Biobase.Structure

Documentation

data Complex

A complex of one or more primary and secondary structures

Constructors

Complex

Fields

comments :: String

structures :: [(Primary, Secondary)]

Instances

Show Complex

data Secondary

A secondary structure. It is explicit that we store the length of the sequence. (length n, last index (n-1) problem)

Constructors

Secondary

Fields

len :: Int

pairings :: [(Int, Int)]

Instances

Show Secondary

data SSTree a

secondary structure representation using an explicit tree, SSExt encodes the length of the underlying sequence. Each node can contain additional information under a.

Constructors

SSTree Int Int a [SSTree a]

SSExt Int a [SSTree a]

Instances

Eq a => Eq (SSTree a)

Read a => Read (SSTree a)

Show a => Show (SSTree a)

toSSTree :: Secondary -> SSTree ()

generate an SSTree from a secondary structure