BiobaseBlast-0.0.0.1: BLAST-related tools

Safe Haskell	None

Biobase.SubstMatrix

Synopsis

Documentation

type SubstMatrix = Array (Char, Char) Int Source

Substitution table for one amino acid with another

type Nuc3SubstMatrix = Array (Nuc, Nuc, Nuc, Char) Int Source

Substitution from three DNA nucleotides to an amino acid.

type Nuc2SubstMatrix = Array (Nuc, Nuc, Char) Int Source

type Nuc1SubstMatrix = Array (Nuc, Char) Int Source

mkNuc3SubstMatrix :: SubstMatrix -> Nuc3SubstMatrix Source

mkNuc2SubstMatrix :: (Int -> Int -> Int) -> (Int -> Int) -> SubstMatrix -> Nuc2SubstMatrix Source

mkNuc1SubstMatrix :: (Int -> Int -> Int) -> (Int -> Int) -> SubstMatrix -> Nuc1SubstMatrix Source