| Safe Haskell | None |
|---|---|
| Language | Haskell98 |
Bio.HMMData
Description
Datastructures for nHMMER hidden Markov models, representing RNA families For more information on nHMMER consult http://eddylab.org/infernal/
- data HMMER3 = HMMER3 {
- version :: String
- name :: String
- acc :: String
- desc :: Maybe String
- leng :: Int
- maxl :: Maybe Int
- alpha :: String
- rf :: Bool
- mm :: Bool
- cons :: Bool
- cs :: Bool
- map :: Bool
- date :: String
- com :: Maybe String
- nseq :: Int
- effn :: Double
- cksum :: Int
- ga :: Maybe (Double, Double)
- tc :: Maybe (Double, Double)
- nc :: Maybe (Double, Double)
- bm :: Maybe String
- sm :: Maybe String
- localmsv :: (Double, Double)
- localviterbi :: (Double, Double)
- localforward :: (Double, Double)
- hmm :: String
- compo :: HMMER3Composite
- begin :: HMMER3Node
- nodes :: Vector HMMER3Node
- data HMMER3Node = HMMER3Node {}
- data HMMER3Composite = HMMER3Composite {}
Documentation
Data structure for HMMER
Constructors
| HMMER3 | |
Fields
| |
data HMMER3Node Source #
Data structure for the HMMER3 node
Constructors
| HMMER3Node | |
Fields
| |
Instances
data HMMER3Composite Source #
Data structure for the HMMER3 overall probabilities
Constructors
| HMMER3Composite | |
Fields | |
Instances