heatitup-complete: Find and annotate ITDs with assembly or read pair joining.
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.
| Versions | 0.5.3.3 |
|---|---|
| Dependencies | base (>=4.7 && <5), bytestring, cassava, containers, fasta, foldl, heatitup-complete, lens, optparse-applicative, pipes, pipes-text, safe, text, text-show, turtle, vector [details] |
| License | GPL-3.0-only |
| Copyright | Copyright: (c) 2018 Gregory W. Schwartz |
| Author | Gregory W. Schwartz |
| Maintainer | gsch@pennmedicine.upenn.edu |
| Category | Bioinformatics |
| Home page | http://github.com/GregorySchwartz/heatitup-complete#readme |
| Source repo | head: git clone https://github.com/GregorySchwartz/heatitup-complete |
| Uploaded | by GregorySchwartz at Tue Aug 28 19:21:39 UTC 2018 |
| Distributions | NixOS:0.5.3.3 |
| Executables | heatitup-complete |
| Downloads | 29 total (29 in the last 30 days) |
| Rating | (no votes yet) [estimated by rule of succession] |
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| Status | Docs available [build log] Last success reported on 2018-08-28 [all 1 reports] Hackage Matrix CI |
Downloads
- heatitup-complete-0.5.3.3.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)