SequenceFormats.Genomic

Documentation

class Genomic a where

Minimal complete definition

genomicPosition

Methods

genomicPosition :: a -> (Chrom, Int)

genomicChrom :: a -> Chrom

genomicBase :: a -> Int

Instances

Genomic PileupRow

Defined in SequenceFormats.Genomic

Methods

genomicPosition :: PileupRow -> (Chrom, Int)

genomicChrom :: PileupRow -> Chrom

genomicBase :: PileupRow -> Int

Genomic FreqSumEntry

Defined in SequenceFormats.Genomic

Methods

genomicPosition :: FreqSumEntry -> (Chrom, Int)

genomicChrom :: FreqSumEntry -> Chrom

genomicBase :: FreqSumEntry -> Int

Genomic EigenstratSnpEntry

Defined in SequenceFormats.Genomic

Methods

genomicPosition :: EigenstratSnpEntry -> (Chrom, Int)

genomicChrom :: EigenstratSnpEntry -> Chrom

genomicBase :: EigenstratSnpEntry -> Int

Genomic VCFentry

Defined in SequenceFormats.Genomic

Methods

genomicPosition :: VCFentry -> (Chrom, Int)

genomicChrom :: VCFentry -> Chrom

genomicBase :: VCFentry -> Int

chromFilter :: Genomic e => [Chrom] -> e -> Bool

genomicFilterThroughBed :: (Monad m, Genomic e) => Producer BedEntry m () -> Producer e m () -> Producer e m ()