Data.SAM.Version1_6.Header.RG

Description

This library enables the decoding/encoding of SAM, BAM and CRAM file formats.

SAM version 1.6 Read group data type

data SAM_V1_6_Read_Group

Custom SAM (version 1.6) SAM_V1_6_Read_Group data type.

See section 1.3 of the SAM v1.6 specification documentation.

Constructors

SAM_V1_6_Read_Group

Fields

• sam_v1_6_read_group_identifier :: SAM_V1_6_Read_Group_Identifier
• sam_v1_6_read_group_barcode_sequence :: Maybe SAM_V1_6_Read_Group_Barcode_Sequence
• sam_v1_6_read_group_sequencing_center :: Maybe SAM_V1_6_Read_Group_Sequencing_Center
• sam_v1_6_read_group_description :: Maybe SAM_V1_6_Read_Group_Description
• sam_v1_6_read_group_run_date :: Maybe SAM_V1_6_Read_Group_Run_Date
• sam_v1_6_read_group_flow_order :: Maybe SAM_V1_6_Read_Group_Flow_Order
• sam_v1_6_read_group_key_sequence :: Maybe SAM_V1_6_Read_Group_Key_Sequence
• sam_v1_6_read_group_library :: Maybe SAM_V1_6_Read_Group_Library
• sam_v1_6_read_group_programs :: Maybe SAM_V1_6_Read_Group_Programs
• sam_v1_6_read_group_predicted_median_insert_size :: Maybe SAM_V1_6_Read_Group_Predicted_Median_Insert_Size
• sam_v1_6_read_group_platform :: Maybe SAM_V1_6_Read_Group_Platform
• sam_v1_6_read_group_platform_model :: Maybe SAM_V1_6_Read_Group_Platform_Model
• sam_v1_6_read_group_platform_unit :: Maybe SAM_V1_6_Read_Group_Platform_Unit
• sam_v1_6_read_group_sample :: Maybe SAM_V1_6_Read_Group_Sample

Instances

Generic SAM_V1_6_Read_Group

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group -> Rep SAM_V1_6_Read_Group x

to :: Rep SAM_V1_6_Read_Group x -> SAM_V1_6_Read_Group

Show SAM_V1_6_Read_Group

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group -> ShowS

show :: SAM_V1_6_Read_Group -> String

showList :: [SAM_V1_6_Read_Group] -> ShowS

Eq SAM_V1_6_Read_Group

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group -> SAM_V1_6_Read_Group -> Bool

(/=) :: SAM_V1_6_Read_Group -> SAM_V1_6_Read_Group -> Bool

type Rep SAM_V1_6_Read_Group

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group = D1 ('MetaData "SAM_V1_6_Read_Group" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'False) (C1 ('MetaCons "SAM_V1_6_Read_Group" 'PrefixI 'True) (((S1 ('MetaSel ('Just "sam_v1_6_read_group_identifier") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 SAM_V1_6_Read_Group_Identifier) :*: (S1 ('MetaSel ('Just "sam_v1_6_read_group_barcode_sequence") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Barcode_Sequence)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_sequencing_center") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Sequencing_Center)))) :*: ((S1 ('MetaSel ('Just "sam_v1_6_read_group_description") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Description)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_run_date") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Run_Date))) :*: (S1 ('MetaSel ('Just "sam_v1_6_read_group_flow_order") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Flow_Order)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_key_sequence") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Key_Sequence))))) :*: ((S1 ('MetaSel ('Just "sam_v1_6_read_group_library") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Library)) :*: (S1 ('MetaSel ('Just "sam_v1_6_read_group_programs") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Programs)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_predicted_median_insert_size") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Predicted_Median_Insert_Size)))) :*: ((S1 ('MetaSel ('Just "sam_v1_6_read_group_platform") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Platform)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_model") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Platform_Model))) :*: (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_unit") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Platform_Unit)) :*: S1 ('MetaSel ('Just "sam_v1_6_read_group_sample") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 (Maybe SAM_V1_6_Read_Group_Sample)))))))

