heatitup-complete: Find and annotate ITDs with assembly or read pair joining.
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.
| Versions [faq] | 0.5.3.3, 0.5.4.0, 0.5.4.1, 0.5.5.0 |
|---|---|
| Dependencies | base (>=4.7 && <5), bytestring, cassava, containers, fasta, foldl, heatitup-complete, lens, optparse-applicative, pipes, pipes-text, safe, text, text-show, turtle, vector [details] |
| License | GPL-3.0-only |
| Copyright | Copyright: (c) 2019 Gregory W. Schwartz |
| Author | Gregory W. Schwartz |
| Maintainer | gsch@pennmedicine.upenn.edu |
| Category | Bioinformatics |
| Home page | http://github.com/GregorySchwartz/heatitup-complete#readme |
| Source repo | head: git clone https://github.com/GregorySchwartz/heatitup-complete |
| Uploaded | by GregorySchwartz at 2020-02-17T15:59:17Z |
| Distributions | NixOS:0.5.5.0 |
| Executables | heatitup-complete |
| Downloads | 1011 total (76 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs not available [build log] All reported builds failed as of 2020-02-17 [all 3 reports] |
Modules
- Blast
- Merge
- Parse
- Types
- Utility
Downloads
- heatitup-complete-0.5.5.0.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)