| AC2CM | Biobase.Infernal.CM |
| ACAC2RfamFasta | Biobase.Infernal.RfamFasta |
| accession | Biobase.Infernal.CM |
| aliAnnotation | Biobase.Infernal.VerboseHit.Internal |
| aliCM | Biobase.Infernal.VerboseHit.Internal |
| Align | |
| 1 (Type/Class) | Biobase.Infernal.Align |
| 2 (Data Constructor) | Biobase.Infernal.Align |
| AliGo | |
| 1 (Type/Class) | Biobase.Infernal.VerboseHit.Internal |
| 2 (Data Constructor) | Biobase.Infernal.VerboseHit.Internal |
| aliScaffold | Biobase.Infernal.VerboseHit.Internal |
| aliStrand | Biobase.Infernal.VerboseHit.Internal |
| avgProbability | Biobase.Infernal.Align |
| begins | Biobase.Infernal.CM |
| BitScore | |
| 1 (Type/Class) | Biobase.Infernal.Types |
| 2 (Data Constructor) | Biobase.Infernal.Types |
| bitScore | Biobase.Infernal.Hit |
| cAccession | Biobase.Infernal.Clan, Biobase.Infernal |
| cFromFile | Biobase.Infernal |
| cIdentifier | Biobase.Infernal.Clan, Biobase.Infernal |
| Clan | |
| 1 (Type/Class) | Biobase.Infernal.Clan, Biobase.Infernal |
| 2 (Data Constructor) | Biobase.Infernal.Clan, Biobase.Infernal |
| ClanAccession | |
| 1 (Type/Class) | Biobase.Infernal.Types |
| 2 (Data Constructor) | Biobase.Infernal.Types |
| ClanIdentification | |
| 1 (Type/Class) | Biobase.Infernal.Types |
| 2 (Data Constructor) | Biobase.Infernal.Types |
| Classification | |
| 1 (Type/Class) | Biobase.Infernal.Types |
| 2 (Data Constructor) | Biobase.Infernal.Types |
| CM | |
| 1 (Type/Class) | Biobase.Infernal.CM |
| 2 (Data Constructor) | Biobase.Infernal.CM |
| cMembers | Biobase.Infernal.Clan, Biobase.Infernal |
| cStrings | Biobase.Infernal.Clan, Biobase.Infernal |
| EmblAccession | |
| 1 (Type/Class) | Biobase.Infernal.Types |
| 2 (Data Constructor) | Biobase.Infernal.Types |
| emission | Biobase.Infernal.CM |
| eneeAlign | Biobase.Infernal.Align.Import |
| eneeByteString | Biobase.Infernal.VerboseHit.Export |
| eneeByteStrings | Biobase.Infernal.VerboseHit.Export |
| eneeCM | Biobase.Infernal.CM.Import |
| eneeRfamFasta | Biobase.Infernal.RfamFasta.Import |
| eneeSpecies | Biobase.Infernal.Taxonomy.Import |
| eneeTabularHit | Biobase.Infernal.TabularHit.Import, Biobase.Infernal |
| eneeVerboseHit | Biobase.Infernal.VerboseHit.Import, Biobase.Infernal |
| evalue | Biobase.Infernal.Hit |
| fastaData | Biobase.Infernal.RfamFasta |
| fromByteString | Biobase.Infernal.Clan.Import |
| fromFile | |
| 1 (Function) | Biobase.Infernal.CM.Import |
| 2 (Function) | Biobase.Infernal.RfamFasta.Import |
| 3 (Function) | Biobase.Infernal.Align.Import |
| 4 (Function) | Biobase.Infernal.Clan.Import |
| 5 (Function) | Biobase.Infernal.Taxonomy.Import |
| 6 (Function) | Biobase.Infernal.VerboseHit.Import |
| 7 (Function) | Biobase.Infernal.TabularHit.Import |
| fromFileZip | |
| 1 (Function) | Biobase.Infernal.CM.Import |
| 2 (Function) | Biobase.Infernal.RfamFasta.Import |
| 3 (Function) | Biobase.Infernal.Align.Import |
| gathering | Biobase.Infernal.CM |
| gcPercent | Biobase.Infernal.Hit |
| Hit | Biobase.Infernal.Hit |
| iACAC2RfamFasta | Biobase.Infernal.RfamFasta.Import |
| ID2CM | Biobase.Infernal.CM |
| IDAC2RfamFasta | Biobase.Infernal.RfamFasta |
| iIDAC2RfamFasta | Biobase.Infernal.RfamFasta.Import |
| iModelAC2ID | Biobase.Infernal.RfamFasta.Import |
| iModelID2AC | Biobase.Infernal.RfamFasta.Import |
| isNodeHeader | Biobase.Infernal.CM.Import |
| iSpeciesMap | Biobase.Infernal.Taxonomy.Import |
| isState | Biobase.Infernal.CM.Import |
| iTaxIdMap | Biobase.Infernal.Taxonomy.Import |
| iterNodes | Biobase.Infernal.CM.Import |
| localBegin | Biobase.Infernal.CM |
| localEnd | Biobase.Infernal.CM |
| mkClan | Biobase.Infernal.Clan.Import |
| mkEmblAccession | Biobase.Infernal.Types |
| mkMap | Biobase.Infernal.CM.Import |
| mkScore | Biobase.Infernal.Align.Import |
| mkSpecies | Biobase.Infernal.Taxonomy.Import |
| model | Biobase.Infernal.Hit |
| ModelAC2ID | Biobase.Infernal.RfamFasta |
| ModelAccession | |
| 1 (Type/Class) | Biobase.Infernal.Types |
| 2 (Data Constructor) | Biobase.Infernal.Types |
| modelAccession | Biobase.Infernal.RfamFasta |
| ModelID2AC | Biobase.Infernal.RfamFasta |
| ModelIdentification | |
| 1 (Type/Class) | Biobase.Infernal.Types |
| 2 (Data Constructor) | Biobase.Infernal.Types |
| modelIdentification | Biobase.Infernal.Align |
| modelIdentifier | Biobase.Infernal.RfamFasta |
| modelStart | Biobase.Infernal.Hit |
| modelStop | Biobase.Infernal.Hit |
| name | Biobase.Infernal.CM |
| newAcc | Biobase.Infernal.VerboseHit.Export |
| Node | |
| 1 (Type/Class) | Biobase.Infernal.CM.Import |
| 2 (Data Constructor) | Biobase.Infernal.CM.Import |
