seqloc-0.5: Handle sequence locations for bioinformatics
Data type for a more general sequence location consiting of
disjoint ranges of positions on a sequence.
Throughout, sequence position refers to a Pos which includes a
strand, as opposed to an offset, which refers to a Offset with
data SpliceLoc Source
General (disjoint) sequence region consisting of a concatenated
set of one or more contiguous regions.
fromContigs :: [ContigLoc] -> Maybe SpliceLocSource
locOutof :: Location l => SpliceLoc -> l -> Maybe SpliceLocSource
locInto :: Location l => SpliceLoc -> l -> Maybe SpliceLocSource
mergeContigs :: [ContigLoc] -> [ContigLoc]Source
mergeAdjContigs :: ContigLoc -> ContigLoc -> Maybe ContigLocSource
Produced by Haddock version 2.9.4