Alignment

Documentation

cDist :: Ptr Word8 -> CSize -> Ptr Word8 -> CSize -> IO CInt

editDistance :: ByteString -> ByteString -> Int

data KSWR

Constructors

KSWR

Fields

• score :: CInt
• targend :: CInt
• querend :: CInt
• score2 :: CInt
• targend2 :: CInt
• targbeg :: CInt
• querbeg :: CInt

Instances

Eq KSWR

Methods

(==) :: KSWR -> KSWR -> Bool

(/=) :: KSWR -> KSWR -> Bool

Read KSWR

Methods

readsPrec :: Int -> ReadS KSWR

readList :: ReadS [KSWR]

readPrec :: ReadPrec KSWR

readListPrec :: ReadPrec [KSWR]

Show KSWR

Methods

showsPrec :: Int -> KSWR -> ShowS

show :: KSWR -> String

showList :: [KSWR] -> ShowS

Storable KSWR

Methods

sizeOf :: KSWR -> Int

alignment :: KSWR -> Int

peekElemOff :: Ptr KSWR -> Int -> IO KSWR

pokeElemOff :: Ptr KSWR -> Int -> KSWR -> IO ()

peekByteOff :: Ptr b -> Int -> IO KSWR

pokeByteOff :: Ptr b -> Int -> KSWR -> IO ()

peek :: Ptr KSWR -> IO KSWR

poke :: Ptr KSWR -> KSWR -> IO ()

cLocalAlign :: CInt -> Ptr Word8 -> CInt -> Ptr Word8 -> CInt -> CInt -> CInt -> Ptr KSWR -> IO ()

bs_align :: ByteString -> ByteString -> KSWR

cCigarAlign :: CInt -> Ptr Word8 -> CInt -> Ptr Word8 -> CInt -> CInt -> CInt -> Ptr CInt -> Ptr (Ptr CInt) -> IO CInt

free_finalizer :: FunPtr (Ptr a -> IO ())

cigar_align :: ByteString -> ByteString -> (Int, [(Char, Int)])