| nodeHeader | Biobase.Infernal.CM.Import |
| nodeIndex | Biobase.Infernal.CM.Import |
| nodes | Biobase.Infernal.CM |
| noiseCutoff | Biobase.Infernal.CM |
| paths | Biobase.Infernal.CM |
| RfamFasta | |
| 1 (Type/Class) | Biobase.Infernal.RfamFasta |
| 2 (Data Constructor) | Biobase.Infernal.RfamFasta |
| Scaffold | |
| 1 (Type/Class) | Biobase.Infernal.Types |
| 2 (Data Constructor) | Biobase.Infernal.Types |
| sequenceAccession | Biobase.Infernal.RfamFasta |
| sequenceName | Biobase.Infernal.Align |
| SequenceScore | |
| 1 (Type/Class) | Biobase.Infernal.Align |
| 2 (Data Constructor) | Biobase.Infernal.Align |
| sequenceScores | Biobase.Infernal.Align |
| shortenName | Biobase.Infernal.Taxonomy |
| showVerboseHit | Biobase.Infernal.VerboseHit.Export |
| sLength | Biobase.Infernal.Align |
| SpeciesAccession | |
| 1 (Type/Class) | Biobase.Infernal.Types |
| 2 (Data Constructor) | Biobase.Infernal.Types |
| speciesAccession | Biobase.Infernal.RfamFasta |
| SpeciesName | |
| 1 (Type/Class) | Biobase.Infernal.Types |
| 2 (Data Constructor) | Biobase.Infernal.Types |
| speciesName | Biobase.Infernal.RfamFasta |
| SpeciesTaxonomy | |
| 1 (Type/Class) | Biobase.Infernal.Taxonomy, Biobase.Infernal |
| 2 (Data Constructor) | Biobase.Infernal.Taxonomy, Biobase.Infernal |
| stAccession | Biobase.Infernal.Taxonomy, Biobase.Infernal |
| stClassification | Biobase.Infernal.Taxonomy, Biobase.Infernal |
| stName | Biobase.Infernal.Taxonomy, Biobase.Infernal |
| stockholmAlignment | Biobase.Infernal.Align |
| Strand | Biobase.Infernal.VerboseHit |
| StrictSeqData | |
| 1 (Type/Class) | Biobase.Infernal.Types |
| 2 (Data Constructor) | Biobase.Infernal.Types |
| structureBitScore | Biobase.Infernal.Align |
| TabularHit | |
| 1 (Type/Class) | Biobase.Infernal.TabularHit, Biobase.Infernal |
| 2 (Data Constructor) | Biobase.Infernal.TabularHit, Biobase.Infernal |
| target | Biobase.Infernal.Hit |
| targetStart | Biobase.Infernal.Hit |
| targetStop | Biobase.Infernal.Hit |
| tFromFile | Biobase.Infernal |
| thBitScore | Biobase.Infernal.TabularHit, Biobase.Infernal |
| thEvalue | Biobase.Infernal.TabularHit, Biobase.Infernal |
| thFromFile | Biobase.Infernal |
| thGCpercent | Biobase.Infernal.TabularHit, Biobase.Infernal |
| thModel | Biobase.Infernal.TabularHit, Biobase.Infernal |
| thModelStart | Biobase.Infernal.TabularHit, Biobase.Infernal |
| thModelStop | Biobase.Infernal.TabularHit, Biobase.Infernal |
| thTarget | Biobase.Infernal.TabularHit, Biobase.Infernal |
| thTargetStart | Biobase.Infernal.TabularHit, Biobase.Infernal |
| thTargetStop | Biobase.Infernal.TabularHit, Biobase.Infernal |
| totalBitScore | Biobase.Infernal.Align |
| transition | Biobase.Infernal.CM |
| trustedCutoff | Biobase.Infernal.CM |
| unBitScore | Biobase.Infernal.Types |
| unClanAccession | Biobase.Infernal.Types |
| unClanIdentification | Biobase.Infernal.Types |
| unClassification | Biobase.Infernal.Types |
| unEmblAccession | Biobase.Infernal.Types |
| unModelAccession | Biobase.Infernal.Types |
| unModelIdentification | Biobase.Infernal.Types |
| unScaffold | Biobase.Infernal.Types |
| unSpeciesAccession | Biobase.Infernal.Types |
| unSpeciesName | Biobase.Infernal.Types |
| unStrictSeqData | Biobase.Infernal.Types |
| VerboseHit | |
| 1 (Type/Class) | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| 2 (Data Constructor) | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhAnnotation | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhBitScore | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhConsensus | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhEneeByteString | Biobase.Infernal |
| vhEneeByteStrings | Biobase.Infernal |
| vhEvalue | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhFromFile | Biobase.Infernal |
| vhGCpercent | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhModel | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhModelStart | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhModelStop | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhPvalue | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhScoring | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhSequence | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhStrand | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhTarget | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhTargetStart | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhTargetStop | Biobase.Infernal.VerboseHit, Biobase.Infernal |
| vhWuss | Biobase.Infernal.VerboseHit, Biobase.Infernal |