor.

Instances

Eq Binding

Methods

(==) :: Binding -> Binding -> Bool

(/=) :: Binding -> Binding -> Bool

Data Binding

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Binding -> c Binding

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Binding

toConstr :: Binding -> Constr

dataTypeOf :: Binding -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Binding)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Binding)

gmapT :: (forall b. Data b => b -> b) -> Binding -> Binding

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Binding -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Binding -> r

gmapQ :: (forall d. Data d => d -> u) -> Binding -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Binding -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Binding -> m Binding

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Binding -> m Binding

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Binding -> m Binding

Show Binding

Methods

showsPrec :: Int -> Binding -> ShowS

show :: Binding -> String

showList :: [Binding] -> ShowS

Generic Binding

Associated Types

type Rep Binding :: * -> *

Methods

from :: Binding -> Rep Binding x

to :: Rep Binding x -> Binding

ToJSON Binding

Methods

toJSON :: Binding -> Value

toEncoding :: Binding -> Encoding

toJSONList :: [Binding] -> Value

toEncodingList :: [Binding] -> Encoding

FromJSON Binding

Methods

parseJSON :: Value -> Parser Binding

parseJSONList :: Value -> Parser [Binding]

type Rep Binding

type Rep Binding = D1 (MetaData "Binding" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Binding'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_bMembers") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_bRole") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

binding :: Binding

Creates a value of Binding with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• bMembers
• bRole

bMembers :: Lens' Binding [Text]

Specifies the identities requesting access for a Cloud Platform resource. `members` can have the following values: * `allUsers`: A special identifier that represents anyone who is on the internet; with or without a Google account. * `allAuthenticatedUsers`: A special identifier that represents anyone who is authenticated with a Google account or a service account. * `user:{emailid}`: An email address that represents a specific Google account. For example, `alice'gmail.com` or `joe'example.com`. * `serviceAccount:{emailid}`: An email address that represents a service account. For example, `my-other-app'appspot.gserviceaccount.com`. * `group:{emailid}`: An email address that represents a Google group. For example, `admins'example.com`. * `domain:{domain}`: A Google Apps domain name that represents all the users of that domain. For example, `google.com` or `example.com`.

bRole :: Lens' Binding (Maybe Text)

Role that is assigned to `members`. For example, `roles/viewer`, `roles/editor`, or `roles/owner`. Required

Position

data Position

An abstraction for referring to a genomic position, in relation to some already known reference. For now, represents a genomic position as a reference name, a base number on that reference (0-based), and a determination of forward or reverse strand.

See: position smart constructor.

Instances

Eq Position

Methods

(==) :: Position -> Position -> Bool

(/=) :: Position -> Position -> Bool

Data Position

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Position -> c Position

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Position

toConstr :: Position -> Constr

dataTypeOf :: Position -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c Position)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Position)

gmapT :: (forall b. Data b => b -> b) -> Position -> Position

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Position -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Position -> r

gmapQ :: (forall d. Data d => d -> u) -> Position -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> Position -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> Position -> m Position

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Position -> m Position

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Position -> m Position

Show Position

Methods

showsPrec :: Int -> Position -> ShowS

show :: Position -> String

showList :: [Position] -> ShowS

Generic Position

Associated Types

type Rep Position :: * -> *

Methods

from :: Position -> Rep Position x

to :: Rep Position x -> Position

ToJSON Position

Methods

toJSON :: Position -> Value

toEncoding :: Position -> Encoding

toJSONList :: [Position] -> Value

toEncodingList :: [Position] -> Encoding

FromJSON Position

Methods

parseJSON :: Value -> Parser Position

parseJSONList :: Value -> Parser [Position]

type Rep Position

type Rep Position = D1 (MetaData "Position" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "Position'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_pReverseStrand") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))) ((:*:) (S1 (MetaSel (Just Symbol "_pReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_pPosition") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))))))

position :: Position

Creates a value of Position with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• pReverseStrand
• pReferenceName
• pPosition

pReverseStrand :: Lens' Position (Maybe Bool)

Whether this position is on the reverse strand, as opposed to the forward strand.

pReferenceName :: Lens' Position (Maybe Text)

The name of the reference in whatever reference set is being used.

pPosition :: Lens' Position (Maybe Int64)

The 0-based offset from the start of the forward strand for that reference.