SAM version 1.6 Read group data types

newtype SAM_V1_6_Read_Group_Identifier

ID tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Identifier

Fields

• sam_v1_6_read_group_identifier_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Identifier

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Identifier :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Identifier -> Rep SAM_V1_6_Read_Group_Identifier x

to :: Rep SAM_V1_6_Read_Group_Identifier x -> SAM_V1_6_Read_Group_Identifier

Show SAM_V1_6_Read_Group_Identifier

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Identifier -> ShowS

show :: SAM_V1_6_Read_Group_Identifier -> String

showList :: [SAM_V1_6_Read_Group_Identifier] -> ShowS

Eq SAM_V1_6_Read_Group_Identifier

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Identifier -> SAM_V1_6_Read_Group_Identifier -> Bool

(/=) :: SAM_V1_6_Read_Group_Identifier -> SAM_V1_6_Read_Group_Identifier -> Bool

type Rep SAM_V1_6_Read_Group_Identifier

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Identifier = D1 ('MetaData "SAM_V1_6_Read_Group_Identifier" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Identifier" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_identifier_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Barcode_Sequence

BC tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Barcode_Sequence

Fields

• sam_v1_6_read_group_barcode_sequence_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Barcode_Sequence

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Barcode_Sequence :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Barcode_Sequence -> Rep SAM_V1_6_Read_Group_Barcode_Sequence x

to :: Rep SAM_V1_6_Read_Group_Barcode_Sequence x -> SAM_V1_6_Read_Group_Barcode_Sequence

Show SAM_V1_6_Read_Group_Barcode_Sequence

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Barcode_Sequence -> ShowS

show :: SAM_V1_6_Read_Group_Barcode_Sequence -> String

showList :: [SAM_V1_6_Read_Group_Barcode_Sequence] -> ShowS

Eq SAM_V1_6_Read_Group_Barcode_Sequence

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Barcode_Sequence -> SAM_V1_6_Read_Group_Barcode_Sequence -> Bool

(/=) :: SAM_V1_6_Read_Group_Barcode_Sequence -> SAM_V1_6_Read_Group_Barcode_Sequence -> Bool

type Rep SAM_V1_6_Read_Group_Barcode_Sequence

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Barcode_Sequence = D1 ('MetaData "SAM_V1_6_Read_Group_Barcode_Sequence" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Barcode_Sequence" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_barcode_sequence_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Sequencing_Center

CN tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Sequencing_Center

Fields

• sam_v1_6_read_group_sequencing_center_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Sequencing_Center

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Sequencing_Center :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Sequencing_Center -> Rep SAM_V1_6_Read_Group_Sequencing_Center x

to :: Rep SAM_V1_6_Read_Group_Sequencing_Center x -> SAM_V1_6_Read_Group_Sequencing_Center

Show SAM_V1_6_Read_Group_Sequencing_Center

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Sequencing_Center -> ShowS

show :: SAM_V1_6_Read_Group_Sequencing_Center -> String

showList :: [SAM_V1_6_Read_Group_Sequencing_Center] -> ShowS

Eq SAM_V1_6_Read_Group_Sequencing_Center

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Sequencing_Center -> SAM_V1_6_Read_Group_Sequencing_Center -> Bool

(/=) :: SAM_V1_6_Read_Group_Sequencing_Center -> SAM_V1_6_Read_Group_Sequencing_Center -> Bool

type Rep SAM_V1_6_Read_Group_Sequencing_Center

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Sequencing_Center = D1 ('MetaData "SAM_V1_6_Read_Group_Sequencing_Center" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Sequencing_Center" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_sequencing_center_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Description

DS tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Description

Fields

• sam_v1_6_read_group_description_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Description

