Biobase.Fasta.Import

Documentation

parseFastaWindows :: Monad m => Int -> Conduit ByteString m FastaWindow

Parse from ByteString into FastaWindows with a past.

renderFastaWindows :: Monad m => Int -> Conduit FastaWindow m ByteString

Render from FastaWindows into ByteStrings.

data Event

An event is either a FASTA header or a part of a FASTA data stream, chunked into user-defineable pieces. If there is no more input, we are Done. But we are only Done if there was some input in the first place!

Constructors

Header !ByteString !ByteString

Data !ByteString

Done

Instances

Eq Event

Show Event

isHeader :: Event -> Bool

parseEvents :: Monad m => Int -> GInfConduit ByteString m Event

Parse from ByteString into Events.

renderEvents :: Monad m => Int -> Conduit Event m ByteString

Render from Events into ByteStrings. cols is the number of characters after which a newline is introduced into the stream. Such newlines are introduced only into Data events.

printHeader :: Event -> ByteString

test :: IO ()