RuntimeMetadata

data RuntimeMetadata

Runtime metadata that will be populated in the runtimeMetadata field of the Operation associated with a RunPipeline execution.

See: runtimeMetadata smart constructor.

Instances

Eq RuntimeMetadata

Methods

(==) :: RuntimeMetadata -> RuntimeMetadata -> Bool

(/=) :: RuntimeMetadata -> RuntimeMetadata -> Bool

Data RuntimeMetadata

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> RuntimeMetadata -> c RuntimeMetadata

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c RuntimeMetadata

toConstr :: RuntimeMetadata -> Constr

dataTypeOf :: RuntimeMetadata -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c RuntimeMetadata)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c RuntimeMetadata)

gmapT :: (forall b. Data b => b -> b) -> RuntimeMetadata -> RuntimeMetadata

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> RuntimeMetadata -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> RuntimeMetadata -> r

gmapQ :: (forall d. Data d => d -> u) -> RuntimeMetadata -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> RuntimeMetadata -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> RuntimeMetadata -> m RuntimeMetadata

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> RuntimeMetadata -> m RuntimeMetadata

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> RuntimeMetadata -> m RuntimeMetadata

Show RuntimeMetadata

Methods

showsPrec :: Int -> RuntimeMetadata -> ShowS

show :: RuntimeMetadata -> String

showList :: [RuntimeMetadata] -> ShowS

Generic RuntimeMetadata

Associated Types

type Rep RuntimeMetadata :: * -> *

Methods

from :: RuntimeMetadata -> Rep RuntimeMetadata x

to :: Rep RuntimeMetadata x -> RuntimeMetadata

ToJSON RuntimeMetadata

Methods

toJSON :: RuntimeMetadata -> Value

toEncoding :: RuntimeMetadata -> Encoding

toJSONList :: [RuntimeMetadata] -> Value

toEncodingList :: [RuntimeMetadata] -> Encoding

FromJSON RuntimeMetadata

Methods

parseJSON :: Value -> Parser RuntimeMetadata

parseJSONList :: Value -> Parser [RuntimeMetadata]

type Rep RuntimeMetadata

type Rep RuntimeMetadata = D1 (MetaData "RuntimeMetadata" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "RuntimeMetadata'" PrefixI True) (S1 (MetaSel (Just Symbol "_rmComputeEngine") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe ComputeEngine))))

runtimeMetadata :: RuntimeMetadata

Creates a value of RuntimeMetadata with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• rmComputeEngine

rmComputeEngine :: Lens' RuntimeMetadata (Maybe ComputeEngine)

Execution information specific to Google Compute Engine.

SearchReadGroupSetsResponse

data SearchReadGroupSetsResponse

The read group set search response.

See: searchReadGroupSetsResponse smart constructor.

Instances

Eq SearchReadGroupSetsResponse

Methods

(==) :: SearchReadGroupSetsResponse -> SearchReadGroupSetsResponse -> Bool

(/=) :: SearchReadGroupSetsResponse -> SearchReadGroupSetsResponse -> Bool

Data SearchReadGroupSetsResponse

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReadGroupSetsResponse -> c SearchReadGroupSetsResponse

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReadGroupSetsResponse

toConstr :: SearchReadGroupSetsResponse -> Constr

dataTypeOf :: SearchReadGroupSetsResponse -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReadGroupSetsResponse)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReadGroupSetsResponse)

gmapT :: (forall b. Data b => b -> b) -> SearchReadGroupSetsResponse -> SearchReadGroupSetsResponse

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadGroupSetsResponse -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadGroupSetsResponse -> r

gmapQ :: (forall d. Data d => d -> u) -> SearchReadGroupSetsResponse -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReadGroupSetsResponse -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsResponse -> m SearchReadGroupSetsResponse

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsResponse -> m SearchReadGroupSetsResponse

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsResponse -> m SearchReadGroupSetsResponse

