Biobase.SElab.Taxonomy

Infernal contains a taxonomy database. This is a simple module reflecting said database.

Documentation

data Taxonomy

For each species, we store the name and a classification list from most general (head) to most specific (last). The database comes with the NCBI taxon identifier (taxid).

Constructors

Taxonomy

Fields

_accession :: !(Accession Species)

_name :: !(Identification Species)

_classification :: [Classification]

Instances

Show Taxonomy

name :: Lens Taxonomy Taxonomy (Identification Species) (Identification Species)

classification :: Lens Taxonomy Taxonomy [Classification] [Classification]

accession :: Lens Taxonomy Taxonomy (Accession Species) (Accession Species)

shortenName :: Identification Species -> Identification Species

Given a name such as Drosophila Melanogaster, returns d.melanogaster.