heatitup-complete: Find and annotate ITDs with assembly or read pair joining.

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.

Versions [faq] 0.5.3.3, 0.5.4.0
Dependencies base (>=4.7 && <5), bytestring, cassava, containers, fasta, foldl, heatitup-complete, lens, optparse-applicative, pipes, pipes-text, safe, text, text-show, turtle, vector [details]
License GPL-3.0-only
Copyright Copyright: (c) 2019 Gregory W. Schwartz
Author Gregory W. Schwartz
Maintainer gsch@pennmedicine.upenn.edu
Category Bioinformatics
Home page http://github.com/GregorySchwartz/heatitup-complete#readme
Source repo head: git clone https://github.com/GregorySchwartz/heatitup-complete
Uploaded by GregorySchwartz at Thu Jun 13 19:07:10 UTC 2019
Distributions NixOS:0.5.4.0
Executables heatitup-complete
Downloads 234 total (24 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
All reported builds failed as of 2019-06-13 [all 3 reports]

Modules

  • Blast
  • Merge
  • Parse
  • Types
  • Utility

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