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Description :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Description -> Rep SAM_V1_6_Read_Group_Description x

to :: Rep SAM_V1_6_Read_Group_Description x -> SAM_V1_6_Read_Group_Description

Show SAM_V1_6_Read_Group_Description

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Description -> ShowS

show :: SAM_V1_6_Read_Group_Description -> String

showList :: [SAM_V1_6_Read_Group_Description] -> ShowS

Eq SAM_V1_6_Read_Group_Description

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Description -> SAM_V1_6_Read_Group_Description -> Bool

(/=) :: SAM_V1_6_Read_Group_Description -> SAM_V1_6_Read_Group_Description -> Bool

type Rep SAM_V1_6_Read_Group_Description

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Description = D1 ('MetaData "SAM_V1_6_Read_Group_Description" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Description" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_description_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Run_Date

DT tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Run_Date

Fields

• sam_v1_6_read_group_run_date_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Run_Date

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Run_Date :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Run_Date -> Rep SAM_V1_6_Read_Group_Run_Date x

to :: Rep SAM_V1_6_Read_Group_Run_Date x -> SAM_V1_6_Read_Group_Run_Date

Show SAM_V1_6_Read_Group_Run_Date

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Run_Date -> ShowS

show :: SAM_V1_6_Read_Group_Run_Date -> String

showList :: [SAM_V1_6_Read_Group_Run_Date] -> ShowS

Eq SAM_V1_6_Read_Group_Run_Date

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Run_Date -> SAM_V1_6_Read_Group_Run_Date -> Bool

(/=) :: SAM_V1_6_Read_Group_Run_Date -> SAM_V1_6_Read_Group_Run_Date -> Bool

type Rep SAM_V1_6_Read_Group_Run_Date

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Run_Date = D1 ('MetaData "SAM_V1_6_Read_Group_Run_Date" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Run_Date" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_run_date_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Flow_Order

FO tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Flow_Order

Fields

• sam_v1_6_read_group_flow_order_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Flow_Order

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Flow_Order :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Flow_Order -> Rep SAM_V1_6_Read_Group_Flow_Order x

to :: Rep SAM_V1_6_Read_Group_Flow_Order x -> SAM_V1_6_Read_Group_Flow_Order

Show SAM_V1_6_Read_Group_Flow_Order

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Flow_Order -> ShowS

show :: SAM_V1_6_Read_Group_Flow_Order -> String

showList :: [SAM_V1_6_Read_Group_Flow_Order] -> ShowS

Eq SAM_V1_6_Read_Group_Flow_Order

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Flow_Order -> SAM_V1_6_Read_Group_Flow_Order -> Bool

(/=) :: SAM_V1_6_Read_Group_Flow_Order -> SAM_V1_6_Read_Group_Flow_Order -> Bool

type Rep SAM_V1_6_Read_Group_Flow_Order

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Flow_Order = D1 ('MetaData "SAM_V1_6_Read_Group_Flow_Order" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Flow_Order" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_flow_order_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Key_Sequence

KS tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Key_Sequence

Fields

• sam_v1_6_read_group_key_sequence_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Key_Sequence

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Key_Sequence :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Key_Sequence -> Rep SAM_V1_6_Read_Group_Key_Sequence x

to :: Rep SAM_V1_6_Read_Group_Key_Sequence x -> SAM_V1_6_Read_Group_Key_Sequence

Show SAM_V1_6_Read_Group_Key_Sequence

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Key_Sequence -> ShowS

show :: SAM_V1_6_Read_Group_Key_Sequence -> String

showList :: [SAM_V1_6_Read_Group_Key_Sequence] -> ShowS

Eq SAM_V1_6_Read_Group_Key_Sequence

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Key_Sequence -> SAM_V1_6_Read_Group_Key_Sequence -> Bool

(/=) :: SAM_V1_6_Read_Group_Key_Sequence -> SAM_V1_6_Read_Group_Key_Sequence -> Bool

type Rep SAM_V1_6_Read_Group_Key_Sequence

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Key_Sequence = D1 ('MetaData "SAM_V1_6_Read_Group_Key_Sequence" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Key_Sequence" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_key_sequence_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Library

