tlynx-0.5.1.0: Handle phylogenetic trees

Index

argsBipartitionsTLynx.Compare.Options
argsDistanceTLynx.Distance.Options
argsInFileTLynx.Examine.Options
argsInFiles 
1 (Function)TLynx.Distance.Options
2 (Function)TLynx.Compare.Options
argsIntersect 
1 (Function)TLynx.Distance.Options
2 (Function)TLynx.Compare.Options
argsMasterTreeFileTLynx.Distance.Options
argsNewickFormat 
1 (Function)TLynx.Examine.Options
2 (Function)TLynx.Distance.Options
3 (Function)TLynx.Compare.Options
argsNLeavesTLynx.Simulate.Options
argsNormalize 
1 (Function)TLynx.Distance.Options
2 (Function)TLynx.Compare.Options
argsNTreesTLynx.Simulate.Options
argsProcessTLynx.Simulate.Options
argsSeed 
1 (Function)TLynx.Shuffle.Options
2 (Function)TLynx.Simulate.Options
argsSubSampleTLynx.Simulate.Options
argsSummaryStatisticsTLynx.Distance.Options
argsSumStatTLynx.Simulate.Options
Arguments 
1 (Data Constructor)TLynx.Options
2 (Type/Class)TLynx.Options
bdHeightTLynx.Simulate.Options
bdLambdaTLynx.Simulate.Options
bdMuTLynx.Simulate.Options
bdRhoTLynx.Simulate.Options
BirthDeathTLynx.Simulate.Options
BranchScoreTLynx.Distance.Options
CoalescentTLynx.Simulate.Options
CommandArgumentsTLynx.Options
CompareTLynx.Options
CompareArguments 
1 (Type/Class)TLynx.Compare.Options
2 (Data Constructor)TLynx.Compare.Options
compareArgumentsTLynx.Compare.Options
compareCmdTLynx.Compare.Compare
ConnectTLynx.Options
ConnectArguments 
1 (Type/Class)TLynx.Connect.Options
2 (Data Constructor)TLynx.Connect.Options
connectArgumentsTLynx.Connect.Options
connectCmdTLynx.Connect.Connect
constraintsTLynx.Connect.Options
DistanceTLynx.Options
distanceTLynx.Distance.Distance
DistanceArguments 
1 (Type/Class)TLynx.Distance.Options
2 (Data Constructor)TLynx.Distance.Options
distanceArgumentsTLynx.Distance.Options
distanceFooterTLynx.Distance.Options
DistanceMeasureTLynx.Distance.Options
ExamineTLynx.Options
examineTLynx.Examine.Examine
ExamineArguments 
1 (Type/Class)TLynx.Examine.Options
2 (Data Constructor)TLynx.Examine.Options
examineArgumentsTLynx.Examine.Options
globalTLynx.Options
IncompatibleSplitTLynx.Distance.Options
inFileTLynx.Shuffle.Options
inFileATLynx.Connect.Options
inFileBTLynx.Connect.Options
localTLynx.Options
NewickFormatTLynx.Parsers
newickFormatTLynx.Parsers
newickHelpTLynx.Parsers
nReplicatesTLynx.Shuffle.Options
nwFormat 
1 (Function)TLynx.Connect.Options
2 (Function)TLynx.Shuffle.Options
parseArgumentsTLynx.Options
parseTreeTLynx.Parsers
parseTreesTLynx.Parsers
ProcessTLynx.Simulate.Options
reportSimulateArgumentsTLynx.Simulate.Options
rTLynxTLynx.TLynx
ShuffleTLynx.Options
ShuffleArguments 
1 (Type/Class)TLynx.Shuffle.Options
2 (Data Constructor)TLynx.Shuffle.Options
shuffleArgumentsTLynx.Shuffle.Options
shuffleCmdTLynx.Shuffle.Shuffle
SimulateTLynx.Options
simulateTLynx.Simulate.Simulate
SimulateArguments 
1 (Type/Class)TLynx.Simulate.Options
2 (Data Constructor)TLynx.Simulate.Options
simulateArgumentsTLynx.Simulate.Options
SymmetricTLynx.Distance.Options
tlynxTLynx.TLynx