Contents
Index
tlynx-0.3.4: Handle phylogenetic trees
Index
argsBipartitions
TLynx.Compare.Options
argsDistance
TLynx.Distance.Options
argsInFile
TLynx.Examine.Options
argsInFiles
1 (Function)
TLynx.Distance.Options
2 (Function)
TLynx.Compare.Options
argsIntersect
1 (Function)
TLynx.Distance.Options
2 (Function)
TLynx.Compare.Options
argsMasterTreeFile
TLynx.Distance.Options
argsNewickFormat
1 (Function)
TLynx.Examine.Options
2 (Function)
TLynx.Distance.Options
3 (Function)
TLynx.Compare.Options
argsNLeaves
TLynx.Simulate.Options
argsNormalize
1 (Function)
TLynx.Distance.Options
2 (Function)
TLynx.Compare.Options
argsNTrees
TLynx.Simulate.Options
argsProcess
TLynx.Simulate.Options
argsSeed
1 (Function)
TLynx.Shuffle.Options
2 (Function)
TLynx.Simulate.Options
argsSubSample
TLynx.Simulate.Options
argsSummaryStatistics
TLynx.Distance.Options
argsSumStat
TLynx.Simulate.Options
Arguments
1 (Data Constructor)
TLynx.Options
2 (Type/Class)
TLynx.Options
bdHeight
TLynx.Simulate.Options
bdLambda
TLynx.Simulate.Options
bdMu
TLynx.Simulate.Options
bdRho
TLynx.Simulate.Options
BirthDeath
TLynx.Simulate.Options
BranchScore
TLynx.Distance.Options
Coalescent
TLynx.Simulate.Options
CommandArguments
TLynx.Options
Compare
TLynx.Options
CompareArguments
1 (Type/Class)
TLynx.Compare.Options
2 (Data Constructor)
TLynx.Compare.Options
compareArguments
TLynx.Compare.Options
compareCmd
TLynx.Compare.Compare
Connect
TLynx.Options
ConnectArguments
1 (Type/Class)
TLynx.Connect.Options
2 (Data Constructor)
TLynx.Connect.Options
connectArguments
TLynx.Connect.Options
connectCmd
TLynx.Connect.Connect
constraints
TLynx.Connect.Options
Distance
TLynx.Options
distance
TLynx.Distance.Distance
DistanceArguments
1 (Type/Class)
TLynx.Distance.Options
2 (Data Constructor)
TLynx.Distance.Options
distanceArguments
TLynx.Distance.Options
distanceFooter
TLynx.Distance.Options
DistanceMeasure
TLynx.Distance.Options
Examine
TLynx.Options
examine
TLynx.Examine.Examine
ExamineArguments
1 (Type/Class)
TLynx.Examine.Options
2 (Data Constructor)
TLynx.Examine.Options
examineArguments
TLynx.Examine.Options
global
TLynx.Options
Height
TLynx.Simulate.Options
IncompatibleSplit
TLynx.Distance.Options
inFile
TLynx.Shuffle.Options
inFileA
TLynx.Connect.Options
inFileB
TLynx.Connect.Options
local
TLynx.Options
Mrca
TLynx.Simulate.Options
NewickFormat
TLynx.Parsers
newickFormat
TLynx.Parsers
newickHelp
TLynx.Parsers
nReplicates
TLynx.Shuffle.Options
nSubSamples
TLynx.Simulate.Simulate
nwFormat
1 (Function)
TLynx.Connect.Options
2 (Function)
TLynx.Shuffle.Options
Origin
TLynx.Simulate.Options
parseArguments
TLynx.Options
Process
TLynx.Simulate.Options
reportSimulateArguments
TLynx.Simulate.Options
rTLynx
TLynx.TLynx
Shuffle
TLynx.Options
ShuffleArguments
1 (Type/Class)
TLynx.Shuffle.Options
2 (Data Constructor)
TLynx.Shuffle.Options
shuffleArguments
TLynx.Shuffle.Options
shuffleCmd
TLynx.Shuffle.Shuffle
Simulate
TLynx.Options
simulate
TLynx.Simulate.Simulate
SimulateArguments
1 (Type/Class)
TLynx.Simulate.Options
2 (Data Constructor)
TLynx.Simulate.Options
simulateArguments
TLynx.Simulate.Options
Symmetric
TLynx.Distance.Options
tlynx
TLynx.TLynx