LB tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Library

Fields

• sam_v1_6_read_group_library_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Library

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Library :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Library -> Rep SAM_V1_6_Read_Group_Library x

to :: Rep SAM_V1_6_Read_Group_Library x -> SAM_V1_6_Read_Group_Library

Show SAM_V1_6_Read_Group_Library

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Library -> ShowS

show :: SAM_V1_6_Read_Group_Library -> String

showList :: [SAM_V1_6_Read_Group_Library] -> ShowS

Eq SAM_V1_6_Read_Group_Library

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Library -> SAM_V1_6_Read_Group_Library -> Bool

(/=) :: SAM_V1_6_Read_Group_Library -> SAM_V1_6_Read_Group_Library -> Bool

type Rep SAM_V1_6_Read_Group_Library

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Library = D1 ('MetaData "SAM_V1_6_Read_Group_Library" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Library" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_library_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Programs

PG tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Programs

Fields

• sam_v1_6_read_group_programs_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Programs

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Programs :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Programs -> Rep SAM_V1_6_Read_Group_Programs x

to :: Rep SAM_V1_6_Read_Group_Programs x -> SAM_V1_6_Read_Group_Programs

Show SAM_V1_6_Read_Group_Programs

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Programs -> ShowS

show :: SAM_V1_6_Read_Group_Programs -> String

showList :: [SAM_V1_6_Read_Group_Programs] -> ShowS

Eq SAM_V1_6_Read_Group_Programs

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Programs -> SAM_V1_6_Read_Group_Programs -> Bool

(/=) :: SAM_V1_6_Read_Group_Programs -> SAM_V1_6_Read_Group_Programs -> Bool

type Rep SAM_V1_6_Read_Group_Programs

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Programs = D1 ('MetaData "SAM_V1_6_Read_Group_Programs" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Programs" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_programs_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

PI tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Fields

• sam_v1_6_read_group_predicted_median_insert_size_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size x

to :: Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size x -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Show SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> ShowS

show :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> String

showList :: [SAM_V1_6_Read_Group_Predicted_Median_Insert_Size] -> ShowS

Eq SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Bool

(/=) :: SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> SAM_V1_6_Read_Group_Predicted_Median_Insert_Size -> Bool

type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Predicted_Median_Insert_Size = D1 ('MetaData "SAM_V1_6_Read_Group_Predicted_Median_Insert_Size" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Predicted_Median_Insert_Size" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_predicted_median_insert_size_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Platform

PL tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform

Fields

• sam_v1_6_read_group_platform_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Platform

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Platform :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Platform -> Rep SAM_V1_6_Read_Group_Platform x

to :: Rep SAM_V1_6_Read_Group_Platform x -> SAM_V1_6_Read_Group_Platform

Show SAM_V1_6_Read_Group_Platform

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Platform -> ShowS

show :: SAM_V1_6_Read_Group_Platform -> String

showList :: [SAM_V1_6_Read_Group_Platform] -> ShowS

Eq SAM_V1_6_Read_Group_Platform

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Platform -> SAM_V1_6_Read_Group_Platform -> Bool

(/=) :: SAM_V1_6_Read_Group_Platform -> SAM_V1_6_Read_Group_Platform -> Bool

type Rep SAM_V1_6_Read_Group_Platform

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Platform = D1 ('MetaData "SAM_V1_6_Read_Group_Platform" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Platform_Model

PM tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform_Model

Fields

• sam_v1_6_read_group_platform_model_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Platform_Model

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Platform_Model :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Platform_Model -> Rep SAM_V1_6_Read_Group_Platform_Model x

to :: Rep SAM_V1_6_Read_Group_Platform_Model x -> SAM_V1_6_Read_Group_Platform_Model

