hs-samtools-0.10.0.3: Read and write SAM, BAM, and CRAM files.
Copyright(c) Matthew Mosior 2024
LicenseBSD-style
Maintainermattm.github@gmail.com
Portabilityportable
Safe HaskellSafe-Inferred
LanguageHaskell2010

Data.BAM.Version1_6.BAM.Alignment.OptionalFields.SmallCOPT

Description

WARNING

This module is considered internal.

The Package Versioning Policy does not apply.

The contents of this module may change in any way whatsoever and without any warning between minor versions of this package.

Authors importing this library are expected to track development closely.

All credit goes to the author(s)/maintainer(s) of the containers library for the above warning text.

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

Synopsis

BAM version 1.6 alignment optional fields data type

data BAM_V1_6_BAM_Alignment_OptionalFields_SmallCOPT Source #

Custom BAM (version 1.6) BAM_V1_6_Alignment_OptionalFields_SmallCOPT data type.

See section 4.2 of the SAM v1.6 specification documentation.

Instances

Instances details
Generic BAM_V1_6_BAM_Alignment_OptionalFields_SmallCOPT Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.SmallCOPT

Show BAM_V1_6_BAM_Alignment_OptionalFields_SmallCOPT Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.SmallCOPT

Eq BAM_V1_6_BAM_Alignment_OptionalFields_SmallCOPT Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.SmallCOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_SmallCOPT Source # 
Instance details

Defined in Data.BAM.Version1_6.BAM.Alignment.OptionalFields.SmallCOPT

type Rep BAM_V1_6_BAM_Alignment_OptionalFields_SmallCOPT = D1 ('MetaData "BAM_V1_6_BAM_Alignment_OptionalFields_SmallCOPT" "Data.BAM.Version1_6.BAM.Alignment.OptionalFields.SmallCOPT" "hs-samtools-0.10.0.3-inplace" 'False) (C1 ('MetaCons "BAM_V1_6_BAM_Alignment_OptionalFields_SmallCOPT" 'PrefixI 'True) (S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_smallcopt_tag") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 ByteString) :*: S1 ('MetaSel ('Just "bam_v1_6_bam_alignment_optionalfields_smallcopt_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedStrict) (Rec0 Int8)))