Contents
Index
AlignmentAlgorithms-0.1.0.0: Collection of alignment algorithms
Index
afdelin
DP.Tree.Align.Global.Affine2
afindel
DP.Tree.Align.Global.Affine2
align
1 (Function)
DP.Tree.Edit.Global.Linear2
2 (Function)
DP.Tree.Align.Global.Affine2
3 (Function)
DP.Seq.Align.SemiGlobal.Infix2
4 (Function)
DP.Seq.Align.Global.Linear2
5 (Function)
DP.Seq.Align.Global.Affine2
backtrack
DP.Seq.Align.Global.Linear2
backtrackFun
DP.Seq.Align.Global.Linear2
contL
DP.Seq.Align.SemiGlobal.Infix2
contU
1 (Function)
DP.Seq.Align.SemiGlobal.Infix2
2 (Function)
DP.Seq.Align.Global.Affine2
delin
1 (Function)
DP.Tree.Edit.Global.Linear2
2 (Function)
DP.Tree.Align.Global.Affine2
3 (Function)
DP.Seq.Align.Global.Linear2
done
1 (Function)
DP.Tree.Edit.Global.Linear2
2 (Function)
DP.Tree.Align.Global.Affine2
3 (Function)
DP.Seq.Align.SemiGlobal.Infix2
4 (Function)
DP.Seq.Align.Global.Linear2
5 (Function)
DP.Seq.Align.Global.Affine2
6 (Function)
DP.HMM.States2
fgalign
DP.Tree.Align.Global.Affine2
fgdelin
DP.Tree.Align.Global.Affine2
fgindel
DP.Tree.Align.Global.Affine2
fpalign
DP.Tree.Align.Global.Affine2
fpdelin
DP.Tree.Align.Global.Affine2
fpindel
DP.Tree.Align.Global.Affine2
frSUD
DP.Seq.Align.SemiGlobal.Infix2
frSUI
DP.Seq.Align.SemiGlobal.Infix2
frSUM
DP.Seq.Align.SemiGlobal.Infix2
frUSD
DP.Seq.Align.SemiGlobal.Infix2
frUSI
DP.Seq.Align.SemiGlobal.Infix2
frUSM
DP.Seq.Align.SemiGlobal.Infix2
gAlign
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
gDelin
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
gDone
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
gfalign
DP.Tree.Align.Global.Affine2
gfdelin
DP.Tree.Align.Global.Affine2
gFgap
DP.Tree.Align.Global.AffineSmall2
gFinalDone
DP.Tree.Align.Global.AffineSmall2
gfindel
DP.Tree.Align.Global.Affine2
gGlobal
1 (Function)
DP.Tree.Edit.Global.Linear2
2 (Function)
DP.Tree.Align.Global.Linear2
3 (Function)
DP.Tree.Align.Global.AffineSmall2
4 (Function)
DP.Tree.Align.Global.Affine2
5 (Function)
DP.Seq.Align.Global.Linear2
gGotoh
DP.Seq.Align.Global.Affine2
gH
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
gHMM
DP.HMM.States2
gIndel
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
gInfix
DP.Seq.Align.SemiGlobal.Infix2
gIter
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
gLabolg
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
gpalign
DP.Tree.Align.Global.Affine2
gpdelin
DP.Tree.Align.Global.Affine2
gPgap
DP.Tree.Align.Global.AffineSmall2
gpindel
DP.Tree.Align.Global.Affine2
gSgap
DP.Tree.Align.Global.AffineSmall2
gSiter
DP.Tree.Align.Global.AffineSmall2
h
1 (Function)
DP.Tree.Edit.Global.Linear2
2 (Function)
DP.Tree.Align.Global.Affine2
3 (Function)
DP.Seq.Align.SemiGlobal.Infix2
4 (Function)
DP.Seq.Align.Global.Linear2
5 (Function)
DP.Seq.Align.Global.Affine2
6 (Function)
DP.HMM.States2
indel
1 (Function)