Show SearchReadGroupSetsResponse

Methods

showsPrec :: Int -> SearchReadGroupSetsResponse -> ShowS

show :: SearchReadGroupSetsResponse -> String

showList :: [SearchReadGroupSetsResponse] -> ShowS

Generic SearchReadGroupSetsResponse

Associated Types

type Rep SearchReadGroupSetsResponse :: * -> *

Methods

from :: SearchReadGroupSetsResponse -> Rep SearchReadGroupSetsResponse x

to :: Rep SearchReadGroupSetsResponse x -> SearchReadGroupSetsResponse

ToJSON SearchReadGroupSetsResponse

Methods

toJSON :: SearchReadGroupSetsResponse -> Value

toEncoding :: SearchReadGroupSetsResponse -> Encoding

toJSONList :: [SearchReadGroupSetsResponse] -> Value

toEncodingList :: [SearchReadGroupSetsResponse] -> Encoding

FromJSON SearchReadGroupSetsResponse

Methods

parseJSON :: Value -> Parser SearchReadGroupSetsResponse

parseJSONList :: Value -> Parser [SearchReadGroupSetsResponse]

type Rep SearchReadGroupSetsResponse

type Rep SearchReadGroupSetsResponse = D1 (MetaData "SearchReadGroupSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "SearchReadGroupSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_srgsrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_srgsrReadGroupSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ReadGroupSet])))))

searchReadGroupSetsResponse :: SearchReadGroupSetsResponse

Creates a value of SearchReadGroupSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• srgsrNextPageToken
• srgsrReadGroupSets

srgsrNextPageToken :: Lens' SearchReadGroupSetsResponse (Maybe Text)

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

srgsrReadGroupSets :: Lens' SearchReadGroupSetsResponse [ReadGroupSet]

The list of matching read group sets.

ReadGroupSetInfo

data ReadGroupSetInfo

A map of additional read group set information.

See: readGroupSetInfo smart constructor.

Instances

Eq ReadGroupSetInfo

Methods

(==) :: ReadGroupSetInfo -> ReadGroupSetInfo -> Bool

(/=) :: ReadGroupSetInfo -> ReadGroupSetInfo -> Bool

Data ReadGroupSetInfo

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReadGroupSetInfo -> c ReadGroupSetInfo

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReadGroupSetInfo

toConstr :: ReadGroupSetInfo -> Constr

dataTypeOf :: ReadGroupSetInfo -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ReadGroupSetInfo)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReadGroupSetInfo)

gmapT :: (forall b. Data b => b -> b) -> ReadGroupSetInfo -> ReadGroupSetInfo

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupSetInfo -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupSetInfo -> r

gmapQ :: (forall d. Data d => d -> u) -> ReadGroupSetInfo -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ReadGroupSetInfo -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReadGroupSetInfo -> m ReadGroupSetInfo

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupSetInfo -> m ReadGroupSetInfo

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupSetInfo -> m ReadGroupSetInfo

Show ReadGroupSetInfo

Methods

showsPrec :: Int -> ReadGroupSetInfo -> ShowS

show :: ReadGroupSetInfo -> String

showList :: [ReadGroupSetInfo] -> ShowS

Generic ReadGroupSetInfo

Associated Types

type Rep ReadGroupSetInfo :: * -> *

Methods

from :: ReadGroupSetInfo -> Rep ReadGroupSetInfo x

to :: Rep ReadGroupSetInfo x -> ReadGroupSetInfo

ToJSON ReadGroupSetInfo

Methods

toJSON :: ReadGroupSetInfo -> Value

toEncoding :: ReadGroupSetInfo -> Encoding

toJSONList :: [ReadGroupSetInfo] -> Value

toEncodingList :: [ReadGroupSetInfo] -> Encoding

FromJSON ReadGroupSetInfo

Methods

parseJSON :: Value -> Parser ReadGroupSetInfo

parseJSONList :: Value -> Parser [ReadGroupSetInfo]

type Rep ReadGroupSetInfo

type Rep ReadGroupSetInfo = D1 (MetaData "ReadGroupSetInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" True) (C1 (MetaCons "ReadGroupSetInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_rgsiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

readGroupSetInfo

Arguments

:: HashMap Text [JSONValue]

rgsiAddtional

-> ReadGroupSetInfo

Creates a value of ReadGroupSetInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• rgsiAddtional

rgsiAddtional :: Lens' ReadGroupSetInfo (HashMap Text [JSONValue])

ReferenceSet

data ReferenceSet

A reference set is a set of references which typically comprise a reference assembly for a species, such as `GRCh38` which is representative of the human genome. A reference set defines a common coordinate space for comparing reference-aligned experimental data. A reference set contains 1 or more references. For more genomics resource definitions, see Fundamentals of Google Genomics

See: referenceSet smart constructor.

