Bio.HMMCompareResult

Parse HMMCompare output

Documentation

data HMMCompareResult

Datastructure for result strings of comparisons between covariance models by HMMCompare

Constructors

HMMCompareResult

Fields

• model1Name :: String
• model2Name :: String
• linkscore1 :: Double
• linkscore2 :: Double
• linksequence :: String
• model1matchednodes :: [Int]
• model2matchednodes :: [Int]

Instances

Show HMMCompareResult

Methods

showsPrec :: Int -> HMMCompareResult -> ShowS

show :: HMMCompareResult -> String

showList :: [HMMCompareResult] -> ShowS

parseHMMCompareResult :: String -> Either ParseError [HMMCompareResult]

parse HMMCompareResult model from input string

readHMMCompareResult :: String -> IO (Either ParseError [HMMCompareResult])

parse HMMCompareResult from input filePath

getHMMCompareResults :: FilePath -> IO [Either ParseError HMMCompareResult]

Parser for HMMCompare result strings

getModelsNames :: [HMMCompareResult] -> [String]

getModelNames :: HMMCompareResult -> [String]