DP.Tree.Edit.Global.Linear2
2 (Function)
DP.Tree.Align.Global.Affine2
3 (Function)
DP.Seq.Align.Global.Linear2
iter
1 (Function)
DP.Tree.Edit.Global.Linear2
2 (Function)
DP.Tree.Align.Global.Affine2
lAlign
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
lDelin
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
lDone
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
lFgap
DP.Tree.Align.Global.AffineSmall2
lFinalDone
DP.Tree.Align.Global.AffineSmall2
lH
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
lIndel
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
lIter
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
lPgap
DP.Tree.Align.Global.AffineSmall2
lSgap
DP.Tree.Align.Global.AffineSmall2
lSiter
DP.Tree.Align.Global.AffineSmall2
mstay
DP.HMM.States2
mtop
DP.HMM.States2
openL
1 (Function)
DP.Seq.Align.SemiGlobal.Infix2
2 (Function)
DP.Seq.Align.Global.Affine2
openU
1 (Function)
DP.Seq.Align.SemiGlobal.Infix2
2 (Function)
DP.Seq.Align.Global.Affine2
pfalign
DP.Tree.Align.Global.Affine2
pfdelin
DP.Tree.Align.Global.Affine2
pfindel
DP.Tree.Align.Global.Affine2
pgalign
DP.Tree.Align.Global.Affine2
pgdelin
DP.Tree.Align.Global.Affine2
pgindel
DP.Tree.Align.Global.Affine2
prePU
DP.Seq.Align.SemiGlobal.Infix2
preUP
DP.Seq.Align.SemiGlobal.Infix2
pstay
DP.HMM.States2
ptom
DP.HMM.States2
resig
1 (Function)
DP.Tree.Align.Global.Linear2
2 (Function)
DP.Tree.Align.Global.AffineSmall2
runBacktrack
DP.Seq.Align.Global.Linear2
SigGlobal
1 (Type/Class)
DP.Tree.Edit.Global.Linear2
2 (Data Constructor)
DP.Tree.Edit.Global.Linear2
3 (Type/Class)
DP.Tree.Align.Global.Linear2
4 (Data Constructor)
DP.Tree.Align.Global.Linear2
5 (Type/Class)
DP.Tree.Align.Global.AffineSmall2
6 (Data Constructor)
DP.Tree.Align.Global.AffineSmall2
7 (Type/Class)
DP.Tree.Align.Global.Affine2
8 (Data Constructor)
DP.Tree.Align.Global.Affine2
9 (Type/Class)
DP.Seq.Align.Global.Linear2
10 (Data Constructor)
DP.Seq.Align.Global.Linear2
SigGotoh
1 (Type/Class)
DP.Seq.Align.Global.Affine2
2 (Data Constructor)
DP.Seq.Align.Global.Affine2
SigHMM
1 (Type/Class)
DP.HMM.States2
2 (Data Constructor)
DP.HMM.States2
SigInfix
1 (Type/Class)
DP.Seq.Align.SemiGlobal.Infix2
2 (Data Constructor)
DP.Seq.Align.SemiGlobal.Infix2
SigLabolg
1 (Type/Class)
DP.Tree.Align.Global.Linear2
2 (Data Constructor)
DP.Tree.Align.Global.Linear2
3 (Type/Class)
DP.Tree.Align.Global.AffineSmall2
4 (Data Constructor)
DP.Tree.Align.Global.AffineSmall2
start
1 (Function)
DP.Seq.Align.SemiGlobal.Infix2
2 (Function)
DP.Seq.Align.Global.Affine2
sufSU
DP.Seq.Align.SemiGlobal.Infix2
sufUS
DP.Seq.Align.SemiGlobal.Infix2
toPUD
DP.Seq.Align.SemiGlobal.Infix2
toPUI
DP.Seq.Align.SemiGlobal.Infix2
toPUM
DP.Seq.Align.SemiGlobal.Infix2
toUPD
DP.Seq.Align.SemiGlobal.Infix2
toUPI
DP.Seq.Align.SemiGlobal.Infix2
toUPM
DP.Seq.Align.SemiGlobal.Infix2