Instances

Eq ReferenceSet

Methods

(==) :: ReferenceSet -> ReferenceSet -> Bool

(/=) :: ReferenceSet -> ReferenceSet -> Bool

Data ReferenceSet

Methods

gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReferenceSet -> c ReferenceSet

gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReferenceSet

toConstr :: ReferenceSet -> Constr

dataTypeOf :: ReferenceSet -> DataType

dataCast1 :: Typeable (* -> *) t => (forall d. Data d => c (t d)) -> Maybe (c ReferenceSet)

dataCast2 :: Typeable (* -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReferenceSet)

gmapT :: (forall b. Data b => b -> b) -> ReferenceSet -> ReferenceSet

gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReferenceSet -> r

gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReferenceSet -> r

gmapQ :: (forall d. Data d => d -> u) -> ReferenceSet -> [u]

gmapQi :: Int -> (forall d. Data d => d -> u) -> ReferenceSet -> u

gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReferenceSet -> m ReferenceSet

gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReferenceSet -> m ReferenceSet

gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReferenceSet -> m ReferenceSet

Show ReferenceSet

Methods

showsPrec :: Int -> ReferenceSet -> ShowS

show :: ReferenceSet -> String

showList :: [ReferenceSet] -> ShowS

Generic ReferenceSet

Associated Types

type Rep ReferenceSet :: * -> *

Methods

from :: ReferenceSet -> Rep ReferenceSet x

to :: Rep ReferenceSet x -> ReferenceSet

ToJSON ReferenceSet

Methods

toJSON :: ReferenceSet -> Value

toEncoding :: ReferenceSet -> Encoding

toJSONList :: [ReferenceSet] -> Value

toEncodingList :: [ReferenceSet] -> Encoding

FromJSON ReferenceSet

Methods

parseJSON :: Value -> Parser ReferenceSet

parseJSONList :: Value -> Parser [ReferenceSet]

type Rep ReferenceSet

type Rep ReferenceSet = D1 (MetaData "ReferenceSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.2.0-DiUW9lmfsxKE6fYnbPOsRD" False) (C1 (MetaCons "ReferenceSet'" PrefixI True) ((:*:) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_rsSourceAccessions") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_rsReferenceIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((:*:) (S1 (MetaSel (Just Symbol "_rsMD5checksum") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rsNcbiTaxonId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))) ((:*:) ((:*:) (S1 (MetaSel (Just Symbol "_rsId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rsAssemblyId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_rsSourceURI") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rsDescription") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

referenceSet :: ReferenceSet

Creates a value of ReferenceSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

• rsSourceAccessions
• rsReferenceIds
• rsMD5checksum
• rsNcbiTaxonId
• rsId
• rsAssemblyId
• rsSourceURI
• rsDescription

rsSourceAccessions :: Lens' ReferenceSet [Text]

All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `NC_000001.11`.

rsReferenceIds :: Lens' ReferenceSet [Text]

The IDs of the reference objects that are part of this set. `Reference.md5checksum` must be unique within this set.

rsMD5checksum :: Lens' ReferenceSet (Maybe Text)

Order-independent MD5 checksum which identifies this reference set. The checksum is computed by sorting all lower case hexidecimal string `reference.md5checksum` (for all reference in this set) in ascending lexicographic order, concatenating, and taking the MD5 of that value. The resulting value is represented in lower case hexadecimal format.

rsNcbiTaxonId :: Lens' ReferenceSet (Maybe Int32)

ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human) indicating the species which this reference set is intended to model. Note that contained references may specify a different `ncbiTaxonId`, as assemblies may contain reference sequences which do not belong to the modeled species, for example EBV in a human reference genome.

rsId :: Lens' ReferenceSet (Maybe Text)

The server-generated reference set ID, unique across all reference sets.

rsAssemblyId :: Lens' ReferenceSet (Maybe Text)

Public id of this reference set, such as `GRCh37`.

rsSourceURI :: Lens' ReferenceSet (Maybe Text)

The URI from which the references were obtained.

rsDescription :: Lens' ReferenceSet (Maybe Text)

Free text description of this reference set.