heatitup-complete: Find and annotate ITDs with assembly or read pair joining.

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.

Versions [faq]
Dependencies base (>=4.7 && <5), bytestring, cassava, containers, fasta, foldl, heatitup-complete, lens, optparse-applicative, pipes, pipes-text, safe, text, text-show, turtle, vector [details]
License GPL-3.0-only
Copyright Copyright: (c) 2018 Gregory W. Schwartz
Author Gregory W. Schwartz
Maintainer gsch@pennmedicine.upenn.edu
Category Bioinformatics
Home page http://github.com/GregorySchwartz/heatitup-complete#readme
Source repo head: git clone https://github.com/GregorySchwartz/heatitup-complete
Uploaded by GregorySchwartz at Tue Aug 28 19:21:39 UTC 2018
Distributions NixOS:
Executables heatitup-complete
Downloads 127 total (27 in the last 30 days)
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Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2018-08-28 [all 1 reports]


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