Biobase.GFF3.Types

Encoding of GFF3

Documentation

data GFF3

Datastructure for GFF3 http://gmod.org/wiki/GFF3

Constructors

GFF3

Fields

• gff3Entries :: !(Vector GFF3Entry)
• gff3Sequence :: !ByteString

Instances

Eq GFF3

Defined in Biobase.GFF3.Types

Methods

(==) :: GFF3 -> GFF3 -> Bool

(/=) :: GFF3 -> GFF3 -> Bool

Show GFF3

Defined in Biobase.GFF3.Export

Methods

showsPrec :: Int -> GFF3 -> ShowS

show :: GFF3 -> String

showList :: [GFF3] -> ShowS

data GFF3Entry

Datastructure for data lines of GFF3 http://gmod.org/wiki/GFF3

Constructors

GFF3Entry

Fields

• gff3Seqid :: !ByteString
• gff3Source :: !ByteString
• gff3Type :: !ByteString
• gff3Start :: Int
• gff3End :: Int
• gff3Score :: !ByteString
• gff3Strand :: Char
• gff3Phase :: ByteString
• gff3Attributes :: !(Vector ByteString)

Instances

Eq GFF3Entry

Defined in Biobase.GFF3.Types

Methods

(==) :: GFF3Entry -> GFF3Entry -> Bool

(/=) :: GFF3Entry -> GFF3Entry -> Bool

Show GFF3Entry

Defined in Biobase.GFF3.Export

Methods

showsPrec :: Int -> GFF3Entry -> ShowS

show :: GFF3Entry -> String

showList :: [GFF3Entry] -> ShowS