Show SAM_V1_6_Read_Group_Platform_Model

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Platform_Model -> ShowS

show :: SAM_V1_6_Read_Group_Platform_Model -> String

showList :: [SAM_V1_6_Read_Group_Platform_Model] -> ShowS

Eq SAM_V1_6_Read_Group_Platform_Model

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Platform_Model -> SAM_V1_6_Read_Group_Platform_Model -> Bool

(/=) :: SAM_V1_6_Read_Group_Platform_Model -> SAM_V1_6_Read_Group_Platform_Model -> Bool

type Rep SAM_V1_6_Read_Group_Platform_Model

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Platform_Model = D1 ('MetaData "SAM_V1_6_Read_Group_Platform_Model" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform_Model" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_model_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Platform_Unit

PU tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Platform_Unit

Fields

• sam_v1_6_read_group_platform_unit_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Platform_Unit

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Platform_Unit :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Platform_Unit -> Rep SAM_V1_6_Read_Group_Platform_Unit x

to :: Rep SAM_V1_6_Read_Group_Platform_Unit x -> SAM_V1_6_Read_Group_Platform_Unit

Show SAM_V1_6_Read_Group_Platform_Unit

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Platform_Unit -> ShowS

show :: SAM_V1_6_Read_Group_Platform_Unit -> String

showList :: [SAM_V1_6_Read_Group_Platform_Unit] -> ShowS

Eq SAM_V1_6_Read_Group_Platform_Unit

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Platform_Unit -> SAM_V1_6_Read_Group_Platform_Unit -> Bool

(/=) :: SAM_V1_6_Read_Group_Platform_Unit -> SAM_V1_6_Read_Group_Platform_Unit -> Bool

type Rep SAM_V1_6_Read_Group_Platform_Unit

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Platform_Unit = D1 ('MetaData "SAM_V1_6_Read_Group_Platform_Unit" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Platform_Unit" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_platform_unit_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))

newtype SAM_V1_6_Read_Group_Sample

SM tag for SAM_V1_6_Read_Group.

Constructors

SAM_V1_6_Read_Group_Sample

Fields

• sam_v1_6_read_group_sample_value :: ByteString

Instances

Generic SAM_V1_6_Read_Group_Sample

Defined in Data.SAM.Version1_6.Header.RG

Associated Types

type Rep SAM_V1_6_Read_Group_Sample :: Type -> Type

Methods

from :: SAM_V1_6_Read_Group_Sample -> Rep SAM_V1_6_Read_Group_Sample x

to :: Rep SAM_V1_6_Read_Group_Sample x -> SAM_V1_6_Read_Group_Sample

Show SAM_V1_6_Read_Group_Sample

Defined in Data.SAM.Version1_6.Header.RG

Methods

showsPrec :: Int -> SAM_V1_6_Read_Group_Sample -> ShowS

show :: SAM_V1_6_Read_Group_Sample -> String

showList :: [SAM_V1_6_Read_Group_Sample] -> ShowS

Eq SAM_V1_6_Read_Group_Sample

Defined in Data.SAM.Version1_6.Header.RG

Methods

(==) :: SAM_V1_6_Read_Group_Sample -> SAM_V1_6_Read_Group_Sample -> Bool

(/=) :: SAM_V1_6_Read_Group_Sample -> SAM_V1_6_Read_Group_Sample -> Bool

type Rep SAM_V1_6_Read_Group_Sample

Defined in Data.SAM.Version1_6.Header.RG

type Rep SAM_V1_6_Read_Group_Sample = D1 ('MetaData "SAM_V1_6_Read_Group_Sample" "Data.SAM.Version1_6.Header.RG" "hs-samtools-0.9.0.0-inplace" 'True) (C1 ('MetaCons "SAM_V1_6_Read_Group_Sample" 'PrefixI 'True) (S1 ('MetaSel ('Just "sam_v1_6_read_group_sample_value") 'NoSourceUnpackedness 'NoSourceStrictness 'DecidedLazy) (Rec0 ByteString)))