Copyright	(c) Dominik Schrempf 2018
License	GPL-3.0-or-later
Maintainer	dominik.schrempf@gmail.com
Stability	unstable
Portability	portable
Safe Haskell	None
Language	Haskell2010

SLynx.SubSample.Options

Description

Creation date: Sun Oct 7 17:29:45 2018.

Synopsis

data SubSampleArguments = SubSampleArguments {
- ssAlphabet :: Alphabet
- ssInFile :: FilePath
- ssNSites :: Int
- ssNAlignments :: Int
- ssMbSeed :: Seed
}
subSampleArguments :: Parser SubSampleArguments
getOutSuffixes :: Int -> String -> [String]

Documentation

data SubSampleArguments Source #

Data structure holding the Command line arguments.

Constructors

SubSampleArguments
Fields ssAlphabet :: Alphabet ssInFile :: FilePath ssNSites :: Int ssNAlignments :: Int ssMbSeed :: Seed

Instances

Eq SubSampleArguments Source #
Instance details Defined in SLynx.SubSample.Options Methods (==) :: SubSampleArguments -> SubSampleArguments -> Bool # (/=) :: SubSampleArguments -> SubSampleArguments -> Bool #
Show SubSampleArguments Source #
Instance details Defined in SLynx.SubSample.Options Methods showsPrec :: Int -> SubSampleArguments -> ShowS # show :: SubSampleArguments -> String # showList :: [SubSampleArguments] -> ShowS #
Generic SubSampleArguments Source #
Instance details Defined in SLynx.SubSample.Options Associated Types type Rep SubSampleArguments :: Type -> Type # Methods from :: SubSampleArguments -> Rep SubSampleArguments x # to :: Rep SubSampleArguments x -> SubSampleArguments #
ToJSON SubSampleArguments Source #
Instance details Defined in SLynx.SubSample.Options Methods toJSON :: SubSampleArguments -> Value # toEncoding :: SubSampleArguments -> Encoding # toJSONList :: [SubSampleArguments] -> Value # toEncodingList :: [SubSampleArguments] -> Encoding #
FromJSON SubSampleArguments Source #
Instance details Defined in SLynx.SubSample.Options Methods parseJSON :: Value -> Parser SubSampleArguments # parseJSONList :: Value -> Parser [SubSampleArguments] #
Reproducible SubSampleArguments Source #
Instance details Defined in SLynx.SubSample.Options Methods inFiles :: SubSampleArguments -> [FilePath] # outSuffixes :: SubSampleArguments -> [String] # getSeed :: SubSampleArguments -> Maybe Seed # setSeed :: SubSampleArguments -> Vector Word32 -> SubSampleArguments # parser :: Parser SubSampleArguments # cmdName :: String # cmdDsc :: [String] # cmdFtr :: [String] #
type Rep SubSampleArguments Source #
Instance details Defined in SLynx.SubSample.Options type Rep SubSampleArguments = D1 (MetaData "SubSampleArguments" "SLynx.SubSample.Options" "slynx-0.4.0-J2c9FdWj9XMF4YSARfQCCD" False) (C1 (MetaCons "SubSampleArguments" PrefixI True) ((S1 (MetaSel (Just "ssAlphabet") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Alphabet) :: S1 (MetaSel (Just "ssInFile") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 FilePath)) :: (S1 (MetaSel (Just "ssNSites") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Int) :: (S1 (MetaSel (Just "ssNAlignments") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Int) :: S1 (MetaSel (Just "ssMbSeed") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 Seed)))))

subSampleArguments :: Parser SubSampleArguments Source #

Sub command parser.

getOutSuffixes :: Int -> String -> [String] Source #

Get a given number of output file suffixes.

getOutSuffixes 11 "fasta"

Will result in .00.fasta up to .10.fasta.