Bio.HMMCompareResult

Parse HMMCompare output

Documentation

data HMMCompareResult

Datastructure for result strings of comparisons between covariance models by HMMCompare

Instances

Show HMMCompareResult

Methods

showsPrec :: Int -> HMMCompareResult -> ShowS

show :: HMMCompareResult -> String

showList :: [HMMCompareResult] -> ShowS

parseHMMCompareResult :: String -> Either ParseError [HMMCompareResult]

parse HMMCompareResult model from input string

readHMMCompareResult :: String -> IO (Either ParseError [HMMCompareResult])

parse HMMCompareResult from input filePath

model1Name :: HMMCompareResult -> String

model2Name :: HMMCompareResult -> String

linkscore1 :: HMMCompareResult -> Double

linkscore2 :: HMMCompareResult -> Double

linksequence :: HMMCompareResult -> String

model1matchednodes :: HMMCompareResult -> [Int]

model2matchednodes :: HMMCompareResult -> [Int]

getHMMCompareResults :: FilePath -> IO [Either ParseError HMMCompareResult]

Parser for HMMCompare result strings

getModelsNames :: [HMMCompareResult] -> [String]

getModelNames :: HMMCompareResult -> [String]