Data.BAM.Version1_6.BAM.Alignment.OptionalFields.AOPT

WARNING

This module is considered internal.

The Package Versioning Policy does not apply.

The contents of this module may change in any way whatsoever and without any warning between minor versions of this package.

Authors importing this library are expected to track development closely.

All credit goes to the author(s)/maintainer(s) of the containers library for the above warning text.

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

BAM version 1.6 alignment optional fields data type

data BAM_V1_6_BAM_Alignment_OptionalFields_AOPT

Custom BAM (version 1.6) BAM_V1_6_Alignment_OptionalFields_AOPT data type.

See section 4.2 of the SAM v1.6 specification documentation.

Constructors

BAM_V1_6_BAM_Alignment_OptionalFields_AOPT

Fields

• bam_v1_6_bam_alignment_optionalfields_aopt_tag :: ByteString
• bam_v1_6_bam_alignment_optionalfields_aopt_value :: Word8

Instances

Generic BAM_V1_6_BAM_Alignment_OptionalFields_AOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.AOPT

Associated Types

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_AOPT :: Type -> Type

Methods

from :: BAM_V1_6_BAM_Alignment_OptionalFields_AOPT -> Rep BAM_V1_6_BAM_Alignment_OptionalFields_AOPT x

to :: Rep BAM_V1_6_BAM_Alignment_OptionalFields_AOPT x -> BAM_V1_6_BAM_Alignment_OptionalFields_AOPT

Show BAM_V1_6_BAM_Alignment_OptionalFields_AOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.AOPT

Methods

showsPrec :: Int -> BAM_V1_6_BAM_Alignment_OptionalFields_AOPT -> ShowS

show :: BAM_V1_6_BAM_Alignment_OptionalFields_AOPT -> String

showList :: [BAM_V1_6_BAM_Alignment_OptionalFields_AOPT] -> ShowS

Eq BAM_V1_6_BAM_Alignment_OptionalFields_AOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.AOPT

Methods

(==) :: BAM_V1_6_BAM_Alignment_OptionalFields_AOPT -> BAM_V1_6_BAM_Alignment_OptionalFields_AOPT -> Bool

(/=) :: BAM_V1_6_BAM_Alignment_OptionalFields_AOPT -> BAM_V1_6_BAM_Alignment_OptionalFields_AOPT -> Bool

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_AOPT

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.AOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_AOPT = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_AOPT" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.AOPT" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_Alignment_OptionalFields_AOPT" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_aopt_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_aopt_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Word8)))