heatitup-complete: Find and annotate ITDs with assembly or read pair joining.
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.
| Versions [faq] | 0.5.3.3, 0.5.4.0 |
|---|---|
| Dependencies | base (>=4.7 && <5), bytestring, cassava, containers, fasta, foldl, heatitup-complete, lens, optparse-applicative, pipes, pipes-text, safe, text, text-show, turtle, vector [details] |
| License | GPL-3.0-only |
| Copyright | Copyright: (c) 2019 Gregory W. Schwartz |
| Author | Gregory W. Schwartz |
| Maintainer | gsch@pennmedicine.upenn.edu |
| Category | Bioinformatics |
| Home page | http://github.com/GregorySchwartz/heatitup-complete#readme |
| Source repo | head: git clone https://github.com/GregorySchwartz/heatitup-complete |
| Uploaded | by GregorySchwartz at Thu Jun 13 19:07:10 UTC 2019 |
| Distributions | NixOS:0.5.4.0 |
| Executables | heatitup-complete |
| Downloads | 234 total (24 in the last 30 days) |
| Rating | (no votes yet) [estimated by rule of succession] |
| Your Rating | |
| Status | Docs not available [build log] All reported builds failed as of 2019-06-13 [all 3 reports] |
Modules
- Blast
- Merge
- Parse
- Types
- Utility
Downloads
- heatitup-complete-0.5.4.0.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)