Biobase.SElab.Taxonomy.Import

Iteratee-based importer. Provides a simple fromFile function that produces both maps in one pass.

Documentation

parse :: Monad m => Sink ByteString m (Map (Identification Species) Taxonomy, Map (Accession Species) Taxonomy)

mkTaxonomy :: Parser Taxonomy

mapIdTaxonomy :: Monad m => GSink Taxonomy m (Map (Identification Species) Taxonomy)

mapAcTaxonomy :: Monad m => GSink Taxonomy m (Map (Accession Species) Taxonomy)

fromFile :: String -> IO (Map (Identification Species) Taxonomy, Map (Accession Species) Taxonomy)